Experiment set12IT042 for Pseudomonas putida KT2440

Compare to:

Hydroxy-L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
PP_1255 -8.6 -6.0 putative cis-4-hydroxy-D-proline oxidase conserved
PP_1257 -7.9 -5.5 putative 1-pyrroline-4-hydroxy-2-carboxylate deaminase conserved
PP_4680 -7.3 -10.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4602 -7.1 -8.5 Transcriptional regulator, AraC family conserved
PP_1258 -7.0 -6.8 4-hydroxyproline epimerase conserved
PP_0966 -7.0 -11.6 Histidinol dehydrogenase compare
PP_1259 -6.8 -10.3 Aspartate-proton symporter conserved
PP_5097 -6.8 -14.4 homoserine O-acetyltransferase compare
PP_1986 -6.7 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0967 -6.7 -12.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0417 -6.6 -21.1 Anthranilate synthase component 1 compare
PP_4678 -6.6 -15.9 Ketol-acid reductoisomerase compare
PP_4724 -6.5 -4.5 Carbamoyl-phosphate synthase small chain compare
PP_1985 -6.5 -7.8 3-isopropylmalate dehydratase large subunit compare
PP_0787 -6.5 -6.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3511 -6.4 -10.7 Branched-chain-amino-acid aminotransferase compare
PP_5015 -6.4 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0422 -6.4 -7.9 Indole-3-glycerol phosphate synthase compare
PP_0691 -6.3 -4.3 Glutamate 5-kinase compare
PP_5098 -6.3 -9.6 methionine biosynthesis protein MetW compare
PP_0290 -6.3 -6.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2001 -6.2 -11.9 O-succinylhomoserine sulfhydrylase compare
PP_4909 -6.2 -8.5 phosphoserine phosphatase compare
PP_1995 -6.2 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5185 -6.1 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2168 -6.1 -11.7 Transaldolase compare
PP_4890 -6.1 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_4679 -6.0 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1025 -6.0 -16.1 2-isopropylmalate synthase compare
PP_2371 -5.8 -9.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1079 -5.7 -7.9 Ornithine carbamoyltransferase compare
PP_1088 -5.7 -9.6 Argininosuccinate synthase compare
PP_1988 -5.7 -11.9 3-isopropylmalate dehydrogenase compare
PP_0420 -5.6 -14.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4723 -5.5 -12.3 Carbamoyl-phosphate synthase large chain compare
PP_1256 -5.5 -7.5 putative alpha-ketoglutarate semialdehyde dehydrogenase conserved
PP_0421 -5.4 -8.8 Anthranilate phosphoribosyltransferase compare
PP_0291 -5.4 -5.4 conserved protein of unknown function compare
PP_5014 -5.2 -5.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0082 -5.1 -3.5 tryptophan synthase alpha chain compare
PP_0965 -5.1 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0184 -5.0 -3.5 Argininosuccinate lyase compare
PP_3999 -5.0 -9.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0164 -4.9 -11.5 conserved protein of unknown function compare
PP_0289 -4.9 -9.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4799 -4.7 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5095 -4.7 -3.2 pyrroline-5-carboxylate reductase compare
PP_5155 -4.6 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4999 -4.6 -3.1 dihydroorotase-like protein compare
PP_5289 -4.5 -6.6 Acetylglutamate kinase compare
PP_0083 -4.5 -6.9 tryptophan synthase beta chain compare
PP_0339 -4.3 -5.1 Pyruvate dehydrogenase E1 component compare
PP_4364 -4.2 -7.1 putative Anti-sigma F factor antagonist compare
PP_2327 -4.2 -7.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0293 -4.1 -3.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -4.0 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5128 -3.8 -6.9 Dihydroxy-acid dehydratase compare
PP_2328 -3.8 -8.9 Phosphoadenosine phosphosulfate reductase compare
PP_4696 -3.8 -4.5 Nitrogen regulation protein NR(I) compare
PP_1233 -3.8 -7.5 sulfurtransferase compare
PP_1215 -3.7 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_1231 -3.4 -5.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_5303 -3.0 -6.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4782 -3.0 -8.0 Phosphomethylpyrimidine kinase compare
PP_5104 -3.0 -9.7 thiazole synthase compare
PP_5217 -2.9 -13.7 Polyphosphate kinase compare
PP_0735 -2.9 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_3484 -2.8 -8.4 Response regulator receiver protein compare
PP_0888 -2.7 -2.6 Photosynthetic apparatus regulatory protein RegA compare
PP_0393 -2.6 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1679 -2.5 -3.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1912 -2.3 -5.6 Phosphate acyltransferase compare
PP_4122 -2.3 -3.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2499 -2.2 -2.8 conserved protein of unknown function compare
PP_3507 -2.2 -12.2 Aerobic cobaltochelatase subunit CobN compare
PP_2388 -2.1 -6.0 Transporter, LysE family compare
PP_4943 -2.1 -3.1 putative Glycosyl transferase compare
PP_4826 -2.1 -6.0 Precorrin-3B C17-methyltransferase compare
PP_1654 -2.0 -4.0 cysteine synthase B compare
PP_4832 -2.0 -3.3 Precorrin-6x reductase compare
PP_4342 -2.0 -3.6 flagellar synthesis regulator, putative ATPase compare
PP_1672 -2.0 -4.9 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0833 -1.9 -1.3 queuine tRNA-ribosyltransferase compare
PP_3409 -1.9 -3.7 putative Cobalamin biosynthesis protein cobE compare
PP_1676 -1.9 -6.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2414 -1.9 -2.5 conserved exported protein of unknown function compare
PP_1681 -1.9 -9.3 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2370 -1.9 -2.1 conserved protein of unknown function compare
PP_4098 -1.9 -2.6 UvrABC system protein C compare
PP_4977 -1.8 -9.6 5,10-methylenetetrahydrofolate reductase compare
PP_3506 -1.8 -4.2 Magnesium chelatase, subunit ChII compare
PP_1348 -1.8 -6.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1675 -1.7 -9.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1673 -1.7 -6.7 cobyrinate a,c-diamide synthase compare
PP_1994 -1.7 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_4922 -1.7 -10.1 Phosphomethylpyrimidine synthase compare
PP_2375 -1.7 -11.5 cobalamin-dependent methionine synthase compare
PP_2087 -1.7 -2.9 CmpX protein compare
PP_4827 -1.7 -9.3 Precorrin-2 C(20)-methyltransferase compare
PP_1733 -1.6 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1493 -1.6 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3662 -1.6 -7.8 conserved protein of unknown function compare
PP_0435 -1.6 -11.0 Peptidase, M23/M37 family compare
PP_4480 -1.6 -7.4 arginine N-succinyltransferase, subunit alpha compare
PP_2336 -1.6 -3.3 aconitate hydratase 1 compare
PP_4830 -1.6 -5.3 precorrin-6Y C(5,15)-methyltransferase compare
PP_0356 -1.5 -5.8 malate synthase G compare
PP_1783 -1.5 -1.0 dTDP-glucose pyrophosphorylase compare
PP_1664 -1.5 -4.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1426 -1.5 -10.1 L-aspartate oxidase compare
PP_0406 -1.4 -6.5 Nucleotidyltransferase family protein compare
PP_2088 -1.4 -4.0 RNA polymerase sigma factor SigX compare
PP_1237 -1.4 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4829 -1.4 -3.5 putative precorrin-3B synthase compare
PP_4828 -1.4 -1.6 Precorrin-8X methylmutase compare
PP_2390 -1.4 -5.6 Transcriptional regulator, LysR family compare
PP_1678 -1.4 -4.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3821 -1.4 -4.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3508 -1.3 -3.3 Protein CobW compare
PP_0988 -1.3 -9.0 glycine dehydrogenase compare
PP_5393 -1.3 -1.9 putative metal-binding chaperone compare
PP_3590 -1.3 -5.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1677 -1.3 -3.9 Adenosyl-cobyric acid synthase compare
PP_4131 -1.3 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_4993 -1.3 -3.0 Glutathione synthetase compare
PP_4340 -1.3 -4.9 response regulator for chemotactic signal transduction compare
PP_4917 -1.2 -3.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4695 -1.2 -6.1 Sensory box histidine kinase compare
PP_2000 -1.2 -1.8 amidophosphoribosyl transferase compare
PP_1198 -1.2 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4392 -1.2 -6.1 chemotaxis protein methyltransferase compare
PP_4129 -1.2 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4332 -1.2 -4.6 Chemotaxis protein CheW compare
PP_1355 -1.2 -10.3 Muropeptide permease AmpG compare
PP_4699 -1.2 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2145 -1.2 -5.2 beta-N-acetylglucosaminidase compare
PP_0405 -1.2 -10.3 conserved protein of unknown function compare
PP_5007 -1.2 -2.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4120 -1.2 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_4355 -1.1 -2.4 flagellar export apparatus subunit compare
PP_t29 -1.1 -1.4 tRNA-Ala compare
PP_0986 -1.1 -4.0 aminomethyltransferase compare
PP_0997 -1.1 -5.6 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_3359 -1.1 -2.6 putative Hydroxycinnamic acid degradation regulator compare
PP_0434 -1.1 -6.8 Anhydro-N-acetylmuramic acid kinase compare
PP_5203 -1.1 -6.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_4124 -1.1 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_5216 -1.1 -2.1 exopolyphosphatase compare
PP_1629 -1.1 -3.3 Protein RecA compare
PP_1764 -1.1 -4.6 Phosphoglycolate phosphatase 2 compare
PP_5329 -1.0 -3.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4338 -1.0 -4.7 Chemotaxis histidine kinase CheA compare
PP_0001 -1.0 -1.6 probable chromosome-partitioning protein compare
PP_4891 -1.0 -3.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2429 -1.0 -2.3 putative Membrane protein compare
PP_2442 -1.0 -2.2 conserved protein of unknown function, DUF480 family compare
PP_2402 -1.0 -1.4 putative Sensor histidine kinase compare
PP_2929 -1.0 -5.1 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5422 -1.0 -3.0 hypothetical protein compare
PP_5230 -1.0 -2.0 Tyrosine recombinase XerC compare
PP_2337 -0.9 -1.9 aconitate isomerase compare
PP_4130 -0.9 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5176 -0.9 -3.4 conserved protein of unknown function compare
PP_0846 -0.9 -1.4 DnaK-like molecular chaperone specific for IscU compare
PP_0914 -0.9 -6.0 GGDEF domain protein compare
PP_0065 -0.9 -1.9 NAD-binding component of TrK potassium transporter compare
PP_0274 -0.9 -1.6 putative transcriptional regulator containing HTH domain compare
PP_3790 -0.9 -5.2 diaminopimelate epimerase compare
PP_1309 -0.9 -5.8 conserved exported protein of unknown function compare
PP_4754 -0.9 -4.3 Transcriptional regulator, TetR family compare
PP_5202 -0.9 -2.8 putative cell division protein compare
PP_5274 -0.9 -1.6 conserved protein of unknown function compare
PP_5310 -0.8 -3.1 junction-specific ATP-dependent DNA helicase compare
PP_1917 -0.8 -5.0 4-amino-4-deoxychorismate lyase compare
PP_4004 -0.8 -1.9 DNA translocase FtsK compare
PP_4734 -0.8 -4.9 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0949 -0.8 -4.2 putative ATP-binding protein UPF0042 compare
PP_1303 -0.8 -4.1 Sulfate adenylyltransferase subunit 2 compare
PP_3378 -0.8 -1.7 putative 2-ketogluconokinase compare
PP_1216 -0.8 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0117 -0.8 -3.6 Zn(2+) ABC transporter - permease subunit compare
PP_0989 -0.8 -1.3 glycine cleavage system H protein 1 compare
PP_4337 -0.8 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0218 -0.8 -5.4 Sensory box protein compare
PP_4126 -0.8 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_0612 -0.8 -4.6 FAD-dependent glycine/D-amino acid oxidase compare
PP_0547 -0.8 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0362 -0.8 -5.8 Biotin synthase compare
PP_0834 -0.8 -1.9 Sec translocation complex subunit YajC compare
PP_1734 -0.8 -1.8 Probable septum site-determining protein MinC compare
PP_2928 -0.8 -4.1 Saccharopine dehydrogenase compare
PP_0881 -0.8 -4.1 dipeptide ABC transporter - putative membrane subunit compare
PP_4482 -0.8 -1.8 Transcriptional regulator, AraC family compare
PP_1310 -0.7 -1.6 conserved hypothetical protein compare
PP_0425 -0.7 -3.0 conserved protein of unknown function compare
PP_1878 -0.7 -4.5 conserved protein of unknown function compare
PP_4804 -0.7 -2.1 RlpA-like lipoprotein compare
PP_1674 -0.7 -1.7 5,6-dimethylbenzimidazole synthase compare
PP_4793 -0.7 -1.9 conserved protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Hydroxy-L-Proline in Pseudomonas putida KT2440

For carbon source Hydroxy-L-Proline across organisms