Experiment set12IT036 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu4616 -5.8 -2.9 dTDP-4-dehydrorhamnose reductase compare
Atu3730 -4.4 -2.2 hypothetical protein compare
Atu0769 -4.3 -2.5 protoheme IX farnesyltransferase compare
Atu4072 -4.2 -2.6 nodulation protein N compare
Atu2439 -3.8 -1.6 hypothetical protein compare
Atu1030 -3.5 -2.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1513 -3.3 -7.1 ABC excinuclease subunit A compare
Atu0039 -3.2 -3.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu2036 -3.2 -12.5 acetolactate synthase III, large subunit compare
Atu2017 -3.2 -1.3 hypothetical protein compare
Atu0399 -3.1 -6.9 dihydroorotase compare
Atu3763 -3.1 -1.8 hypothetical protein compare
Atu2040 -3.0 -5.3 phosphoserine phosphatase compare
Atu0537 -2.9 -6.4 histidinol dehydrogenase compare
Atu0419 -2.8 -2.6 two component sensor kinase compare
Atu0041 -2.7 -2.6 glutamine amidotransferase compare
Atu4317 -2.6 -3.2 TetR family transcriptional regulator compare
Atu3754 -2.6 -3.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3707 -2.6 -3.4 phosphoserine aminotransferase compare
Atu0434 -2.5 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2442 -2.5 -1.9 hypothetical protein compare
Atu0017 -2.4 -4.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0031 -2.4 -1.4 PTS system, IIA component compare
Atu0331 -2.4 -3.4 sigma-54 modulation protein compare
Atu0723 -2.4 -2.4 FAD dependent oxidoreductase compare
Atu0422 -2.4 -2.4 ABC transporter, membrane spanning protein compare
Atu3469 -2.3 -3.0 phosphoglyceromutase compare
Atu1588 -2.3 -7.9 homoserine dehydrogenase compare
Atu0679 -2.3 -5.6 ATP phosphoribosyltransferase compare
Atu6036 -2.3 -1.6 entry-exclusion protein compare
Atu0086 -2.3 -1.6 ribosome-binding factor A compare
Atu0040 -2.2 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0894 -2.2 -3.1 ABC transporter, membrane spanning protein compare
Atu2554 -2.2 -2.7 lysyl-tRNA synthetase compare
Atu2067 -2.2 -1.1 hypothetical protein compare
Atu0895 -2.1 -3.5 ABC transporter, substrate binding protein compare
Atu1359 -2.1 -1.1 dnaK deletion suppressor protein compare
Atu1845 -2.1 -4.4 phosphoribosylformylglycinamidine synthase I compare
Atu1028 -2.0 -2.2 hypothetical protein compare
Atu2728 -2.0 -4.1 beta (1-->2) glucan export ATP-binding protein compare
Atu1327 -2.0 -2.8 NADH-ubiquinone oxidoreductase compare
Atu3755 -2.0 -4.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0189 -2.0 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0971 -2.0 -3.5 two component sensor kinase compare
Atu0115 -1.9 -1.1 hypothetical protein compare
Atu1810 -1.9 -1.1 hypothetical protein compare
Atu1750 -1.9 -2.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu2057 -1.9 -1.9 DNA helicase II compare
Atu0038 -1.8 -4.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu6098 -1.8 -1.1 transcriptional regulator, HTH family compare
Atu1307 -1.8 -4.1 dihydroorotase compare
Atu1129 -1.8 -7.1 excinuclease ABC chain C compare
Atu0678 -1.8 -5.3 histidyl-tRNA synthetase compare
Atu1417 -1.7 -5.2 enoyl-CoA hydratase compare
Atu1647 -1.7 -5.3 ABC transporter, membrane spanning protein compare
Atu0486 -1.6 -4.6 dihydroorotate dehydrogenase compare
Atu3353 -1.6 -7.7 mannose-1-phosphate guanylyltransferase compare
Atu3706 -1.6 -4.3 D-3-phosphoglycerate dehydrogenase compare
Atu1645 -1.6 -6.5 ABC transporter, substrate binding protein compare
Atu3311 -1.6 -9.5 phosphomannose isomerase compare
Atu2239 -1.6 -2.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1644 -1.5 -1.8 hypothetical protein compare
Atu1646 -1.5 -4.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu0298 -1.5 -4.5 orotidine 5 compare
