Experiment set12IT036 for Pseudomonas putida KT2440

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Beta-alanine carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_0595 -7.8 -5.4 Transcriptional regulator, LysR family conserved
PP_0597 -7.3 -11.2 methylmalonate-semialdehyde dehydrogenase conserved
PP_5271 -6.1 -9.5 DNA-binding transcriptional dual regulator, leucine-binding conserved
PP_0596 -5.5 -14.5 Omega-amino acid--pyruvate aminotransferase conserved
PP_0413 -5.2 -16.6 Polyamine ABC transporter, permease protein compare
PP_0414 -4.8 -5.9 Polyamine ABC transporter, permease protein compare
PP_0411 -4.1 -7.7 Polyamine ABC transporter, ATP-binding protein compare
PP_0412 -3.8 -8.1 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_0410 -3.6 -5.7 DNA-binding response regulator UhpA compare
PP_5270 -3.6 -7.1 D-amino-acid:quinone oxidoreductase (deaminating) conserved
PP_0409 -1.7 -5.6 Sensory box histidine kinase compare
PP_1984 -1.6 -5.8 Transcriptional regulator, LysR family conserved
PP_0988 -1.5 -8.5 glycine dehydrogenase compare
PP_0248 -1.4 -9.3 Probable alpha-L-glutamate ligase compare
PP_4863 -1.3 -7.5 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_4864 -1.3 -7.5 High-affinity branched-chain amino acid transport ATP-binding protein BraF compare
PP_4865 -1.3 -7.2 High-affinity branched-chain amino acid transport system permease protein BraE compare
PP_0997 -1.3 -6.0 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_4866 -1.2 -7.4 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_4947 +2.0 17.6 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare


Specific phenotypes for carbon source Beta-alanine across organisms