Experiment set12IT039 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu4217 -4.4 -2.8 TetR family transcriptional regulator compare
Atu2036 -4.0 -14.1 acetolactate synthase III, large subunit compare
Atu2125 -3.7 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0769 -3.5 -2.8 protoheme IX farnesyltransferase compare
Atu1588 -3.4 -9.3 homoserine dehydrogenase compare
Atu0040 -3.4 -1.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3763 -3.4 -2.3 hypothetical protein compare
Atu0400 -3.3 -5.0 orotate phosphoribosyltransferase compare
Atu0039 -3.2 -2.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu1810 -3.0 -1.5 hypothetical protein compare
Atu0298 -3.0 -6.3 orotidine 5 compare
Atu1307 -3.0 -7.7 dihydroorotase compare
Atu0399 -2.9 -8.6 dihydroorotase compare
Atu0043 -2.9 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu3755 -2.9 -6.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3707 -2.8 -4.2 phosphoserine aminotransferase compare
Atu0537 -2.7 -8.0 histidinol dehydrogenase compare
Atu2728 -2.7 -4.8 beta (1-->2) glucan export ATP-binding protein compare
Atu0354 -2.5 -3.0 ferric uptake regulator compare
Atu0678 -2.5 -7.0 histidyl-tRNA synthetase compare
Atu2040 -2.5 -7.5 phosphoserine phosphatase compare
Atu1750 -2.5 -7.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu0679 -2.4 -7.1 ATP phosphoribosyltransferase compare
Atu1030 -2.3 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0486 -2.3 -5.4 dihydroorotate dehydrogenase compare
Atu0647 -2.3 -8.0 phosphoribosylamine--glycine ligase compare
Atu1845 -2.2 -5.4 phosphoribosylformylglycinamidine synthase I compare
Atu2439 -2.1 -1.9 hypothetical protein compare
Atu2684 -2.0 -1.7 hypothetical protein compare
Atu0331 -2.0 -3.1 sigma-54 modulation protein compare
Atu3885 -1.9 -8.1 inositol monophosphatase compare
Atu2718 -1.9 -7.1 homoserine O-succinyltransferase compare
Atu1308 -1.9 -6.6 aspartate carbamoyl transferase catalytic subunit compare
Atu1844 -1.8 -3.4 Phosphoribosylformylglycinamidine synthetase compare
Atu1417 -1.8 -7.7 enoyl-CoA hydratase compare
Atu1205 -1.8 -9.9 threonine dehydratase compare
Atu0038 -1.8 -5.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1850 -1.8 -3.7 phosphoribosylformylglycinamidine synthetase II compare
Atu3754 -1.8 -2.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4317 -1.7 -3.5 TetR family transcriptional regulator compare
Atu1688 -1.7 -4.8 indole-3-glycerol-phosphate synthase compare
Atu1141 -1.7 -5.4 Phosphoribosylglycinamide synthetase compare
Atu0031 -1.7 -1.7 PTS system, IIA component compare
Atu0784 -1.7 -4.1 hypothetical protein compare
Atu1644 -1.7 -4.6 hypothetical protein compare
Atu3706 -1.7 -5.7 D-3-phosphoglycerate dehydrogenase compare
Atu0894 -1.7 -2.7 ABC transporter, membrane spanning protein compare
Atu5540 -1.7 -1.6 hypothetical protein compare
Atu1904 -1.6 -2.5 transcriptional regulator compare
Atu0041 -1.6 -2.0 glutamine amidotransferase compare
Atu0912 -1.5 -1.5 Na+/H+ antiporter compare
Atu3712 -1.5 -2.0 hypothetical protein compare
Atu1364 -1.5 -6.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1902 -1.5 -4.4 transketolase compare
Atu0142 -1.5 -2.7 cytochrome o ubiquinol oxidase subunit II compare
Atu0432 -1.5 -6.4 O-succinylhomoserine sulfhydrylase compare
Atu2289 -1.5 -9.7 anthranilate synthase component I and II compare
Atu1447 -1.4 -2.6 two component sensor kinase compare
Atu3908 -1.4 -6.5 GntR family transcriptional regulator compare
Atu2237 -1.4 -4.4 cytochrome c1 compare
Atu3469 -1.4 -2.4 phosphoglyceromutase compare
Atu1687 -1.4 -7.7 anthranilate phosphoribosyltransferase compare
Atu1513 -1.4 -4.5 ABC excinuclease subunit A compare
Atu2207 -1.4 -3.4 two component sensor kinase compare
Atu0017 -1.4 -3.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2791 -1.3 -6.1 3-isopropylmalate dehydrogenase compare
Atu0703 -1.3 -2.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0029 -1.3 -5.9 S-adenosylhomocysteine hydrolase compare
Atu0346 -1.3 -2.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2238 -1.3 -7.3 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu8054 -1.3 -1.1 hypothetical protein compare
Atu3727 -1.3 -4.2 hypothetical protein compare
Atu1705 -1.3 -4.5 SEC-independent protein translocase protein compare
Atu1075 -1.3 -5.9 amidophosphoribosyltransferase compare
Atu1140 -1.3 -5.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3353 -1.2 -7.2 mannose-1-phosphate guanylyltransferase compare
Atu0269 -1.2 -3.5 exodeoxyribonuclease VII large subunit compare
Atu2264 -1.2 -6.5 2-isopropylmalate synthase compare
Atu1470 -1.2 -1.4 Camphor resistance protein compare
Atu2239 -1.2 -3.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2709 -1.2 -8.0 3-isopropylmalate dehydratase, large subunit compare
Atu2554 -1.2 -1.2 lysyl-tRNA synthetase compare
Atu8138 -1.2 -1.6 hypothetical protein compare
Atu1645 -1.1 -4.5 ABC transporter, substrate binding protein compare
Atu4616 -1.1 -1.8 dTDP-4-dehydrorhamnose reductase compare
Atu0099 -1.1 -6.0 prephenate dehydratase compare
Atu1129 -1.1 -4.9 excinuclease ABC chain C compare
Atu3311 -1.1 -7.1 phosphomannose isomerase compare
Atu0086 -1.1 -0.8 ribosome-binding factor A compare
Atu0977 -1.1 -3.1 serine protease DO-like protease compare
Atu4346 -1.1 -3.9 hypothetical protein compare
Atu0723 -1.1 -1.6 FAD dependent oxidoreductase compare
Atu2790 -1.1 -1.4 3-isopropylmalate dehydratase, small subunit compare
Atu1647 -1.1 -5.8 ABC transporter, membrane spanning protein compare
Atu0413 -1.1 -2.2 stress induced protein compare
Atu2052 -1.1 -4.4 hypothetical protein compare
Atu1163 -1.1 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0205 -1.0 -5.7 methylmalonate-semialdehyde dehydrogenase compare
Atu1646 -1.0 -4.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0051 -1.0 -3.1 two component sensor kinase compare
Atu2640 -1.0 -4.1 hypothetical protein compare
Atu5125 -1.0 -3.6 GntR family transcriptional regulator compare
Atu0660 -1.0 -4.7 hydrolase compare
Atu1528 -1.0 -6.9 nitrogen fixation protein FixI compare
Atu0050 -1.0 -3.1 two component response regulator compare
Atu0893 -1.0 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu0184 -1.0 -2.6 glucokinase compare
Atu4166 -1.0 -1.7 UDP-glucose 4-epimerase compare
Atu2832 -1.0 -3.1 tRNA modification GTPase compare
Atu2083 -1.0 -3.1 DNA repair protein RecN compare
Atu1468 -1.0 -5.3 hypothetical protein compare
Atu0141 -0.9 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu6098 -0.9 -0.9 transcriptional regulator, HTH family compare
Atu1537 -0.9 -5.4 cytochrome-c oxidase, FixN chain compare
Atu4618 -0.9 -5.8 dTDP-rhamnose-3,5-epimerase compare
Atu2184 -0.9 -4.2 transcriptional regulator, AsnC family compare
Atu1527 -0.9 -4.1 nitrogen fixation protein FixS compare
Atu3730 -0.9 -1.3 hypothetical protein compare
Atu0971 -0.9 -2.3 two component sensor kinase compare
Atu2548 -0.9 -7.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4614 -0.9 -4.4 glycosyltransferase compare
Atu0153 -0.9 -2.3 transcriptional regulator, Fur family compare
Atu1445 -0.9 -2.7 two component sensor kinase compare
Atu3739 -0.9 -1.9 phosphoglycerate kinase compare
Atu8167 -0.9 -6.2 putative transmembrane protein compare
Atu0976 -0.9 -2.4 cycL protein compare
Atu1535 -0.9 -2.8 cytochrome c oxidase, FixQ chain compare
Atu2578 -0.9 -3.5 cAMP-dependent protein kinase regulatory subunit compare
Atu5124 -0.8 -6.7 glutamate-1-semialdehyde aminotransferase compare
Atu2274 -0.8 -3.6 cation efflux system protein compare
Atu0101 -0.8 -3.0 cytochrome c compare
Atu3496 -0.8 -2.9 hypothetical protein compare
Atu4615 -0.8 -5.8 glucose-1-phosphate thymidylyltransferase compare
Atu4617 -0.8 -5.2 dTDP-D-glucose-4,6-dehydratase compare
Atu1009 -0.8 -1.4 hypothetical protein compare
Atu1602 -0.8 -3.2 transcriptional activator, Crp family compare
Atu0690 -0.8 -1.7 hypothetical protein compare
Atu2367 -0.8 -1.4 hypothetical protein compare
Atu1774 -0.8 -4.2 ABC transporter, substrate binding protein (peptide) compare
Atu0973 -0.8 -4.4 cycH protein compare
Atu3008 -0.8 -0.7 hypothetical protein compare
Atu2831 -0.8 -3.1 glucose inhibited division protein A compare
Atu1333 -0.8 -2.0 outer membrane protein compare
Atu1173 -0.7 -4.3 MFS permease compare
Atu0544 -0.7 -1.4 hypothetical protein compare
Atu2001 -0.7 -4.0 excinuclease ABC subunit B compare
Atu0361 -0.7 -1.4 transcriptional regulator compare
Atu3517 -0.7 -3.3 acetyltransferase compare
Atu2616 -0.7 -3.9 hypothetical protein compare
Atu1359 -0.7 -0.8 dnaK deletion suppressor protein compare
Atu8191 -0.7 -1.0 hypothetical protein compare
Atu3485 -0.7 -5.3 short chain dehydrogenase compare
Atu1677 -0.7 -2.7 queuine tRNA-ribosyltransferase compare
Atu2379 -0.7 -4.2 phosphomannomutase compare
Atu0923 -0.7 -2.1 hypothetical protein compare
Atu1589 -0.7 -2.3 aminotransferase, class I compare
Atu2073 -0.7 -2.6 membrane protein compare
Atu1686 -0.7 -5.2 peptidyl-prolyl cis-trans isomerse D compare
Atu6114 -0.7 -1.0 hypothetical protein compare
Atu8087 -0.7 -0.9 putative peptidoglycan binding protein compare
Atu0401 -0.7 -3.1 fructokinase compare
Atu1529 -0.7 -2.5 nitrogen fixation protein FixH compare
Atu1467 -0.7 -1.7 hypothetical protein compare
Atu2026 -0.7 -3.7 exodeoxyribonuclease V compare
Atu6131 -0.7 -2.6 TraR Antiactivator compare
Atu0999 -0.7 -3.1 magnesium transport protein compare
Atu1077 -0.7 -1.6 DNA repair protein compare
Atu4613 -0.7 -4.6 glycosyltransferase compare
Atu1007 -0.7 -1.4 hypothetical protein compare
Atu3486 -0.7 -2.2 DeoR family transcriptional regulator compare
Atu0190 -0.6 -2.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3429 -0.6 -0.9 hypothetical protein compare
Atu1530 -0.6 -4.3 nitrogen fixation protein FixG compare
Atu1074 -0.6 -4.0 NAD/NADP dependent oxidoreductase compare
Atu1714 -0.6 -1.0 exonuclease III compare
Atu4773 -0.6 -0.9 two component response regulator compare
Atu0499 -0.6 -3.3 hypothetical protein compare
Atu0201 -0.6 -1.2 hypothetical protein compare
Atu0340 -0.6 -1.2 SAM dependent methyltransferase compare
Atu2648 -0.6 -1.9 hypothetical protein compare
Atu8145 -0.6 -2.8 hypothetical protein compare
Atu2803 -0.6 -1.6 Cobalamin biosynthesis associated protein compare
Atu3798 -0.6 -3.0 TetR family transcriptional regulator compare
Atu3598 -0.6 -1.3 thiol:disulfide interchange protein compare
Atu4099 -0.6 -3.5 hypothetical protein compare
Atu8115 -0.6 -3.6 Hypothetical Protein compare
Atu0030 -0.6 -1.0 phosphocarrier protein HPr compare
Atu1327 -0.6 -1.7 NADH-ubiquinone oxidoreductase compare
Atu0434 -0.6 -0.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2352 -0.6 -1.2 hypothetical protein compare
Atu2588 -0.6 -3.5 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu0344 -0.6 -2.0 hypothetical protein compare
Atu4711 -0.6 -2.4 two component sensor kinase compare
Atu5115 -0.6 -0.9 hypothetical protein compare
Atu4072 -0.6 -1.0 nodulation protein N compare
Atu3121 -0.6 -0.8 cold shock protein compare
Atu3911 -0.6 -2.0 hypothetical protein compare
Atu1204 -0.6 -2.4 potassium uptake protein compare
Atu2455 -0.6 -2.8 uracil-DNA glycosylase compare
Atu3481 -0.6 -2.6 enoyl-CoA hydratase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms