Experiment set12IT038 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu0769 -4.2 -2.9 protoheme IX farnesyltransferase compare
Atu1030 -3.5 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3707 -3.2 -3.1 phosphoserine aminotransferase compare
Atu3730 -3.0 -2.5 hypothetical protein compare
Atu0041 -3.0 -3.3 glutamine amidotransferase compare
Atu2554 -2.9 -2.5 lysyl-tRNA synthetase compare
Atu0399 -2.8 -6.0 dihydroorotase compare
Atu1588 -2.8 -7.8 homoserine dehydrogenase compare
Atu2036 -2.7 -15.0 acetolactate synthase III, large subunit compare
Atu0400 -2.6 -5.5 orotate phosphoribosyltransferase compare
Atu1845 -2.4 -4.6 phosphoribosylformylglycinamidine synthase I compare
Atu2684 -2.4 -2.1 hypothetical protein compare
Atu1307 -2.4 -4.1 dihydroorotase compare
Atu3469 -2.3 -3.9 phosphoglyceromutase compare
Atu0434 -2.3 -3.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0678 -2.2 -5.8 histidyl-tRNA synthetase compare
Atu0537 -2.2 -7.5 histidinol dehydrogenase compare
Atu4317 -2.2 -3.8 TetR family transcriptional regulator compare
Atu0038 -2.1 -5.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0298 -2.1 -6.9 orotidine 5 compare
Atu1417 -2.1 -6.9 enoyl-CoA hydratase compare
Atu0486 -2.0 -5.3 dihydroorotate dehydrogenase compare
Atu3908 -2.0 -9.7 GntR family transcriptional regulator compare
Atu0141 -2.0 -2.0 cytochrome O ubiquinol oxidase subunit I compare
Atu2057 -2.0 -3.3 DNA helicase II compare
Atu2125 -1.9 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0679 -1.9 -6.2 ATP phosphoribosyltransferase compare
Atu2040 -1.9 -4.5 phosphoserine phosphatase compare
Atu3706 -1.9 -7.7 D-3-phosphoglycerate dehydrogenase compare
Atu3755 -1.9 -5.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0039 -1.9 -2.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu1446 -1.9 -2.3 two component response regulator compare
Atu3763 -1.8 -1.7 hypothetical protein compare
Atu1750 -1.8 -4.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu1644 -1.7 -3.2 hypothetical protein compare
Atu0876 -1.7 -2.1 superoxide dismutase compare
Atu0971 -1.7 -3.6 two component sensor kinase compare
Atu1308 -1.7 -5.3 aspartate carbamoyl transferase catalytic subunit compare
Atu1705 -1.7 -5.9 SEC-independent protein translocase protein compare
Atu1163 -1.7 -2.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1359 -1.7 -1.2 dnaK deletion suppressor protein compare
Atu0784 -1.7 -4.2 hypothetical protein compare
Atu2207 -1.6 -3.1 two component sensor kinase compare
Atu0703 -1.6 -3.5 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1364 -1.6 -4.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1513 -1.6 -5.0 ABC excinuclease subunit A compare
Atu0030 -1.5 -1.7 phosphocarrier protein HPr compare
Atu1646 -1.5 -4.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu1219 -1.5 -1.4 hypothetical protein compare
Atu0040 -1.5 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu5125 -1.5 -4.0 GntR family transcriptional regulator compare
Atu0043 -1.5 -2.2 imidazoleglycerol-phosphate dehydratase compare
Atu0184 -1.5 -2.0 glucokinase compare
Atu1141 -1.5 -5.2 Phosphoribosylglycinamide synthetase compare
Atu2239 -1.5 -3.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3754 -1.5 -2.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0894 -1.5 -2.6 ABC transporter, membrane spanning protein compare
Atu0031 -1.5 -1.4 PTS system, IIA component compare
Atu0647 -1.5 -5.1 phosphoribosylamine--glycine ligase compare
Atu2728 -1.4 -3.3 beta (1-->2) glucan export ATP-binding protein compare
Atu6165 -1.4 -1.1 hypothetical protein compare
Atu0086 -1.4 -1.5 ribosome-binding factor A compare
Atu0153 -1.4 -4.6 transcriptional regulator, Fur family compare
Atu2640 -1.4 -4.1 hypothetical protein compare
Atu1075 -1.4 -6.3 amidophosphoribosyltransferase compare
