Experiment set12IT042 for Escherichia coli BW25113

Compare to:

LB with Trimethoprim 0.00125 mM

Genes with specific phenotypes:

  gene name fitness t score description  
b3472 b3472 -4.6 -11.1 orf, hypothetical protein (VIMSS) compare
b3423 glpR -3.7 -14.8 DNA-binding transcriptional repressor (NCBI) compare
b2037 rfbX -3.4 -6.4 predicted polisoprenol-linked O-antigen transporter (NCBI) compare
b4374 yjjG -2.9 -10.6 nucleotidase (NCBI) compare
b2039 rfbA -2.6 -15.1 glucose-1-phosphate thymidylyltransferase (NCBI) compare
b2299 yfcD -2.5 -6.6 predicted NUDIX hydrolase (NCBI) compare
b1097 yceG -2.4 -7.6 predicted aminodeoxychorismate lyase (NCBI) compare
b3920 yiiQ -2.3 -7.4 hypothetical protein (NCBI) compare
b2393 nupC -2.1 -8.1 nucleoside (except guanosine) transporter (NCBI) compare
b3529 yhjK -1.9 -12.7 predicted diguanylate cyclase (RefSeq) compare
b3570 bax -1.5 -7.8 hypothetical protein (NCBI) compare
b4382 deoA -1.5 -9.1 thymidine phosphorylase (NCBI) compare
b2744 surE -1.3 -6.9 acid phosphatase (NCBI) compare
b3363 ppiA -1.2 -7.2 peptidyl-prolyl cis-trans isomerase A (rotamase A) (NCBI) compare
b2593 yfiH -1.2 -7.7 hypothetical protein (NCBI) compare
b4138 dcuA -1.0 -8.2 C4-dicarboxylate antiporter (NCBI) conserved
b2042 galF +1.0 6.8 predicted subunit with GalU (NCBI) compare
b1606 folM +1.1 7.1 short chain dehydrogenase (NCBI) compare
b1766 sppA +1.1 7.4 protease IV (signal peptide peptidase) (NCBI) conserved
b4392 slt +1.1 9.7 soluble lytic murein transglycosylase (VIMSS) compare
b0448 mdlA +1.2 9.5 fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b2796 sdaC +1.2 9.9 predicted serine transporter (NCBI) compare
b3228 sspB +1.3 5.2 ClpXP protease specificity-enhancing factor (NCBI) compare
b0449 mdlB +1.4 10.6 fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b2749 ygbE +1.4 7.9 conserved inner membrane protein (NCBI) compare
b2765 ygcM +1.4 6.6 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) compare
b1629 rsxC +1.5 8.5 electron transport complex protein RnfC (NCBI) compare
b2038 rfbC +1.5 9.3 dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) compare
b3785 wzzE +1.5 11.1 putative transport protein (VIMSS) compare
b2214 yojL +1.7 12.4 predicted thiamine biosynthesis lipoprotein (NCBI) compare
b2041 rfbB +1.7 14.3 dTDP-glucose 4,6 dehydratase, NAD(P)-binding (NCBI) compare
b2216 rcsD +1.7 9.1 phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) compare
b2066 udk +1.7 6.8 uridine/cytidine kinase (VIMSS) compare
b2570 rseC +1.7 11.0 RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) compare
b2218 rcsC +1.8 13.4 hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) compare
b1632 rsxE +2.0 11.6 NADH-ubiquinone oxidoreductase (NCBI) compare
b2040 rfbD +2.1 17.1 dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) compare
b3673 emrD +2.2 18.5 2-module integral membrane pump; multidrug resistance (VIMSS) compare
b3934 cytR +2.9 25.1 DNA-binding transcriptional dual regulator (NCBI) compare


Specific phenotypes for stress Trimethoprim across organisms