Experiment set12IT040 for Pseudomonas putida KT2440

Compare to:

4-Methyl-2-oxopentanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4400 -7.8 -7.6 Bkd operon transcriptional regulator compare
PP_0422 -7.4 -7.2 Indole-3-glycerol phosphate synthase compare
PP_0966 -7.3 -10.0 Histidinol dehydrogenase compare
PP_4680 -7.2 -12.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -7.2 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0967 -6.9 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5659 -6.9 -5.5 protein of unknown function compare
PP_4678 -6.8 -16.4 Ketol-acid reductoisomerase compare
PP_5014 -6.7 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_4403 -6.6 -10.1 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_1233 -6.5 -6.4 sulfurtransferase compare
PP_4401 -6.5 -11.6 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_5098 -6.4 -9.8 methionine biosynthesis protein MetW compare
PP_3511 -6.4 -11.5 Branched-chain-amino-acid aminotransferase compare
PP_5015 -6.4 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4067 -6.4 -12.3 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_0356 -6.4 -9.8 malate synthase G compare
PP_5104 -6.2 -11.3 thiazole synthase compare
PP_5185 -6.2 -6.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0417 -6.2 -22.8 Anthranilate synthase component 1 compare
PP_0366 -6.1 -8.6 dethiobiotin synthetase compare
PP_4679 -6.1 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4782 -6.1 -5.9 Phosphomethylpyrimidine kinase compare
PP_1231 -6.0 -8.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1995 -6.0 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5097 -5.9 -16.3 homoserine O-acetyltransferase compare
PP_0293 -5.9 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -5.9 -7.0 Carbamoyl-phosphate synthase small chain compare
PP_4723 -5.7 -11.6 Carbamoyl-phosphate synthase large chain compare
PP_0965 -5.7 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4402 -5.7 -14.3 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_4116 -5.7 -15.6 isocitrate lyase compare
PP_0691 -5.7 -5.5 Glutamate 5-kinase compare
PP_4066 -5.6 -5.4 methylglutaconyl-CoA hydratase compare
PP_0083 -5.4 -3.8 tryptophan synthase beta chain compare
PP_1088 -5.4 -10.9 Argininosuccinate synthase compare
PP_4909 -5.3 -10.9 phosphoserine phosphatase compare
PP_4699 -5.3 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3999 -5.1 -8.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4064 -5.1 -15.2 isovaleryl-CoA dehydrogenase conserved
PP_0421 -5.0 -9.9 Anthranilate phosphoribosyltransferase compare
PP_5128 -5.0 -7.5 Dihydroxy-acid dehydratase compare
PP_2371 -5.0 -9.5 Sulphite reductase hemoprotein, beta subunit compare
PP_0082 -4.9 -4.7 tryptophan synthase alpha chain compare
PP_2327 -4.8 -7.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5155 -4.8 -7.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4065 -4.8 -9.9 methylcrotonyl-CoA carboxylase biotin-containing subunit beta conserved
PP_2433 -4.7 -4.8 conserved protein of unknown function compare
PP_2001 -4.7 -9.3 O-succinylhomoserine sulfhydrylase compare
PP_0184 -4.6 -5.5 Argininosuccinate lyase compare
PP_0289 -4.6 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_2168 -4.6 -13.1 Transaldolase compare
PP_0362 -4.6 -9.9 Biotin synthase compare
PP_4999 -4.6 -3.2 dihydroorotase-like protein compare
PP_0363 -4.4 -14.2 8-amino-7-oxononanoate synthase compare
PP_4696 -4.2 -2.9 Nitrogen regulation protein NR(I) compare
PP_4799 -4.2 -4.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0364 -4.1 -9.3 pimeloyl-[acp] methyl ester esterase compare
PP_0365 -4.1 -9.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0787 -4.1 -5.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0290 -4.0 -9.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5217 -4.0 -14.3 Polyphosphate kinase compare
PP_4984 -3.9 -9.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0292 -3.9 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4922 -3.8 -13.1 Phosphomethylpyrimidine synthase compare
PP_1079 -3.7 -7.2 Ornithine carbamoyltransferase compare
PP_4126 -3.5 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_4726 -3.5 -5.3 Chaperone protein DnaJ compare
PP_1348 -3.4 -5.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4364 -3.4 -6.8 putative Anti-sigma F factor antagonist compare
PP_2302 -3.4 -4.6 DNA-binding, ATP-dependent protease compare
PP_5289 -3.2 -6.5 Acetylglutamate kinase compare
PP_0291 -3.2 -3.5 conserved protein of unknown function compare
PP_4829 -3.2 -3.9 putative precorrin-3B synthase compare
PP_4058 -3.2 -12.6 1,4-alpha-glucan branching enzyme compare
PP_4700 -3.1 -2.2 pantothenate synthetase compare
PP_0368 -3.1 -10.5 putative Acyl-CoA dehydrogenase compare
PP_0735 -3.1 -3.2 molybdopterin-synthase adenylyltransferase compare
PP_4122 -3.1 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4131 -3.0 -8.3 NADH-quinone oxidoreductase subunit N compare
PP_4977 -2.9 -11.3 5,10-methylenetetrahydrofolate reductase compare
PP_1679 -2.9 -3.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2375 -2.8 -12.7 cobalamin-dependent methionine synthase compare
PP_5095 -2.8 -3.0 pyrroline-5-carboxylate reductase compare
PP_1994 -2.7 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_4695 -2.7 -9.7 Sensory box histidine kinase compare
PP_4129 -2.7 -5.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2868 -2.7 -9.5 Transcriptional regulator, Cro/CI family compare
PP_0164 -2.5 -7.1 conserved protein of unknown function compare
PP_4121 -2.4 -5.9 NADH-quinone oxidoreductase subunit C/D compare
PP_1677 -2.4 -4.7 Adenosyl-cobyric acid synthase compare
PP_3122 -2.4 -6.4 acetoacetyl CoA-transferase (subunit A) compare
PP_1676 -2.4 -7.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4120 -2.3 -4.7 NADH-quinone oxidoreductase subunit B compare
PP_4130 -2.3 -4.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0420 -2.3 -7.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4827 -2.3 -9.6 Precorrin-2 C(20)-methyltransferase compare
PP_2370 -2.3 -2.3 conserved protein of unknown function compare
PP_4124 -2.3 -4.8 NADH-quinone oxidoreductase subunit G compare
PP_0001 -2.3 -2.7 probable chromosome-partitioning protein compare
PP_4532 -2.3 -3.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2336 -2.3 -3.1 aconitate hydratase 1 compare
PP_1675 -2.3 -7.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1678 -2.2 -6.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1826 -2.2 -4.2 Hydrolase, isochorismatase family compare
PP_5085 -2.2 -7.5 malic enzyme B compare
PP_1672 -2.2 -6.5 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4826 -2.1 -7.9 Precorrin-3B C17-methyltransferase compare
PP_4404 -2.1 -7.5 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_1217 -2.1 -4.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2402 -2.1 -3.9 putative Sensor histidine kinase compare
PP_3507 -2.1 -11.1 Aerobic cobaltochelatase subunit CobN compare
PP_4830 -2.1 -6.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_1673 -2.1 -4.1 cobyrinate a,c-diamide synthase compare
PP_3123 -2.0 -6.3 acetoacetyl CoA-transferase (subunit B) compare
PP_2136 -2.0 -4.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1681 -2.0 -7.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5717 -2.0 -2.9 conserved protein of unknown function compare
PP_2337 -1.9 -2.8 aconitate isomerase compare
PP_2378 -1.9 -3.0 Fe/S biogenesis protein NfuA compare
PP_3506 -1.8 -5.7 Magnesium chelatase, subunit ChII compare
PP_1493 -1.8 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3505 -1.6 -1.8 conserved protein of unknown function compare
PP_0406 -1.5 -7.0 Nucleotidyltransferase family protein compare
PP_1664 -1.5 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4247 -1.5 -2.7 Exonuclease compare
PP_2137 -1.5 -3.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_1654 -1.5 -3.3 cysteine synthase B compare
PP_3409 -1.5 -3.0 putative Cobalamin biosynthesis protein cobE compare
PP_3484 -1.5 -3.0 Response regulator receiver protein compare
PP_4832 -1.4 -2.3 Precorrin-6x reductase compare
PP_3121 -1.4 -4.8 transcriptional regulator, LysR family compare
PP_1138 -1.3 -3.7 branched chain amino acid transporter - ATP binding subunit compare
PP_5203 -1.3 -7.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_1733 -1.3 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_3649 -1.3 -4.2 Transcriptional regulator, GntR family compare
PP_4482 -1.3 -2.2 Transcriptional regulator, AraC family compare
PP_3508 -1.3 -3.3 Protein CobW compare
PP_4098 -1.3 -1.8 UvrABC system protein C compare
PP_4179 -1.3 -7.5 Chaperone protein HtpG compare
PP_2720 -1.3 -1.7 conserved protein of unknown function compare
PP_5350 -1.3 -2.4 Transcriptional regulator, RpiR family compare
PP_1428 -1.2 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_2000 -1.2 -1.6 amidophosphoribosyl transferase compare
PP_5216 -1.2 -2.3 exopolyphosphatase compare
PP_4641 -1.2 -8.2 putative transporter compare
PP_1137 -1.2 -6.3 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_4342 -1.2 -2.5 flagellar synthesis regulator, putative ATPase compare
PP_4722 -1.2 -3.8 Transcription elongation factor GreA compare
PP_0063 -1.2 -2.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4515 -1.2 -6.6 Transcriptional regulator, MarR family compare
PP_4828 -1.1 -1.3 Precorrin-8X methylmutase compare
PP_4640 -1.1 -6.6 conserved protein of unknown function compare
PP_1387 -1.1 -5.0 Probable HTH-type transcriptional regulator TtgR compare
PP_1141 -1.1 -6.7 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1215 -1.1 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_3662 -1.1 -5.5 conserved protein of unknown function compare
PP_1783 -1.1 -1.0 dTDP-glucose pyrophosphorylase compare
PP_1139 -1.1 -7.5 branched chain amino acid transporter - permease subunit compare
PP_0855 -1.0 -1.6 conserved protein of unknown function compare
PP_0653 -1.0 -1.5 conserved protein of unknown function compare
PP_2217 -1.0 -3.0 enoyl-CoA hydratase compare
PP_2145 -1.0 -5.1 beta-N-acetylglucosaminidase compare
PP_5311 -1.0 -6.1 putative signal transduction protein compare
PP_1140 -1.0 -5.9 branched chain amino acid transporter - permease subunit compare
PP_4008 -1.0 -5.2 ATP-dependent serine protease compare
PP_5045 -1.0 -2.6 tRNA sulfurtransferase compare
PP_0997 -1.0 -5.4 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_5227 -1.0 -3.9 diaminopimelate decarboxylase compare
PP_2028 -1.0 -2.6 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2328 -1.0 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_1294 -0.9 -3.3 molybdopterin synthase large subunit compare
PP_4994 -0.9 -3.5 conserved protein of unknown function compare
PP_5644 -0.9 -2.5 conserved membrane protein of unknown function compare
PP_0435 -0.9 -6.6 Peptidase, M23/M37 family compare
PP_2414 -0.9 -2.2 conserved exported protein of unknown function compare
PP_3790 -0.9 -6.2 diaminopimelate epimerase compare
PP_2499 -0.9 -1.8 conserved protein of unknown function compare
PP_0988 -0.9 -6.4 glycine dehydrogenase compare
PP_3365 -0.9 -1.5 Acetolactate synthase compare
PP_0880 -0.9 -3.2 dipeptide ABC transporter - putative membrane subunit compare
PP_5202 -0.9 -2.9 putative cell division protein compare
PP_1655 -0.9 -4.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2087 -0.9 -2.1 CmpX protein compare
PP_0874 -0.9 -2.6 conserved protein of unknown function compare
PP_1824 -0.9 -1.2 Smr domain protein compare
PP_3102 -0.9 -2.8 conserved protein of unknown function compare
PP_0986 -0.9 -3.1 aminomethyltransferase compare
PP_0513 -0.9 -2.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3248 -0.9 -1.6 Dyp-type peroxidase family protein compare
PP_0248 -0.9 -5.9 Probable alpha-L-glutamate ligase compare
PP_2388 -0.9 -2.5 Transporter, LysE family compare
PP_1605 -0.8 -3.4 Ribonuclease HII compare
PP_4340 -0.8 -3.6 response regulator for chemotactic signal transduction compare
PP_1898 -0.8 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0340 -0.8 -5.5 Glutamate-ammonia-ligase adenylyltransferase compare
PP_5654 -0.8 -1.4 putative phosphotriesterase compare
PP_4471 -0.8 -3.2 Magnesium transporter compare
PP_4338 -0.8 -4.1 Chemotaxis histidine kinase CheA compare
PP_1353 -0.8 -0.7 conserved membrane protein of unknown function compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source 4-Methyl-2-oxovaleric acid in Pseudomonas putida KT2440

For carbon source 4-Methyl-2-oxovaleric acid across organisms