Atu1714 -1.4 -1.7 exonuclease III compare
Atu1647 -1.4 -4.8 ABC transporter, membrane spanning protein compare
Atu1205 -1.3 -7.7 threonine dehydratase compare
Atu2439 -1.3 -1.6 hypothetical protein compare
Atu1076 -1.3 -3.2 colicin V production protein compare
Atu1902 -1.3 -3.7 transketolase compare
Atu0354 -1.3 -2.3 ferric uptake regulator compare
Atu5164 -1.3 -1.0 type IV secretion protein AvhB3 compare
Atu1140 -1.3 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3885 -1.3 -5.7 inositol monophosphatase compare
Atu0331 -1.3 -3.0 sigma-54 modulation protein compare
Atu0205 -1.3 -7.0 methylmalonate-semialdehyde dehydrogenase compare
Atu2238 -1.2 -4.8 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1980 -1.2 -2.4 hypothetical protein compare
Atu1645 -1.2 -5.9 ABC transporter, substrate binding protein compare
Atu0977 -1.2 -4.4 serine protease DO-like protease compare
Atu2831 -1.2 -3.2 glucose inhibited division protein A compare
Atu0029 -1.2 -4.0 S-adenosylhomocysteine hydrolase compare
Atu2073 -1.2 -2.9 membrane protein compare
Atu3775 -1.1 -1.7 hypothetical protein compare
Atu4616 -1.1 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu2237 -1.1 -4.6 cytochrome c1 compare
Atu0050 -1.1 -4.4 two component response regulator compare
Atu1528 -1.1 -7.0 nitrogen fixation protein FixI compare
Atu1204 -1.1 -3.0 potassium uptake protein compare
Atu1468 -1.1 -4.9 hypothetical protein compare
Atu5010 -1.1 -2.5 hypothetical protein compare
Atu0723 -1.1 -1.5 FAD dependent oxidoreductase compare
Atu1470 -1.1 -1.3 Camphor resistance protein compare
Atu5115 -1.1 -1.6 hypothetical protein compare
Atu2662 -1.1 -1.2 acetyltransferase compare
Atu1129 -1.1 -3.7 excinuclease ABC chain C compare
Atu1844 -1.1 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1687 -1.0 -4.5 anthranilate phosphoribosyltransferase compare
Atu1534 -1.0 -4.4 cytochrome-c oxidase, FixP chain compare
Atu2718 -1.0 -4.1 homoserine O-succinyltransferase compare
Atu3009 -1.0 -1.6 exopolysaccharide production protein compare
Atu0051 -1.0 -3.7 two component sensor kinase compare
Atu0976 -1.0 -2.5 cycL protein compare
Atu2832 -1.0 -2.8 tRNA modification GTPase compare
Atu1173 -1.0 -5.7 MFS permease compare
Atu0413 -1.0 -1.5 stress induced protein compare
Atu0101 -1.0 -2.6 cytochrome c compare
Atu2650 -1.0 -5.8 glycerol-3-phosphate dehydrogenase compare
Atu1688 -1.0 -3.6 indole-3-glycerol-phosphate synthase compare
Atu0895 -1.0 -2.1 ABC transporter, substrate binding protein compare
Atu2821 -1.0 -3.1 transcriptional regulator, GntR family compare
Atu0269 -0.9 -2.9 exodeoxyribonuclease VII large subunit compare
Atu1074 -0.9 -4.5 NAD/NADP dependent oxidoreductase compare
Atu2790 -0.9 -2.0 3-isopropylmalate dehydratase, small subunit compare
Atu4711 -0.9 -4.4 two component sensor kinase compare
Atu2286 -0.9 -1.2 hypothetical protein compare
Atu0017 -0.9 -2.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1103 -0.9 -2.3 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2578 -0.9 -3.0 cAMP-dependent protein kinase regulatory subunit compare
Atu1447 -0.9 -1.6 two component sensor kinase compare
Atu4773 -0.9 -2.0 two component response regulator compare
Atu2289 -0.9 -6.6 anthranilate synthase component I and II compare
Atu2800 -0.9 -1.7 precorrin-3B C17-methyltransferase compare
Atu1677 -0.9 -2.9 queuine tRNA-ribosyltransferase compare
Atu0386 -0.9 -1.6 hypothetical protein compare
Atu4614 -0.9 -5.8 glycosyltransferase compare
Atu1529 -0.9 -2.6 nitrogen fixation protein FixH compare
Atu4618 -0.9 -5.7 dTDP-rhamnose-3,5-epimerase compare
Atu1530 -0.8 -4.9 nitrogen fixation protein FixG compare
Atu2555 -0.8 -2.2 L-lysine 2,3-aminomutase compare
Atu3353 -0.8 -4.5 mannose-1-phosphate guanylyltransferase compare
Atu4615 -0.8 -5.0 glucose-1-phosphate thymidylyltransferase compare
