Experiment set12IT038 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most detrimental genes:

  gene name fitness t score description  
Atu8054 +1.7 2.3 hypothetical protein compare
Atu0640 +1.1 2.0 hypothetical protein compare
Atu1952 +1.0 1.5 hypothetical protein compare
Atu5475 +0.9 2.4 hypothetical protein compare
Atu0421 +0.8 1.9 ABC transporter, membrane spanning protein compare
Atu8088 +0.8 1.7 hypothetical protein compare
Atu1225 +0.8 1.8 hypothetical protein compare
Atu0382 +0.8 2.8 hypothetical protein compare
Atu5471 +0.7 2.1 hypothetical protein compare
Atu2462 +0.7 2.1 hypothetical protein compare
Atu4897 +0.7 1.7 hypothetical protein compare
Atu8056 +0.7 1.1 hypothetical protein compare
Atu8052 +0.7 1.4 hypothetical protein compare
Atu3468 +0.7 0.9 hypothetical protein compare
Atu6106 +0.6 2.2 conserved hypothetical protein compare
Atu8177 +0.6 2.1 hypothetical protein compare
Atu3780 +0.6 3.5 hypothetical protein compare
Atu3122 +0.6 2.5 cold shock protein compare
Atu0925 +0.6 2.7 hypothetical protein compare
Atu2352 +0.6 1.5 hypothetical protein compare
Atu1056 +0.6 2.4 hypothetical protein compare
Atu4469 +0.6 2.2 iron ABC transporter permease compare
Atu1190 +0.6 2.2 hypothetical protein compare
Atu6104 +0.6 1.8 conserved hypothetical protein compare
Atu1499 +0.6 3.8 penicillin binding protein compare
Atu1223 +0.6 1.0 hypothetical protein compare
Atu1692 +0.6 1.6 hypothetical protein compare
Atu1897 +0.6 1.7 short chain dehydrogenase compare
Atu2204 +0.6 1.2 hypothetical protein compare
Atu1888 +0.5 3.4 two component sensor kinase compare
Atu0134 +0.5 2.0 hypothetical protein compare
Atu0888 +0.5 1.8 transcriptional regulator, MerR family compare
Atu0566 +0.5 1.2 hypothetical protein compare
Atu6112 +0.5 1.9 conserved hypothetical protein compare
Atu5034 +0.5 1.2 hypothetical protein compare
Atu0464 +0.5 3.0 hypothetical protein compare
Atu2441 +0.5 2.0 RNA methylase compare
Atu1970 +0.5 2.0 hypothetical protein compare
Atu0479 +0.5 2.7 ABC transporter, substrate binding protein (amino acid) compare
Atu0435 +0.5 1.4 tRNA-Gly compare
Atu1149 +0.5 1.2 adenylate cyclase compare
Atu1435 +0.5 2.0 hypothetical protein compare
Atu2317 +0.5 2.2 hypothetical protein compare
Atu3999 +0.5 1.5 dithiobiotin synthetase compare
Atu5121 +0.5 3.5 two component response regulator compare
Atu3465 +0.5 1.4 metallo-beta-lactamase superfamily protein compare
Atu8087 +0.5 0.7 putative peptidoglycan binding protein compare
Atu0746 +0.5 2.2 hypothetical protein compare
Atu2116 +0.5 1.8 hypothetical protein compare
Atu8023 +0.5 1.5 hypothetical protein compare
Atu1996 +0.5 2.5 hypothetical protein compare
Atu4896 +0.5 1.3 acetyltransferase compare
Atu3114 +0.5 3.0 sugar ABC transporter substrate-binding protein compare
Atu0471 +0.5 1.7 hypothetical protein compare
Atu4159 +0.5 1.2 AsnC family transcriptional regulator compare
Atu3006 +0.5 2.1 hypothetical protein compare
Atu4677 +0.5 0.8 hypothetical protein compare
Atu2737 +0.5 1.8 oxidoredutase compare
Atu1260 +0.5 0.9 hypothetical protein compare
Atu3345 +0.4 1.7 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu6153 +0.4 1.4 conserved hypothetical protein compare
Atu3759 +0.4 0.8 hypothetical protein compare
Atu2421 +0.4 2.0 chitooligosaccharide deacetylase compare
Atu8170 +0.4 0.9 hypothetical protein compare
Atu1241 +0.4 1.2 hypothetical protein compare
Atu2114 +0.4 1.4 molecular chaperone, DnaJ family compare
Atu0926 +0.4 2.2 hypothetical protein compare
Atu3093 +0.4 2.7 transglycosylase compare
Atu5007 +0.4 2.4 santhopine-responsive transcriptional repressor compare
Atu4779 +0.4 2.5 hypothetical protein compare
Atu5467 +0.4 1.3 hypothetical protein compare
Atu1831 +0.4 1.6 hypothetical protein compare
Atu5451 +0.4 0.6 hypothetical protein compare
Atu0105 +0.4 0.6 hypothetical protein compare
Atu8018 +0.4 0.5 hypothetical protein compare
Atu0562 +0.4 1.4 flagellar motor switch protein FliN compare
Atu1487 +0.4 1.9 hypothetical protein compare
Atu0528 +0.4 1.1 large conductance mechanosensitive channel protein compare
Atu1325 +0.4 1.9 acetyltransferase compare
Atu4200 +0.4 1.0 hypothetical protein compare
Atu2620 +0.4 0.7 hypothetical protein compare
Atu0806 +0.4 2.5 hypothetical protein compare
Atu6039 +0.4 0.9 conjugal transfer protein compare
Atu2531 +0.4 2.3 actinorhodin polyketide dimerase compare
Atu2296 +0.4 2.5 2-dehydro-3-deoxygluconokinase compare
Atu4160 +0.4 2.0 RNA polymerase sigma factor compare
Atu5494 +0.4 2.0 hypothetical protein compare
Atu1756 +0.4 1.7 hypothetical protein compare
Atu2068 +0.4 1.1 hypothetical protein compare
Atu8203 +0.4 1.6 hypothetical protein compare
Atu0912 +0.4 0.6 Na+/H+ antiporter compare
Atu8128 +0.4 2.4 putative bacteriophage P2 tail protein compare
Atu1590 +0.4 2.0 inosine-uridine preferring nucleoside hydrolase compare
Atu2678 +0.4 1.9 2'-5' RNA ligase compare
Atu1500 +0.4 1.3 rare lipoprotein A compare
Atu5540 +0.4 0.5 hypothetical protein compare
Atu4792 +0.4 1.1 hypothetical protein compare
Atu8083 +0.4 2.9 hypothetical protein compare
Atu1734 +0.4 1.1 hypothetical protein compare
Atu2028 +0.4 1.4 transcriptional regulator, ArsR family compare
Atu0931 +0.4 2.8 penicillin binding protein compare
Atu6066 +0.4 2.0 acyl-CoA dehydrogenase compare
Atu0796 +0.4 1.8 putative peptidase compare
Atu6159 +0.4 0.7 hypothetical protein compare
Atu3136 +0.4 2.4 ABC transporter permease compare
Atu0654 +0.4 1.9 transcriptional regulator, LysR family compare
Atu0763 +0.4 1.4 hydrolase compare
Atu1608 +0.4 1.9 hypothetical protein compare
Atu1531 +0.4 1.5 hypothetical protein compare
Atu4162 +0.4 2.4 two-component response regulator compare
Atu4190 +0.4 2.1 calcium-binding protein, regucalcin compare
Atu1551 +0.4 1.9 hypothetical protein compare
Atu5468 +0.4 1.3 hypothetical protein compare
Atu0762 +0.4 1.1 hypothetical protein compare
Atu3084 +0.4 2.8 RNA polymerase sigma factor compare
Atu0943 +0.4 0.6 hypothetical protein compare
Atu0008 +0.4 1.4 hypothetical protein compare
Atu3628 +0.4 1.7 hypothetical protein compare
Atu0427 +0.4 1.0 hypothetical protein compare
Atu6107 +0.4 1.7 hypothetical protein compare
Atu3886 +0.4 2.0 lysophospholipase compare
Atu0460 +0.4 1.9 hypothetical protein compare
Atu5207 +0.4 1.9 hypothetical protein compare
Atu2209 +0.4 1.1 pyrroline-5-carboxylate reductase compare
Atu4452 +0.3 1.4 hypothetical protein compare
Atu2509 +0.3 2.0 sugar kinase compare
Atu0836 +0.3 0.9 Glutathione-S-transferase compare
Atu3515 +0.3 1.3 hypothetical protein compare
Atu6040 +0.3 1.1 conjugal transfer protein compare
Atu0901 +0.3 1.9 6-O-methylguanine-DNA methyltransferase compare
Atu3130 +0.3 2.4 sugar ABC transporter substrate-binding protein compare
Atu1189 +0.3 0.8 hypothetical protein compare
Atu4674 +0.3 2.0 GntR family transcriptional regulator compare