Atu2207 -1.5 -2.2 two component sensor kinase compare
Atu4773 -1.5 -1.3 two component response regulator compare
Atu3712 -1.5 -1.0 hypothetical protein compare
Atu5125 -1.5 -4.5 GntR family transcriptional regulator compare
Atu1141 -1.5 -4.8 Phosphoribosylglycinamide synthetase compare
Atu3885 -1.5 -4.7 inositol monophosphatase compare
Atu2555 -1.5 -2.1 L-lysine 2,3-aminomutase compare
Atu0784 -1.4 -2.3 hypothetical protein compare
Atu2800 -1.4 -1.6 precorrin-3B C17-methyltransferase compare
Atu4617 -1.4 -6.4 dTDP-D-glucose-4,6-dehydratase compare
Atu0703 -1.4 -2.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1679 -1.4 -1.6 peptidyl prolyl cis-trans isomerase compare
Atu4166 -1.4 -1.9 UDP-glucose 4-epimerase compare
Atu4614 -1.4 -6.2 glycosyltransferase compare
Atu4148 -1.3 -3.7 UDP-glucuronic acid epimerase compare
Atu4139 -1.3 -1.6 hypothetical protein compare
Atu2183 -1.3 -6.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4615 -1.3 -6.2 glucose-1-phosphate thymidylyltransferase compare
Atu4618 -1.3 -5.8 dTDP-rhamnose-3,5-epimerase compare
Atu0269 -1.3 -3.2 exodeoxyribonuclease VII large subunit compare
Atu2718 -1.3 -3.6 homoserine O-succinyltransferase compare
Atu1075 -1.3 -3.8 amidophosphoribosyltransferase compare
Atu2616 -1.3 -4.9 hypothetical protein compare
Atu1470 -1.2 -0.9 Camphor resistance protein compare
Atu2125 -1.2 -1.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0051 -1.2 -3.4 two component sensor kinase compare
Atu3496 -1.2 -2.9 hypothetical protein compare
Atu1677 -1.2 -3.5 queuine tRNA-ribosyltransferase compare
Atu3120 -1.2 -1.0 hypothetical protein compare
Atu0893 -1.2 -3.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1308 -1.2 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu3739 -1.2 -2.1 phosphoglycerate kinase compare
Atu2052 -1.2 -3.4 hypothetical protein compare
Atu1258 -1.2 -2.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu2615 -1.2 -3.7 hypothetical protein compare
Atu0361 -1.2 -2.5 transcriptional regulator compare
Atu0687 -1.2 -1.3 hypothetical protein compare
Atu0876 -1.1 -1.1 superoxide dismutase compare
Atu4458 -1.1 -1.6 hypothetical protein compare
Atu0043 -1.1 -1.8 imidazoleglycerol-phosphate dehydratase compare
Atu2204 -1.1 -1.6 hypothetical protein compare
Atu1219 -1.1 -0.7 hypothetical protein compare
Atu2526 -1.1 -3.6 hypothetical protein compare
Atu4613 -1.1 -6.1 glycosyltransferase compare
Atu3267 -1.1 -2.4 dipeptide ABC transporter permease compare
Atu3908 -1.1 -4.9 GntR family transcriptional regulator compare
Atu0923 -1.1 -4.1 hypothetical protein compare
Atu1892 -1.1 -2.5 hypothetical protein compare
Atu2001 -1.1 -3.6 excinuclease ABC subunit B compare
Atu0647 -1.1 -3.2 phosphoribosylamine--glycine ligase compare
Atu1844 -1.1 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1364 -1.1 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu6020 -1.1 -2.8 conserved hypothetical protein compare
Atu1705 -1.0 -3.1 SEC-independent protein translocase protein compare
Atu4610 -1.0 -5.8 sugar nucleotide epimerase/dehydratase compare
Atu0050 -1.0 -3.1 two component response regulator compare
Atu1026 -1.0 -1.1 hypothetical protein compare
Atu1177 -1.0 -2.2 hypothetical protein compare
Atu3012 -1.0 -1.4 hypothetical protein compare
Atu0432 -1.0 -3.7 O-succinylhomoserine sulfhydrylase compare
Atu2824 -1.0 -2.7 hypothetical protein compare
Atu0912 -1.0 -0.8 Na+/H+ antiporter compare
Atu2450 -1.0 -2.1 hypothetical protein compare
Atu1149 -0.9 -0.9 adenylate cyclase compare
Atu1344 -0.9 -1.3 hypothetical protein compare
Atu2379 -0.9 -4.2 phosphomannomutase compare
Atu0488 -0.9 -1.9 hypothetical protein compare
Atu6019 -0.9 -6.7 D-nopaline dehydrogenase compare
Atu0386 -0.9 -1.3 hypothetical protein compare
Atu1511 -0.9 -1.7 hypothetical protein compare
Atu2200 -0.9 -1.3 cold shock protein compare
Atu3248 -0.9 -3.4 cell division inhibitor compare
Atu4391 -0.9 -1.7 nitric oxide reductase NorE protein compare
Atu2640 -0.9 -2.7 hypothetical protein compare
Atu2289 -0.9 -5.2 anthranilate synthase component I and II compare
Atu0101 -0.9 -1.7 cytochrome c compare
Atu3718 -0.9 -2.9 hypothetical protein compare
Atu1688 -0.9 -3.0 indole-3-glycerol-phosphate synthase compare
Atu1205 -0.9 -4.8 threonine dehydratase compare
Atu1902 -0.9 -2.8 transketolase compare
Atu3507 -0.9 -1.9 hypothetical protein compare
Atu2464 -0.9 -1.6 formyltetrahydrofolate deformylase compare
Atu8191 -0.8 -1.1 hypothetical protein compare
Atu8144 -0.8 -1.4 hypothetical protein compare
Atu1891 -0.8 -1.6 cobalamin biosynthesis protein compare
Atu3299 -0.8 -1.7 hypothetical protein compare
Atu0401 -0.8 -3.1 fructokinase compare
Atu3144 -0.8 -2.3 GntR family transcriptional regulator compare
Atu0153 -0.8 -2.5 transcriptional regulator, Fur family compare
Atu1687 -0.8 -3.7 anthranilate phosphoribosyltransferase compare
Atu2073 -0.8 -2.6 membrane protein compare
Atu1714 -0.8 -0.9 exonuclease III compare
Atu8047 -0.8 -2.7 hypothetical protein compare
Atu1850 -0.8 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu0036 -0.8 -1.0 hypothetical protein compare
Atu1904 -0.8 -1.6 transcriptional regulator compare
Atu2662 -0.8 -0.8 acetyltransferase compare
Atu8167 -0.8 -3.9 putative transmembrane protein compare
Atu3704 -0.8 -3.2 hypothetical protein compare
Atu4711 -0.8 -2.0 two component sensor kinase compare
Atu3609 -0.8 -2.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu0141 -0.8 -0.7 cytochrome O ubiquinol oxidase subunit I compare
Atu3517 -0.8 -1.8 acetyltransferase compare
Atu0346 -0.8 -1.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3634 -0.8 -2.5 penicillin-binding protein dacf precursor compare
Atu0029 -0.8 -2.5 S-adenosylhomocysteine hydrolase compare
Atu0142 -0.8 -1.4 cytochrome o ubiquinol oxidase subunit II compare
Atu6021 -0.8 -5.0 D-nopaline dehydrogenase compare
Atu6045 -0.8 -1.2 replication protein C compare
Atu0979 -0.8 -3.8 two component sensor kinase compare
Atu1602 -0.8 -3.4 transcriptional activator, Crp family compare
Atu5010 -0.8 -1.4 hypothetical protein compare
Atu0977 -0.8 -2.2 serine protease DO-like protease compare
Atu1076 -0.8 -1.9 colicin V production protein compare
Atu2591 -0.8 -2.5 glucosyltransferase compare
Atu0746 -0.7 -1.4 hypothetical protein compare
Atu3001 -0.7 -1.3 hypothetical protein compare
Atu8035 -0.7 -1.0 hypothetical protein compare
Atu8161 -0.7 -0.7 hypothetical protein compare
Atu1110 -0.7 -1.4 cytosol aminopeptidase compare
Atu5160 -0.7 -1.9 transcriptional regulator protein compare
Atu0562 -0.7 -1.2 flagellar motor switch protein FliN compare
Atu5124 -0.7 -5.4 glutamate-1-semialdehyde aminotransferase compare
Atu0201 -0.7 -1.1 hypothetical protein compare
Atu2522 -0.7 -4.1 agrobacterium chromosomal virulence protein B compare
Atu4149 -0.7 -3.8 UDP-glucose 6-dehydrogenase compare
Atu0660 -0.7 -3.1 hydrolase compare
Atu0499 -0.7 -3.0 hypothetical protein compare
Atu0030 -0.7 -0.8 phosphocarrier protein HPr compare
Atu3834 -0.7 -2.7 hypothetical protein compare
Atu1518 -0.7 -1.8 transcriptional regulator, Fur family compare
Atu0400 -0.7 -1.3 orotate phosphoribosyltransferase compare
Atu0976 -0.7 -1.5 cycL protein compare
Atu0185 -0.7 -1.5 methylglyoxal synthase compare
Atu0471 -0.7 -1.4 hypothetical protein compare
Atu4176 -0.7 -2.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms