| | gene | name | fitness | t score | description | |
|---|
| b0685 | ybfE | +6.7 | 25.3 | orf, hypothetical protein (VIMSS) | compare |
| b3390 | aroK | +5.6 | 24.3 | shikimate kinase I (NCBI) | compare |
| b1530 | marR | +4.9 | 6.7 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b3860 | dsbA | +4.8 | 37.0 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b3162 | deaD | +4.8 | 22.4 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b0464 | acrR | +4.5 | 34.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4685 | yrbN | +4.3 | 11.1 | expressed protein (RefSeq) | compare |
| b2814 | metZ | +3.8 | 13.3 | tRNA-Met (NCBI) | compare |
| b3493 | pitA | +3.8 | 30.2 | phosphate transporter, low-affinity (NCBI) | compare |
| b4414 | tff | +3.7 | 13.7 | unknown RNA (NCBI) | compare |
| b0051 | ksgA | +3.6 | 15.3 | dimethyladenosine transferase (NCBI) | compare |
| b0439 | lon | +3.4 | 22.4 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b1185 | dsbB | +3.2 | 9.8 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b2620 | smpB | +3.0 | 6.6 | SsrA-binding protein (NCBI) | compare |
| b3934 | cytR | +2.9 | 25.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2531 | iscR | +2.9 | 7.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4042 | dgkA | +2.9 | 9.9 | diacylglycerol kinase (NCBI) | compare |
| b3261 | fis | +2.8 | 8.0 | DNA-binding protein Fis (NCBI) | compare |
| b2684 | mprA | +2.8 | 11.0 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1804 | rnd | +2.8 | 12.7 | ribonuclease D (NCBI) | compare |
| b4146 | yjeK | +2.7 | 10.8 | predicted lysine aminomutase (NCBI) | compare |
| b2948 | yqgE | +2.6 | 3.9 | orf, hypothetical protein (VIMSS) | compare |
| b3247 | cafA | +2.6 | 21.7 | bundles of cytoplasmic filaments (VIMSS) | compare |
| b3398 | yrfF | +2.5 | 6.6 | predicted inner membrane protein (NCBI) | compare |
| b2688 | gshA | +2.4 | 14.9 | glutamate--cysteine ligase (NCBI) | compare |
| b4203 | rplI | +2.4 | 12.4 | 50S ribosomal protein L9 (NCBI) | compare |
| b4005 | purD | +2.4 | 20.5 | phosphoribosylamine--glycine ligase (NCBI) | compare |
| b0564 | appY | +2.3 | 2.2 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b3761 | trpT | +2.3 | 7.7 | tRNA-Trp (NCBI) | compare |
| b2312 | purF | +2.2 | 15.9 | amidophosphoribosyltransferase (NCBI) | compare |
| b3673 | emrD | +2.2 | 18.5 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b2040 | rfbD | +2.1 | 17.1 | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | compare |
| b2330 | yfcB | +2.1 | 4.9 | putative adenine-specific methylase (VIMSS) | compare |
| b1630 | rsxD | +2.1 | 10.7 | electron transport complex protein RnfD (NCBI) | compare |
| b0746 | valZ | +2.0 | 8.1 | tRNA-Val (NCBI) | compare |
| b1632 | rsxE | +2.0 | 11.6 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b4375 | prfC | +2.0 | 10.0 | peptide chain release factor 3 (NCBI) | compare |
| b2557 | purL | +2.0 | 15.1 | phosphoribosylformylglycinamidine synthase (NCBI) | compare |
| b0955 | ycbZ | +1.8 | 12.1 | predicted peptidase (NCBI) | compare |
| b2218 | rcsC | +1.8 | 13.4 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b3871 | bipA | +1.8 | 14.4 | GTP-binding protein (NCBI) | compare |
| b2570 | rseC | +1.7 | 11.0 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b1628 | rsxB | +1.7 | 5.3 | electron transport complex protein RnfB (NCBI) | compare |
| b2066 | udk | +1.7 | 6.8 | uridine/cytidine kinase (VIMSS) | compare |
| b2216 | rcsD | +1.7 | 9.1 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b2041 | rfbB | +1.7 | 14.3 | dTDP-glucose 4,6 dehydratase, NAD(P)-binding (NCBI) | compare |
| b2499 | purM | +1.7 | 9.3 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b2214 | yojL | +1.7 | 12.4 | predicted thiamine biosynthesis lipoprotein (NCBI) | compare |