Atu3011 +0.3 1.2 ArsR family transcriptional regulator compare
Atu5415 +0.3 2.2 hypothetical protein compare
Atu4407 +0.3 1.3 periplasmic nitrate reductase, NapD protein compare
Atu1782 +0.3 1.2 hypothetical protein compare
Atu8180 +0.3 2.2 hypothetical protein compare
Atu4025 +0.3 1.9 ferrichrome ABC transporter ATPase compare
Atu0453 +0.3 2.3 hypothetical protein compare
Atu0948 +0.3 1.2 hypothetical protein compare
Atu8141 +0.3 1.6 hypothetical protein compare
Atu1482 +0.3 1.0 hypothetical protein compare
Atu2244 +0.3 1.9 tRNA/rRNA methyltransferase compare
Atu1694 +0.3 1.1 hypothetical protein compare
Atu3482 +0.3 1.7 pantoate--beta-alanine ligase compare
Atu1916 +0.3 0.8 hypothetical protein compare
Atu0681 +0.3 1.8 hypothetical protein compare
Atu2344 +0.3 1.2 lactoylglutathione lyase compare
Atu0725 +0.3 1.5 hypothetical protein compare
Atu3779 +0.3 1.8 lytic murein transglycosylase compare
Atu3864 +0.3 1.5 hypothetical protein compare
Atu1336 +0.3 1.2 hypothetical protein compare
Atu4187 +0.3 0.5 tRNA-Met compare
Atu3807 +0.3 1.9 AsnC family transcriptional regulator compare
Atu3746 +0.3 0.8 hypothetical protein compare
Atu1038 +0.3 1.4 two component response regulator compare
Atu3427 +0.3 1.7 hypothetical protein compare
Atu2410 +0.3 1.4 ABC transporter, nucleotide binding/ATPase protein (urea/amide) compare
Atu1785 +0.3 1.5 acetyltransferase compare
Atu4214 +0.3 1.3 cold shock protein compare
Atu1558 +0.3 1.6 permease compare
Atu0573 +0.3 1.8 transcriptional regulator compare
Atu2016 +0.3 1.9 hypothetical protein compare
Atu6164 +0.3 1.7 trans-zeatin secretion protein compare
Atu2163 +0.3 0.5 hypothetical protein compare
Atu0809 +0.3 0.7 hypothetical protein compare
Atu8133 +0.3 0.7 hypothetical protein compare
Atu1311 +0.3 1.5 acetyltransferase compare
Atu5421 +0.3 1.8 ABC transporter membrane spanning protein (putrescine) compare
Atu4630 +0.3 1.0 hypothetical protein compare
Atu0955 +0.3 1.3 hypothetical protein compare
Atu1662 +0.3 1.8 hypothetical protein compare
Atu0966 +0.3 0.9 hypothetical protein compare
Atu5028 +0.3 1.2 IS426 transposase compare
Atu0551 +0.3 0.8 flagellar protein FLGA precursor compare
Atu2476 +0.3 2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu1801 +0.3 1.1 hypothetical protein compare
Atu4568 +0.3 1.7 ABC transporter substrate binding protein compare
Atu0721 +0.3 2.1 hypothetical protein compare
Atu6052 +0.3 2.1 conserved hypothetical protein compare
Atu1320 +0.3 1.7 acetyltransferase compare
Atu2200 +0.3 1.1 cold shock protein compare
Atu2002 +0.3 1.2 esterase/lipase compare
Atu2657 +0.3 1.2 hypothetical protein compare
Atu6123 +0.3 1.4 conserved hypothetical protein compare
Atu4784 +0.3 1.8 ABC transporter substrate-binding protein compare
Atu0467 +0.3 0.8 hypothetical protein compare
Atu6065 +0.3 1.3 conserved hypothetical protein compare
Atu0436 +0.3 2.1 hypothetical protein compare
Atu0525 +0.3 1.0 transcriptional regulator, LuxR family compare
Atu3064 +0.3 1.7 ABC transporter permease compare
Atu3106 +0.3 1.9 sugar ABC transporter substrate-binding protein compare
Atu1908 +0.3 1.6 hypothetical protein compare
Atu1023 +0.3 0.7 hypothetical protein compare
Atu3081 +0.3 2.4 hypothetical protein compare
Atu0781 +0.3 1.1 hypothetical protein compare
Atu4893 +0.3 1.7 hypothetical protein compare
Atu0885 +0.3 1.1 hypothetical protein compare
Atu0782 +0.3 1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms