Experiment set12IT039 for Pseudomonas putida KT2440

Compare to:

1,4-Butanediol carbon source

200 most important genes:

  gene name fitness t score description  
PP_4364 -8.0 -5.6 putative Anti-sigma F factor antagonist compare
PP_0787 -7.5 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2433 -7.3 -5.1 conserved protein of unknown function compare
PP_5097 -7.2 -8.6 homoserine O-acetyltransferase compare
PP_3511 -7.1 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_0422 -7.1 -6.9 Indole-3-glycerol phosphate synthase compare
PP_1231 -6.9 -4.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1985 -6.7 -8.0 3-isopropylmalate dehydratase large subunit compare
PP_4679 -6.6 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_4890 -6.4 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_4724 -6.3 -4.4 Carbamoyl-phosphate synthase small chain compare
PP_4680 -6.3 -14.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -6.2 -12.6 O-succinylhomoserine sulfhydrylase compare
PP_0967 -6.1 -12.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0691 -6.0 -4.2 Glutamate 5-kinase compare
PP_4678 -6.0 -17.7 Ketol-acid reductoisomerase compare
PP_2168 -5.7 -11.6 Transaldolase compare
PP_1079 -5.7 -6.8 Ornithine carbamoyltransferase compare
PP_0966 -5.6 -13.8 Histidinol dehydrogenase compare
PP_1988 -5.6 -11.0 3-isopropylmalate dehydrogenase compare
PP_2371 -5.5 -9.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -5.4 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0420 -5.4 -14.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4723 -5.4 -11.4 Carbamoyl-phosphate synthase large chain compare
PP_1088 -5.3 -10.3 Argininosuccinate synthase compare
PP_1025 -5.3 -14.4 2-isopropylmalate synthase compare
PP_0290 -5.3 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0417 -5.3 -19.4 Anthranilate synthase component 1 compare
PP_0164 -5.2 -10.0 conserved protein of unknown function compare
PP_3999 -5.2 -7.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0289 -5.2 -9.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -5.1 -10.2 methionine biosynthesis protein MetW compare
PP_2327 -5.1 -7.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5014 -5.1 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5155 -4.9 -7.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0965 -4.9 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2328 -4.8 -9.6 Phosphoadenosine phosphosulfate reductase compare
PP_0421 -4.7 -8.5 Anthranilate phosphoribosyltransferase compare
PP_5015 -4.7 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3484 -4.7 -8.1 Response regulator receiver protein compare
PP_5289 -4.5 -6.1 Acetylglutamate kinase compare
PP_5128 -4.4 -7.2 Dihydroxy-acid dehydratase compare
PP_0184 -4.4 -5.2 Argininosuccinate lyase compare
PP_5095 -4.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_3662 -4.4 -11.4 conserved protein of unknown function compare
PP_0082 -4.3 -5.1 tryptophan synthase alpha chain compare
PP_0083 -4.3 -6.5 tryptophan synthase beta chain compare
PP_5185 -4.3 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4999 -4.3 -2.9 dihydroorotase-like protein compare
PP_2049 -4.2 -9.5 Alcohol dehydrogenase, iron-containing conserved
PP_4058 -4.2 -14.8 1,4-alpha-glucan branching enzyme compare
PP_0293 -3.8 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4909 -3.8 -8.2 phosphoserine phosphatase compare
PP_0339 -3.7 -5.6 Pyruvate dehydrogenase E1 component compare
PP_4120 -3.6 -4.3 NADH-quinone oxidoreductase subunit B compare
PP_1215 -3.5 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4799 -3.5 -4.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4977 -3.4 -13.7 5,10-methylenetetrahydrofolate reductase compare
PP_0292 -3.4 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1426 -3.4 -13.2 L-aspartate oxidase compare
PP_4696 -3.2 -4.9 Nitrogen regulation protein NR(I) compare
PP_4004 -3.1 -4.2 DNA translocase FtsK compare
PP_1654 -3.0 -3.6 cysteine synthase B compare
PP_4993 -2.9 -2.9 Glutathione synthetase compare
PP_4480 -2.9 -11.1 arginine N-succinyltransferase, subunit alpha compare
PP_4129 -2.9 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4700 -2.8 -1.9 pantothenate synthetase compare
PP_2370 -2.8 -3.2 conserved protein of unknown function compare
PP_2375 -2.7 -15.1 cobalamin-dependent methionine synthase compare
PP_2047 -2.7 -9.3 3-hydroxyacyl-CoA dehydrogenase family protein compare
PP_4131 -2.7 -7.5 NADH-quinone oxidoreductase subunit N compare
PP_1589 -2.6 -8.3 uridylyltransferase compare
PP_2326 -2.6 -9.1 Universal stress protein compare
PP_0381 -2.6 -7.7 Coenzyme PQQ synthesis protein F compare
PP_4126 -2.6 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_1216 -2.4 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0291 -2.4 -2.4 conserved protein of unknown function compare
PP_4342 -2.4 -4.0 flagellar synthesis regulator, putative ATPase compare
PP_4124 -2.4 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_1304 -2.4 -10.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3505 -2.4 -3.0 conserved protein of unknown function compare
PP_4122 -2.3 -3.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0376 -2.3 -11.4 Coenzyme PQQ synthesis protein E compare
PP_4121 -2.2 -5.0 NADH-quinone oxidoreductase subunit C/D compare
PP_0379 -2.2 -5.4 Coenzyme PQQ synthesis protein B compare
PP_0378 -2.1 -7.2 Pyrroloquinoline-quinone synthase compare
PP_3075 -2.1 -5.8 putative transcriptional regulator compare
PP_4699 -2.0 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4827 -2.0 -8.3 Precorrin-2 C(20)-methyltransferase compare
PP_1678 -2.0 -3.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1826 -2.0 -2.6 Hydrolase, isochorismatase family compare
PP_1303 -2.0 -8.0 Sulfate adenylyltransferase subunit 2 compare
PP_3649 -2.0 -4.6 Transcriptional regulator, GntR family compare
PP_1428 -2.0 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_5075 -2.0 -10.4 glutamate synthase (NADPH) beta subunit compare
PP_2402 -1.9 -3.8 putative Sensor histidine kinase compare
PP_1328 -1.9 -4.0 Protein MraZ compare
PP_1198 -1.9 -3.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2132 -1.9 -4.0 Universal stress protein compare
PP_4779 -1.9 -13.2 AMP nucleosidase compare
PP_5748 -1.8 -3.7 cytochrome c heme lyase subunit compare
PP_0735 -1.8 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4826 -1.8 -5.4 Precorrin-3B C17-methyltransferase compare
PP_4880 -1.8 -8.0 exoribonuclease R compare
PP_4793 -1.8 -3.9 conserved protein of unknown function compare
PP_3603 -1.7 -6.1 Transcriptional regulator, GntR family compare
PP_1677 -1.7 -5.3 Adenosyl-cobyric acid synthase compare
PP_4130 -1.7 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2414 -1.7 -1.8 conserved exported protein of unknown function compare
PP_0914 -1.7 -8.8 GGDEF domain protein compare
PP_4832 -1.6 -3.5 Precorrin-6x reductase compare
PP_1233 -1.6 -5.2 sulfurtransferase compare
PP_1217 -1.6 -3.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3507 -1.6 -9.5 Aerobic cobaltochelatase subunit CobN compare
PP_1675 -1.6 -6.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0406 -1.6 -6.0 Nucleotidyltransferase family protein compare
PP_1779 -1.6 -6.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5035 -1.5 -4.4 Histidine utilization repressor compare
PP_1672 -1.5 -5.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2336 -1.5 -2.9 aconitate hydratase 1 compare
PP_5217 -1.5 -10.0 Polyphosphate kinase compare
PP_1994 -1.4 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1673 -1.4 -6.1 cobyrinate a,c-diamide synthase compare
PP_4829 -1.4 -4.1 putative precorrin-3B synthase compare
PP_2145 -1.4 -5.0 beta-N-acetylglucosaminidase compare
PP_1681 -1.4 -7.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1679 -1.4 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4098 -1.4 -3.0 UvrABC system protein C compare
PP_3506 -1.4 -2.9 Magnesium chelatase, subunit ChII compare
PP_2378 -1.4 -2.4 Fe/S biogenesis protein NfuA compare
PP_4830 -1.4 -4.3 precorrin-6Y C(5,15)-methyltransferase compare
PP_0405 -1.4 -11.0 conserved protein of unknown function compare
PP_1734 -1.4 -2.2 Probable septum site-determining protein MinC compare
PP_0117 -1.4 -6.7 Zn(2+) ABC transporter - permease subunit compare
PP_3102 -1.4 -4.5 conserved protein of unknown function compare
PP_4009 -1.3 -5.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_2682 -1.3 -5.5 Fe-containing alcohol dehydrogenase compare
PP_1355 -1.3 -11.1 Muropeptide permease AmpG compare
PP_0185 -1.3 -5.5 Positive alginate biosynthesis regulatory protein compare
PP_0434 -1.3 -7.8 Anhydro-N-acetylmuramic acid kinase compare
PP_0959 -1.2 -1.7 phospholipid ABC transporter compare
PP_1778 -1.2 -3.7 Lipopolysaccharide ABC export system, permease protein compare
PP_0989 -1.2 -3.3 glycine cleavage system H protein 1 compare
PP_1493 -1.2 -1.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3074 -1.2 -5.2 D-beta-hydroxybutyrate permease compare
PP_5328 -1.2 -4.0 putative phosphate transport system permease protein compare
PP_0995 -1.2 -4.7 conserved membrane protein of unknown function compare
PP_4010 -1.2 -3.2 DNA replication inhibitor compare
PP_3508 -1.2 -3.3 Protein CobW compare
PP_1676 -1.2 -4.8 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2203 -1.2 -0.8 conserved protein of unknown function compare
PP_3731 -1.2 -7.0 Transcriptional regulator, TetR family compare
PP_5104 -1.2 -4.4 thiazole synthase compare
PP_2335 -1.1 -6.0 methylcitrate synthase compare
PP_2675 -1.1 -3.1 Cytochrome c-type protein compare
PP_0789 -1.1 -4.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_5313 -1.1 -2.0 DNA-binding protein HU-alpha compare
PP_2046 -1.1 -1.7 Transcriptional regulator, LysR family compare
PP_1387 -1.1 -4.1 Probable HTH-type transcriptional regulator TtgR compare
PP_1628 -1.1 -4.7 NMN amidohydrolase compare
PP_2665 -1.1 -5.1 Glycerol metabolism activator compare
PP_4895 -1.1 -1.3 tRNA dimethylallyltransferase compare
PP_2672 -1.1 -4.6 Transcriptional activator protein ExaE compare
PP_0377 -1.1 -1.0 coenzyme PQQ synthesis protein D compare
PP_0086 -1.0 -3.1 conserved protein of unknown function compare
PP_0951 -1.0 -5.4 Ribosome hibernation promoting factor compare
PP_4828 -1.0 -1.2 Precorrin-8X methylmutase compare
PP_2806 -1.0 -4.8 Transcriptional regulator, TetR family compare
PP_0120 -1.0 -5.6 putative zinc ABC transporter compare
PP_3880 -1.0 -1.6 conserved exported protein of unknown function compare
PP_5327 -1.0 -4.0 putative phosphate ABC transporter, permease subunit compare
PP_2061 -1.0 -3.4 conserved protein of unknown function compare
PP_5146 -1.0 -5.0 RNA pyrophosphohydrolase compare
PP_4247 -1.0 -1.5 Exonuclease compare
PP_5329 -1.0 -2.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2429 -1.0 -1.9 putative Membrane protein compare
PP_4902 -1.0 -1.8 Oligoribonuclease compare
PP_1733 -1.0 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_0435 -0.9 -6.0 Peptidase, M23/M37 family compare
PP_3647 -0.9 -2.8 putative Oxidoreductase compare
PP_1568 -0.9 -1.3 conserved protein of unknown function compare
PP_4363 -0.9 -5.6 Sensor histidine kinase/response regulator compare
PP_4479 -0.9 -3.1 arginine N-succinyltransferase, subunit beta compare
PP_1294 -0.9 -3.3 molybdopterin synthase large subunit compare
PP_3866 -0.9 -2.4 conserved protein of unknown function compare
PP_4505 -0.9 -4.5 Sensor histidine kinase compare
PP_1353 -0.9 -0.6 conserved membrane protein of unknown function compare
PP_2671 -0.9 -4.8 Sensor histidine kinase compare
PP_4008 -0.9 -4.0 ATP-dependent serine protease compare
PP_4701 -0.9 -1.1 glucose-6-phosphate isomerase compare
PP_4726 -0.9 -1.9 Chaperone protein DnaJ compare
PP_0356 -0.9 -4.5 malate synthase G compare
PP_4959 -0.9 -6.0 diguanylate cyclase compare
PP_5058 -0.9 -2.6 Carboxy-terminal-processing protease compare
PP_4695 -0.9 -4.5 Sensory box histidine kinase compare
PP_2123 -0.9 -4.4 molybdenum::molybdopterin ligase compare
PP_5717 -0.9 -1.6 conserved protein of unknown function compare
PP_2000 -0.9 -1.3 amidophosphoribosyl transferase compare
PP_2680 -0.9 -3.0 aldehyde dehydrogenase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source 1,4-Butanediol in Pseudomonas putida KT2440

For carbon source 1,4-Butanediol across organisms