| b1109 | ndh | +1.7 | 9.1 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b2476 | purC | +1.6 | 4.7 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b3190 | yrbA | +1.6 | 3.5 | orf, hypothetical protein (VIMSS) | compare |
| b4000 | hupA | +1.6 | 6.4 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b3785 | wzzE | +1.5 | 11.1 | putative transport protein (VIMSS) | compare |
| b3129 | sohA | +1.5 | 4.6 | predicted regulator (NCBI) | compare |
| b4202 | rpsR | +1.5 | 3.4 | 30S ribosomal protein S18 (NCBI) | compare |
| b3181 | greA | +1.5 | 8.5 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1048 | mdoG | +1.5 | 9.1 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b3229 | sspA | +1.5 | 5.6 | stringent starvation protein A (NCBI) | compare |
| b2038 | rfbC | +1.5 | 9.3 | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | compare |
| b1629 | rsxC | +1.5 | 8.5 | electron transport complex protein RnfC (NCBI) | compare |
| b1984 | asnW | +1.4 | 3.1 | tRNA-Asn (NCBI) | compare |
| b4480 | hdfR | +1.4 | 7.0 | transcriptional regulator HdfR (NCBI) | compare |
| b1049 | mdoH | +1.4 | 11.0 | glucosyltransferase MdoH (NCBI) | compare |
| b2765 | ygcM | +1.4 | 6.6 | 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (NCBI) | compare |
| b0523 | purE | +1.4 | 3.6 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b2947 | gshB | +1.4 | 8.1 | glutathione synthetase (NCBI) | compare |
| b1627 | rsxA | +1.4 | 5.9 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b0122 | yacC | +1.4 | 7.4 | orf, hypothetical protein (VIMSS) | compare |
| b0200 | gmhB | +1.4 | 3.1 | hypothetical protein (NCBI) | compare |
| b2749 | ygbE | +1.4 | 7.9 | conserved inner membrane protein (NCBI) | compare |
| b2618 | b2618 | +1.4 | 3.8 | orf, hypothetical protein (VIMSS) | compare |
| b0449 | mdlB | +1.4 | 10.6 | fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1977 | asnT | +1.3 | 3.6 | tRNA-Asn (NCBI) | compare |
| b3781 | trxA | +1.3 | 5.6 | thioredoxin 1 (VIMSS) | compare |
| b3228 | sspB | +1.3 | 5.2 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b2938 | speA | +1.3 | 9.9 | arginine decarboxylase (NCBI) | compare |
| b4391 | yjjK | +1.3 | 8.9 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3636 | rpmG | +1.2 | 2.4 | 50S ribosomal protein L33 (NCBI) | compare |
| b2937 | speB | +1.2 | 7.9 | agmatinase (NCBI) | compare |
| b2796 | sdaC | +1.2 | 9.9 | predicted serine transporter (NCBI) | compare |
| b3500 | gor | +1.2 | 3.1 | glutathione reductase (NCBI) | compare |
| b3764 | yifE | +1.2 | 3.3 | hypothetical protein (NCBI) | compare |
| b0448 | mdlA | +1.2 | 9.5 | fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b0145 | dksA | +1.2 | 3.0 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b3204 | ptsN | +1.1 | 6.1 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b3389 | aroB | +1.1 | 4.3 | 3-dehydroquinate synthase (NCBI) | compare |
| b3166 | truB | +1.1 | 6.8 | tRNA pseudouridine synthase B (NCBI) | compare |
| b3649 | rpoZ | +1.1 | 2.1 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b3545 | proK | +1.1 | 3.4 | tRNA-Pro (NCBI) | compare |
| b1642 | slyA | +1.1 | 1.6 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1758 | b1758 | +1.1 | 1.8 | putative cytochrome oxidase (VIMSS) | compare |
| b4392 | slt | +1.1 | 9.7 | soluble lytic murein transglycosylase (VIMSS) | compare |
| b2911 | ssrS | +1.1 | 1.4 | 6S regulatory RNA (NCBI) | compare |
| b4155 | yjeA | +1.1 | 1.6 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b1766 | sppA | +1.1 | 7.4 | protease IV (signal peptide peptidase) (NCBI) | conserved |
| b1606 | folM | +1.1 | 7.1 | short chain dehydrogenase (NCBI) | compare |
| b3071 | yqjI | +1.1 | 4.1 | predicted transcriptional regulator (NCBI) | compare |
| b1831 | proQ | +1.1 | 4.0 | putative solute/DNA competence effector (NCBI) | compare |
| b1476 | fdnI | +1.1 | 1.6 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b0059 | hepA | +1.1 | 9.2 | ATP-dependent helicase HepA (NCBI) | compare |
| b2502 | ppx | +1.0 | 7.0 | exopolyphosphatase (NCBI) | compare |
| b2042 | galF | +1.0 | 6.8 | predicted subunit with GalU (NCBI) | compare |
| b2319 | usg | +1.0 | 2.6 | hypothetical protein (NCBI) | compare |
| b1573 | ydfC | +1.0 | 1.8 | Qin prophage; predicted protein (RefSeq) | compare |
| b0471 | ybaB | +1.0 | 3.7 | hypothetical protein (NCBI) | compare |
| b3466 | yhhL | +1.0 | 4.4 | conserved inner membrane protein (NCBI) | compare |
| b2812 | ygdL | +1.0 | 6.1 | hypothetical protein (NCBI) | compare |
| b4618 | tisB | +1.0 | 3.2 | lexA-regulated toxic peptide (RefSeq) | compare |
| b3465 | yhhF | +1.0 | 6.1 | predicted methyltransferase (NCBI) | compare |
| b4445 | omrB | +1.0 | 2.9 | sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq (RefSeq) | compare |
| b3706 | trmE | +1.0 | 4.8 | tRNA modification GTPase (NCBI) | compare |
| b1222 | narX | +1.0 | 2.9 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b1989 | asnV | +1.0 | 3.2 | tRNA-Asn (NCBI) | compare |
| b3741 | gidA | +1.0 | 5.1 | glucose-inhibited division protein A (NCBI) | compare |
| b0014 | dnaK | +1.0 | 2.3 | molecular chaperone DnaK (NCBI) | compare |
| b1292 | sapC | +1.0 | 2.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0851 | nfsA | +0.9 | 4.7 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b2318 | truA | +0.9 | 3.2 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1290 | sapF | +0.9 | 1.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b0889 | lrp | +0.9 | 2.2 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b2962 | yggX | +0.9 | 4.3 | hypothetical protein (NCBI) | compare |
| b2340 | sixA | +0.9 | 4.3 | phosphohistidine phosphatase (NCBI) | compare |
| b3258 | panF | +0.9 | 6.9 | sodium/pantothenate symporter (VIMSS) | compare |
| b3257 | yhdT | +0.9 | 4.7 | conserved inner membrane protein (NCBI) | compare |
| b4431 | rprA | +0.9 | 1.8 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b4592 | yccB | +0.9 | 1.4 | hypothetical protein (RefSeq) | compare |
| b1259 | yciG | +0.8 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b2682 | ygaZ | +0.8 | 2.3 | predicted transporter (NCBI) | compare |
| b1824 | yobF | +0.8 | 2.5 | hypothetical protein (NCBI) | compare |
| b1362 | rzpR | +0.8 | 1.7 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b3244 | tldD | +0.8 | 6.4 | predicted peptidase (NCBI) | compare |
| b1961 | dcm | +0.8 | 1.7 | DNA cytosine methylase (NCBI) | compare |
| b0082 | mraW | +0.8 | 2.7 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0401 | brnQ | +0.8 | 6.0 | predicted branched chain amino acid transporter (LIV-II) (NCBI) | compare |
| b0797 | rhlE | +0.8 | 4.4 | RNA helicase (NCBI) | compare |
| b1427 | rimL | +0.8 | 2.5 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b3146 | yraL | +0.8 | 4.5 | predicted methyltransferase (NCBI) | compare |
| b3164 | pnp | +0.8 | 1.8 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2567 | rnc | +0.8 | 1.0 | ribonuclease III (NCBI) | compare |
| b0114 | aceE | +0.8 | 0.9 | pyruvate dehydrogenase subunit E1 (NCBI) | compare |
| b4255 | yjgD | +0.8 | 3.7 | hypothetical protein (NCBI) | compare |
| b2313 | cvpA | +0.8 | 2.6 | membrane protein required for colicin V production (NCBI) | compare |
| b1248 | b1248 | +0.8 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b4235 | pmbA | +0.8 | 6.1 | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | compare |
| b3774 | ilvC | +0.8 | 6.2 | ketol-acid reductoisomerase (NCBI) | compare |
| b0242 | proB | +0.8 | 2.9 | gamma-glutamyl kinase (NCBI) | compare |
| b0418 | pgpA | +0.8 | 3.3 | phosphatidylglycerophosphatase A (NCBI) | compare |
| b1871 | yecP | +0.8 | 3.5 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b2285 | nuoE | +0.8 | 2.1 | NADH dehydrogenase subunit E (NCBI) | compare |
| b0435 | bolA | +0.8 | 3.7 | possible regulator of murein genes (VIMSS) | compare |
| b2113 | mrp | +0.8 | 4.6 | putative ATPase (VIMSS) | compare |
| b3778 | rep | +0.8 | 5.2 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b2587 | kgtP | +0.8 | 4.1 | alpha-ketoglutarate transporter (NCBI) | compare |
| b2946 | yggJ | +0.8 | 3.7 | orf, hypothetical protein (VIMSS) | compare |
| b3554 | yiaF | +0.7 | 5.8 | orf, hypothetical protein (VIMSS) | compare |
| b3149 | yraO | +0.7 | 4.2 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b0357 | yaiN | +0.7 | 1.1 | putative alpha helix chain (VIMSS) | compare |
| b4370 | leuQ | +0.7 | 2.3 | tRNA-Leu (NCBI) | compare |
| b0009 | mog | +0.7 | 4.4 | molybdenum cofactor biosynthesis protein (NCBI) | compare |
| b4418 | sraB | +0.7 | 1.8 | unknown RNA (NCBI) | compare |
| b2450 | yffS | +0.7 | 1.9 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4214 | cysQ | +0.7 | 5.7 | PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) | compare |
| b4077 | gltP | +0.7 | 4.9 | glutamate/aspartate:proton symporter (NCBI) | compare |
| b3672 | ivbL | +0.7 | 2.9 | ilvB operon leader peptide (NCBI) | compare |
| b1217 | chaB | +0.7 | 1.3 | cation transport regulator (NCBI) | compare |
| b1302 | puuE | +0.7 | 2.1 | GABA aminotransferase, PLP-dependent (NCBI) | compare |
| b0183 | rnhB | +0.7 | 1.8 | ribonuclease HII (NCBI) | compare |
| b0710 | ybgI | +0.7 | 3.7 | conserved metal-binding protein (NCBI) | compare |
| b3979 | thrT | +0.7 | 0.7 | tRNA-Thr (NCBI) | compare |
| b0440 | hupB | +0.7 | 3.5 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b1512 | lsrR | +0.7 | 2.7 | lsr operon transcriptional repressor (NCBI) | compare |
| b3401 | yrfI | +0.7 | 4.5 | orf, hypothetical protein (VIMSS) | compare |
| b0393 | rdgC | +0.7 | 4.9 | recombination associated protein (NCBI) | compare |
| b2210 | mqo | +0.7 | 5.2 | malate:quinone oxidoreductase (NCBI) | compare |
| b0118 | acnB | +0.7 | 0.9 | aconitate hydratase (NCBI) | compare |
| b0426 | yajQ | +0.7 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b3766 | ilvL | +0.7 | 2.2 | ilvG operon leader peptide (NCBI) | compare |
| b4139 | aspA | +0.7 | 5.3 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b2701 | mltB | +0.7 | 3.7 | membrane-bound lytic murein transglycosylase B (NCBI) | compare |
| b1334 | fnr | +0.7 | 1.8 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b4201 | priB | +0.7 | 1.2 | primosomal replication protein N (NCBI) | compare |
| b3610 | grxC | +0.7 | 4.2 | glutaredoxin 3 (NCBI) | compare |
| b2303 | folX | +0.7 | 4.4 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b1691 | ydiN | +0.7 | 2.2 | predicted transporter (RefSeq) | compare |
| b3789 | rffH | +0.6 | 2.4 | glucose-1-phosphate thymidylyltransferase (NCBI) | compare |
| b4078 | yjcO | +0.6 | 5.1 | hypothetical protein (NCBI) | compare |
| b3816 | corA | +0.6 | 4.5 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b2889 | idi | +0.6 | 3.1 | isopentenyl-diphosphate delta-isomerase (NCBI) | compare |
| b2017 | yefM | +0.6 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2580 | ung | +0.6 | 4.4 | uracil-DNA glycosylase (NCBI) | compare |
| b2810 | csdA | +0.6 | 3.7 | cysteine sulfinate desulfinase (NCBI) | compare |
| b1777 | b1777 | +0.6 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4025 | pgi | +0.6 | 4.1 | glucose-6-phosphate isomerase (NCBI) | compare |
| b2399 | yfeD | +0.6 | 2.7 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b3248 | yhdE | +0.6 | 1.7 | Maf-like protein (NCBI) | compare |
| b2564 | pdxJ | +0.6 | 1.7 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b4179 | vacB | +0.6 | 3.3 | putative enzyme (VIMSS) | compare |
| b2236 | yfaE | +0.6 | 1.6 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b3739 | atpI | +0.6 | 2.5 | membrane-bound ATP synthase, dispensable protein, affects expression of atpB (VIMSS) | compare |
| b2707 | srlR | +0.6 | 2.8 | DNA-bindng transcriptional repressor (NCBI) | compare |