| | gene | name | fitness | t score | description | |
|---|
| b0685 | ybfE | +8.1 | 25.0 | orf, hypothetical protein (VIMSS) | compare |
| b3390 | aroK | +6.3 | 26.4 | shikimate kinase I (NCBI) | compare |
| b1530 | marR | +6.2 | 7.1 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b3860 | dsbA | +5.9 | 46.3 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b0464 | acrR | +5.8 | 40.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3162 | deaD | +5.6 | 22.2 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b4685 | yrbN | +5.0 | 10.2 | expressed protein (RefSeq) | compare |
| b1185 | dsbB | +4.7 | 21.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b3493 | pitA | +4.6 | 32.5 | phosphate transporter, low-affinity (NCBI) | compare |
| b2814 | metZ | +4.6 | 15.9 | tRNA-Met (NCBI) | compare |
| b4414 | tff | +4.5 | 18.7 | unknown RNA (NCBI) | compare |
| b0439 | lon | +4.2 | 22.5 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0051 | ksgA | +4.0 | 16.1 | dimethyladenosine transferase (NCBI) | compare |
| b2948 | yqgE | +3.4 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b4042 | dgkA | +3.3 | 9.5 | diacylglycerol kinase (NCBI) | compare |
| b2688 | gshA | +3.3 | 22.2 | glutamate--cysteine ligase (NCBI) | compare |
| b2684 | mprA | +3.3 | 13.3 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b3247 | cafA | +3.2 | 27.6 | bundles of cytoplasmic filaments (VIMSS) | compare |
| b2330 | yfcB | +3.2 | 7.5 | putative adenine-specific methylase (VIMSS) | compare |
| b1804 | rnd | +3.1 | 13.0 | ribonuclease D (NCBI) | compare |
| b2620 | smpB | +3.1 | 6.8 | SsrA-binding protein (NCBI) | compare |
| b2531 | iscR | +3.0 | 5.1 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4146 | yjeK | +2.9 | 12.0 | predicted lysine aminomutase (NCBI) | compare |
| b3934 | cytR | +2.9 | 25.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3398 | yrfF | +2.8 | 6.3 | predicted inner membrane protein (NCBI) | compare |
| b4005 | purD | +2.6 | 21.1 | phosphoribosylamine--glycine ligase (NCBI) | compare |
| b2312 | purF | +2.5 | 16.1 | amidophosphoribosyltransferase (NCBI) | compare |
| b3673 | emrD | +2.5 | 20.7 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b4203 | rplI | +2.5 | 15.7 | 50S ribosomal protein L9 (NCBI) | compare |
| b0564 | appY | +2.4 | 2.3 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3261 | fis | +2.3 | 6.6 | DNA-binding protein Fis (NCBI) | compare |
| b3761 | trpT | +2.3 | 7.5 | tRNA-Trp (NCBI) | compare |
| b0746 | valZ | +2.3 | 9.0 | tRNA-Val (NCBI) | compare |
| b2947 | gshB | +2.3 | 14.5 | glutathione synthetase (NCBI) | compare |
| b4375 | prfC | +2.2 | 11.6 | peptide chain release factor 3 (NCBI) | compare |
| b3781 | trxA | +2.2 | 8.2 | thioredoxin 1 (VIMSS) | compare |
| b2040 | rfbD | +2.1 | 17.5 | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | compare |
| b2557 | purL | +2.1 | 17.0 | phosphoribosylformylglycinamidine synthase (NCBI) | compare |
| b2216 | rcsD | +2.1 | 10.0 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b2618 | b2618 | +2.1 | 8.3 | orf, hypothetical protein (VIMSS) | compare |
| b1292 | sapC | +2.1 | 4.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3764 | yifE | +2.1 | 6.0 | hypothetical protein (NCBI) | compare |
| b4480 | hdfR | +2.0 | 9.2 | transcriptional regulator HdfR (NCBI) | compare |
| b2570 | rseC | +2.0 | 13.5 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b1290 | sapF | +2.0 | 4.3 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1632 | rsxE | +2.0 | 11.0 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b3190 | yrbA | +2.0 | 3.7 | orf, hypothetical protein (VIMSS) | compare |
| b2765 | ygcM | +2.0 | 7.7 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b4000 | hupA | +2.0 | 12.8 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3204 | ptsN | +1.9 | 7.9 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b3129 | sohA | +1.9 | 4.7 | predicted regulator (NCBI) | compare |
| b1630 | rsxD | +1.9 | 9.4 | electron transport complex protein RnfD (NCBI) | compare |
| b2911 | ssrS | +1.9 | 2.3 | 6S regulatory RNA (NCBI) | compare |
| b1291 | sapD | +1.9 | 3.5 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2499 | purM | +1.9 | 9.3 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b2041 | rfbB | +1.9 | 15.3 | dTDP-glucose 4,6 dehydratase, NAD(P)-binding (NCBI) | compare |
| b2218 | rcsC | +1.9 | 13.8 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b2214 | yojL | +1.8 | 12.6 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b0955 | ycbZ | +1.8 | 11.1 | predicted peptidase (NCBI) | compare |
| b1629 | rsxC | +1.8 | 12.1 | electron transport complex protein RnfC (NCBI) | compare |
| b2066 | udk | +1.8 | 9.3 | uridine/cytidine kinase (VIMSS) | compare |
| b4391 | yjjK | +1.7 | 12.6 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3785 | wzzE | +1.7 | 12.4 | putative transport protein (VIMSS) | compare |
| b4155 | yjeA | +1.7 | 2.6 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b2476 | purC | +1.7 | 5.5 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b1628 | rsxB | +1.7 | 4.5 | electron transport complex protein RnfB (NCBI) | compare |
| b0471 | ybaB | +1.7 | 7.9 | hypothetical protein (NCBI) | compare |
| b3977 | tyrU | +1.7 | 2.8 | tRNA-Tyr (NCBI) | compare |
| b3228 | sspB | +1.7 | 4.9 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b1831 | proQ | +1.6 | 6.6 | putative solute/DNA competence effector (NCBI) | compare |
| b1766 | sppA | +1.6 | 10.7 | protease IV (signal peptide peptidase) (NCBI) | conserved |
| b3871 | bipA | +1.6 | 14.0 | GTP-binding protein (NCBI) | compare |
| b3706 | trmE | +1.6 | 7.9 | tRNA modification GTPase (NCBI) | compare |
| b0523 | purE | +1.6 | 4.5 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b0449 | mdlB | +1.6 | 11.9 | fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3741 | gidA | +1.6 | 9.3 | glucose-inhibited division protein A (NCBI) | compare |
| b1109 | ndh | +1.5 | 7.7 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b1758 | b1758 | +1.5 | 2.3 | putative cytochrome oxidase (VIMSS) | compare |
| b0014 | dnaK | +1.5 | 3.3 | molecular chaperone DnaK (NCBI) | compare |
| b0145 | dksA | +1.5 | 4.1 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0122 | yacC | +1.5 | 6.3 | orf, hypothetical protein (VIMSS) | compare |
| b1048 | mdoG | +1.5 | 8.5 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b2938 | speA | +1.5 | 11.4 | arginine decarboxylase (NCBI) | compare |
| b1606 | folM | +1.4 | 9.7 | short chain dehydrogenase (NCBI) | compare |
| b2038 | rfbC | +1.4 | 8.9 | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | compare |
| b3166 | truB | +1.4 | 8.7 | tRNA pseudouridine synthase B (NCBI) | compare |
| b3636 | rpmG | +1.4 | 4.8 | 50S ribosomal protein L33 (NCBI) | compare |
| b2564 | pdxJ | +1.4 | 4.1 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b1627 | rsxA | +1.4 | 6.1 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2749 | ygbE | +1.4 | 8.9 | conserved inner membrane protein (NCBI) | compare |
| b1709 | btuD | +1.4 | 1.3 | vitamin B12-transporter ATPase (NCBI) | compare |
| b3389 | aroB | +1.4 | 5.2 | 3-dehydroquinate synthase (NCBI) | compare |
| b2796 | sdaC | +1.4 | 11.8 | predicted serine transporter (NCBI) | compare |
| b2340 | sixA | +1.4 | 6.7 | phosphohistidine phosphatase (NCBI) | compare |
| b1977 | asnT | +1.4 | 4.9 | tRNA-Asn (NCBI) | compare |
| b0448 | mdlA | +1.3 | 10.7 | fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1049 | mdoH | +1.3 | 10.1 | glucosyltransferase MdoH (NCBI) | compare |
| b0200 | gmhB | +1.3 | 2.8 | hypothetical protein (NCBI) | compare |
| b1001 | yccE | +1.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b2318 | truA | +1.3 | 4.2 | tRNA pseudouridine synthase A (NCBI) | compare |
| b2937 | speB | +1.2 | 7.9 | agmatinase (NCBI) | compare |
| b2946 | yggJ | +1.2 | 6.2 | orf, hypothetical protein (VIMSS) | compare |
| b2502 | ppx | +1.2 | 7.8 | exopolyphosphatase (NCBI) | compare |
| b0009 | mog | +1.2 | 7.3 | molybdenum cofactor biosynthesis protein (NCBI) | compare |
| b0114 | aceE | +1.2 | 1.4 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b1961 | dcm | +1.2 | 2.4 | DNA cytosine methylase (NCBI) | compare |
| b1551 | b1551 | +1.2 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b1222 | narX | +1.2 | 3.8 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b1576 | ydfD | +1.2 | 0.6 | Qin prophage; predicted protein (NCBI) | compare |
| b0357 | yaiN | +1.2 | 1.8 | putative alpha helix chain (VIMSS) | compare |
| b1499 | ydeO | +1.2 | 0.6 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b1524 | yneH | +1.2 | 1.2 | predicted glutaminase (NCBI) | compare |
| b1334 | fnr | +1.1 | 2.7 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b1691 | ydiN | +1.1 | 4.0 | predicted transporter (RefSeq) | compare |
| b4699 | fnrS | +1.1 | 1.0 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b1347 | ydaC | +1.1 | 0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b1293 | sapB | +1.1 | 1.7 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b3466 | yhhL | +1.1 | 6.1 | conserved inner membrane protein (NCBI) | compare |
| b2042 | galF | +1.1 | 6.5 | predicted subunit with GalU (NCBI) | compare |
| b0888 | trxB | +1.1 | 4.1 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b0118 | acnB | +1.1 | 1.4 | aconitate hydratase (NCBI) | compare |
| b3465 | yhhF | +1.1 | 6.4 | predicted methyltransferase (NCBI) | compare |
| b1989 | asnV | +1.1 | 3.2 | tRNA-Asn (NCBI) | compare |
| b0082 | mraW | +1.1 | 4.8 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3500 | gor | +1.1 | 2.8 | glutathione reductase (NCBI) | compare |
| b3229 | sspA | +1.1 | 3.7 | stringent starvation protein A (NCBI) | compare |
| b3290 | trkA | +1.1 | 3.3 | potassium transporter peripheral membrane component (NCBI) | compare |
| b0440 | hupB | +1.1 | 5.8 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b2319 | usg | +1.1 | 2.5 | hypothetical protein (NCBI) | compare |
| b3649 | rpoZ | +1.0 | 1.7 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b2313 | cvpA | +1.0 | 3.4 | membrane protein required for colicin V production (NCBI) | compare |
| b1363 | trkG | +1.0 | 0.6 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b0059 | hepA | +1.0 | 9.0 | ATP-dependent helicase HepA (NCBI) | compare |
| b3181 | greA | +1.0 | 4.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3258 | panF | +1.0 | 7.6 | sodium/pantothenate symporter (VIMSS) | compare |
| b1409 | ynbB | +1.0 | 0.6 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b2682 | ygaZ | +1.0 | 2.6 | predicted transporter (NCBI) | compare |
| b3778 | rep | +1.0 | 7.1 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1351 | racC | +1.0 | 0.6 | Rac prophage; predicted protein (NCBI) | compare |
| b1540 | ydfH | +1.0 | 0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3071 | yqjI | +1.0 | 3.0 | predicted transcriptional regulator (NCBI) | compare |
| b3244 | tldD | +1.0 | 7.6 | predicted peptidase (NCBI) | compare |
| b1558 | cspF | +1.0 | 1.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b1259 | yciG | +1.0 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1497 | b1497 | +0.9 | 0.6 | putative enzyme (VIMSS) | compare |
| b4235 | pmbA | +0.9 | 7.2 | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | compare |
| b4392 | slt | +0.9 | 7.8 | soluble lytic murein transglycosylase (VIMSS) | compare |
| b2114 | metG | +0.9 | 2.0 | methionyl-tRNA synthetase (NCBI) | compare |
| b2017 | yefM | +0.9 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1572 | ydfB | +0.9 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1550 | b1550 | +0.9 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0401 | brnQ | +0.9 | 6.2 | predicted branched chain amino acid transporter (LIV-II) (NCBI) | compare |
| b0851 | nfsA | +0.9 | 3.6 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b0426 | yajQ | +0.9 | 6.0 | orf, hypothetical protein (VIMSS) | compare |
| b1536 | ydeI | +0.9 | 0.6 | hypothetical protein (NCBI) | compare |
| b1690 | ydiM | +0.9 | 1.5 | predicted transporter (NCBI) | compare |
| b1167 | ymgC | +0.9 | 0.4 | hypothetical protein (NCBI) | compare |
| b1589 | ynfG | +0.9 | 1.7 | oxidoreductase, Fe-S subunit (NCBI) | compare |
| b3789 | rffH | +0.9 | 3.2 | glucose-1-phosphate thymidylyltransferase (NCBI) | compare |
| b2652 | ileY | +0.9 | 1.0 | tRNA-Ile (NCBI) | compare |
| b1332 | ynaJ | +0.9 | 0.8 | predicted inner membrane protein (NCBI) | compare |
| b2143 | cdd | +0.9 | 4.0 | cytidine deaminase (NCBI) | compare |
| b3149 | yraO | +0.9 | 5.3 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b1772 | b1772 | +0.9 | 3.2 | putative kinase (VIMSS) | compare |
| b0782 | moaB | +0.9 | 1.7 | molybdopterin biosynthesis protein B (NCBI) | compare |
| b2812 | ygdL | +0.9 | 5.4 | hypothetical protein (NCBI) | compare |
| b4494 | arpB | +0.8 | 1.4 | no description | compare |
| b0310 | ykgH | +0.8 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b0707 | ybgA | +0.8 | 2.9 | hypothetical protein (NCBI) | compare |
| b1159 | mcrA | +0.8 | 1.0 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b4594 | ymgJ | +0.8 | 2.0 | hypothetical protein (RefSeq) | compare |
| b4139 | aspA | +0.8 | 6.3 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b1545 | pinQ | +0.8 | 0.3 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b1007 | b1007 | +0.8 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3774 | ilvC | +0.8 | 6.8 | ketol-acid reductoisomerase (NCBI) | compare |
| b4381 | deoC | +0.8 | 3.5 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b1121 | ycfZ | +0.8 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b1257 | yciE | +0.8 | 0.5 | hypothetical protein (NCBI) | compare |
| b1871 | yecP | +0.8 | 3.1 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b3672 | ivbL | +0.8 | 3.1 | ilvB operon leader peptide (NCBI) | compare |
| b2707 | srlR | +0.8 | 2.7 | DNA-bindng transcriptional repressor (NCBI) | compare |
| b3009 | yghB | +0.8 | 5.7 | conserved inner membrane protein (NCBI) | compare |
| b1298 | ycjL | +0.8 | 1.6 | probable amidotransferase subunit (VIMSS) | compare |
| b1648 | b1648 | +0.8 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b0797 | rhlE | +0.8 | 4.3 | RNA helicase (NCBI) | compare |
| b0418 | pgpA | +0.8 | 4.0 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b0705 | ybfL | +0.8 | 0.7 | putative receptor protein (VIMSS) | compare |
| b0931 | pncB | +0.8 | 4.2 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b1767 | ansA | +0.8 | 1.9 | cytoplasmic asparaginase I (NCBI) | compare |
| b1505 | ydeT | +0.8 | 0.5 | hypothetical protein (RefSeq) | compare |
| b4441 | glmY | +0.8 | 1.7 | sRNA activator of glmS mRNA (RefSeq) | compare |
| b4679 | yohP | +0.7 | 1.9 | expressed protein (RefSeq) | compare |
| b0720 | gltA | +0.7 | 3.8 | citrate synthase (NCBI) | compare |
| b3248 | yhdE | +0.7 | 1.9 | Maf-like protein (NCBI) | compare |
| b3397 | nudE | +0.7 | 5.4 | ADP-ribose diphosphatase (NCBI) | compare |
| b2567 | rnc | +0.7 | 0.8 | ribonuclease III (NCBI) | compare |
| b4450 | arcZ | +0.7 | 2.4 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b4590 | ybfK | +0.7 | 0.8 | hypothetical protein (RefSeq) | compare |
| b1165 | ymgA | +0.7 | 0.6 | hypothetical protein (NCBI) | compare |
| b3546 | yhjW | +0.7 | 6.3 | orf, hypothetical protein (VIMSS) | compare |