Atu0190 -0.8 -3.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1602 -0.8 -3.6 transcriptional activator, Crp family compare
Atu1021 -0.8 -1.8 outer membrane protein compare
Atu6098 -0.8 -0.5 transcriptional regulator, HTH family compare
Atu3815 -0.8 -2.9 GntR family transcriptional regulator compare
Atu2791 -0.8 -3.8 3-isopropylmalate dehydrogenase compare
Atu2113 -0.8 -1.2 N-acetylmuramoyl-L-alanine amidase compare
Atu2433 -0.8 -1.0 hypothetical protein compare
Atu2709 -0.8 -6.2 3-isopropylmalate dehydratase, large subunit compare
Atu1242 -0.8 -4.6 cytochrome oxidase assembly factor compare
Atu0099 -0.8 -4.8 prephenate dehydratase compare
Atu4610 -0.8 -4.6 sugar nucleotide epimerase/dehydratase compare
Atu2264 -0.8 -5.1 2-isopropylmalate synthase compare
Atu0142 -0.8 -2.1 cytochrome o ubiquinol oxidase subunit II compare
Atu3311 -0.8 -6.2 phosphomannose isomerase compare
Atu8118 -0.8 -3.0 putative universal stress protein compare
Atu0401 -0.8 -3.7 fructokinase compare
Atu6036 -0.8 -0.6 entry-exclusion protein compare
Atu3732 -0.7 -4.8 hemolysin compare
Atu1537 -0.7 -4.5 cytochrome-c oxidase, FixN chain compare
Atu3572 -0.7 -3.1 transcriptional regulator compare
Atu0432 -0.7 -2.5 O-succinylhomoserine sulfhydrylase compare
Atu4418 -0.7 -2.6 glutaryl-CoA dehydrogenase compare
Atu1619 -0.7 -1.5 protein-export membrane protein SECG compare
Atu0923 -0.7 -2.8 hypothetical protein compare
Atu5124 -0.7 -4.8 glutamate-1-semialdehyde aminotransferase compare
Atu1810 -0.7 -0.8 hypothetical protein compare
Atu3598 -0.7 -1.4 thiol:disulfide interchange protein compare
Atu1760 -0.7 -0.9 hypothetical protein compare
Atu0346 -0.7 -1.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3443 -0.7 -2.8 hypothetical protein compare
Atu2827 -0.7 -2.0 hypothetical protein compare
Atu2258 -0.7 -1.6 acetyltransferase compare
Atu0502 -0.7 -2.3 acetyl-CoA acetyltransferase compare
Atu3486 -0.7 -1.8 DeoR family transcriptional regulator compare
Atu2803 -0.7 -2.6 Cobalamin biosynthesis associated protein compare
Atu5144 -0.7 -2.6 putative peptidase compare
Atu5075 -0.7 -2.6 GntR family transcriptional regulator compare
Atu0846 -0.7 -2.0 transcriptional regulator, MarR family compare
Atu2183 -0.7 -3.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu5498 -0.7 -3.1 oxidoreductase with iron-sulfur subunit compare
Atu4346 -0.7 -3.2 hypothetical protein compare
Atu2807 -0.7 -3.0 cob(I)alamin adenosyltransferase compare
Atu3744 -0.7 -3.7 ABC transporter permease compare
Atu1580 -0.7 -4.5 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu4099 -0.7 -3.2 hypothetical protein compare
Atu1535 -0.7 -1.4 cytochrome c oxidase, FixQ chain compare
Atu2796 -0.7 -3.5 precorrin-4 C11-methyltransferase compare
Atu2808 -0.7 -3.5 cobyric acid synthase compare
Atu3739 -0.7 -1.0 phosphoglycerate kinase compare
Atu1527 -0.7 -2.3 nitrogen fixation protein FixS compare
Atu0188 -0.7 -1.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3519 -0.6 -4.0 peptidyl-prolyl cis-trans isomerase compare
Atu2184 -0.6 -3.1 transcriptional regulator, AsnC family compare
Atu0368 -0.6 -2.9 tRNA pseudouridine synthase I compare
Atu1536 -0.6 -2.4 cytochrome C oxidase, FixO chain compare
Atu0185 -0.6 -1.8 methylglyoxal synthase compare
Atu8167 -0.6 -4.1 putative transmembrane protein compare
Atu3727 -0.6 -2.0 hypothetical protein compare
Atu0660 -0.6 -3.5 hydrolase compare
Atu0499 -0.6 -3.2 hypothetical protein compare
Atu1679 -0.6 -1.3 peptidyl prolyl cis-trans isomerase compare
Atu4072 -0.6 -0.7 nodulation protein N compare
Atu4446 -0.6 -3.5 hypothetical protein compare
Atu1327 -0.6 -1.6 NADH-ubiquinone oxidoreductase compare
Atu3750 -0.6 -1.2 thiamine-phosphate pyrophosphorylase compare
Atu8145 -0.6 -2.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms