| | gene | name | fitness | t score | description | |
|---|
| b2317 | dedA | -5.5 | -5.3 | conserved inner membrane protein (NCBI) | compare |
| b2038 | rfbC | -5.4 | -3.7 | dTDP-4-deoxyrhamnose-3,5-epimerase (NCBI) | compare |
| b1334 | fnr | -5.1 | -3.5 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b2040 | rfbD | -5.0 | -4.9 | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | compare |
| b2188 | yejM | -4.8 | -9.1 | predicted hydrolase, inner membrane (NCBI) | compare |
| b2512 | yfgL | -4.6 | -3.2 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b2259 | pmrD | -4.5 | -1.4 | polymyxin resistance protein B (VIMSS) | compare |
| b2617 | smpA | -4.4 | -4.1 | small membrane protein A (VIMSS) | compare |
| b0178 | hlpA | -4.2 | -5.2 | periplasmic chaperone (NCBI) | compare |
| b0957 | ompA | -3.9 | -5.3 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b3199 | yrbK | -3.9 | -3.4 | hypothetical protein (NCBI) | compare |
| b3784 | rfe | -3.7 | -15.6 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b3794 | rffM | -3.7 | -8.4 | putative UDP-N-acetyl-D-mannosaminuronic acid transferase (NCBI) | compare |
| b1256 | ompW | -3.6 | -11.2 | outer membrane protein W (NCBI) | compare |
| b3842 | rfaH | -3.6 | -3.5 | transcriptional activator RfaH (NCBI) | compare |
| b1677 | lpp | -3.4 | -2.8 | murein lipoprotein (NCBI) | compare |
| b1192 | ldcA | -3.4 | -7.5 | L,D-carboxypeptidase A (NCBI) | compare |
| b3787 | rffD | -3.3 | -13.4 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b1830 | prc | -3.2 | -5.3 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3778 | rep | -3.2 | -5.4 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b3791 | rffA | -3.2 | -8.2 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b4481 | rffT | -3.2 | -7.5 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b0929 | ompF | -3.1 | -8.5 | outer membrane porin 1a (Ia;b;F) (NCBI) | compare |
| b3786 | rffE | -3.1 | -15.5 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b2531 | iscR | -3.1 | -2.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0082 | mraW | -3.1 | -4.6 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3790 | rffC | -3.1 | -6.0 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b0053 | surA | -3.0 | -4.5 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b1855 | lpxM | -2.9 | -7.3 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b3627 | rfaI | -2.8 | -1.9 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b3620 | rfaF | -2.8 | -3.3 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b0145 | dksA | -2.8 | -1.9 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2571 | rseB | -2.7 | -6.9 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b3052 | rfaE | -2.7 | -5.1 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3035 | tolC | -2.7 | -9.6 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b0840 | deoR | -2.7 | -4.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3628 | rfaB | -2.6 | -2.6 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b0741 | pal | -2.6 | -3.5 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1613 | manA | -2.6 | -2.4 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b3387 | dam | -2.5 | -13.0 | DNA adenine methylase (NCBI) | compare |
| b3630 | rfaP | -2.5 | -2.5 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3375 | yhfR | -2.5 | -7.9 | putative transcriptional regulator (VIMSS) | compare |
| b0222 | lpcA | -2.4 | -3.2 | phosphoheptose isomerase (NCBI) | compare |
| b2572 | rseA | -2.4 | -5.1 | anti-sigma factor (NCBI) | compare |
| b3163 | nlpI | -2.4 | -5.2 | hypothetical protein (NCBI) | compare |
| b3792 | wzxE | -2.3 | -6.4 | O-antigen translocase (NCBI) | compare |
| b0739 | tolA | -2.2 | -1.5 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b3621 | rfaC | -2.2 | -3.7 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b2620 | smpB | -2.2 | -1.3 | SsrA-binding protein (NCBI) | compare |
| b3613 | yibP | -2.1 | -1.5 | putative membrane protein (VIMSS) | compare |
| b2808 | gcvA | -2.0 | -4.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4676 | yoaK | -2.0 | -0.8 | expressed protein (RefSeq) | compare |
| b2501 | ppk | -2.0 | -8.4 | polyphosphate kinase (NCBI) | compare |
| b1863 | ruvC | -1.9 | -2.5 | Holliday junction resolvase (NCBI) | compare |
| b0436 | tig | -1.9 | -5.2 | trigger factor (NCBI) | compare |
| b2064 | asmA | -1.9 | -6.2 | predicted assembly protein (NCBI) | compare |
| b4171 | miaA | -1.9 | -2.2 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b3632 | rfaQ | -1.8 | -14.2 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0049 | apaH | -1.8 | -3.2 | diadenosinetetraphosphatase (NCBI) | compare |
| b2017 | yefM | -1.8 | -0.8 | orf, hypothetical protein (VIMSS) | compare |
| b0737 | tolQ | -1.8 | -2.1 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1095 | fabF | -1.8 | -5.3 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b0740 | tolB | -1.8 | -4.7 | translocation protein TolB precursor (NCBI) | compare |
| b3839 | tatC | -1.8 | -6.8 | TatABCE protein translocation system subunit (NCBI) | compare |
| b0065 | yabI | -1.7 | -4.5 | conserved inner membrane protein (NCBI) | compare |
| b3026 | qseC | -1.7 | -1.6 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0018 | mokC | -1.7 | -1.2 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b0200 | gmhB | -1.6 | -1.1 | hypothetical protein (NCBI) | compare |
| b2830 | nudH | -1.6 | -1.1 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3619 | rfaD | -1.6 | -3.0 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b0688 | pgm | -1.6 | -3.3 | phosphoglucomutase (NCBI) | compare |
| b0759 | galE | -1.6 | -5.2 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b4603 | rseX | -1.6 | -0.6 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3934 | cytR | -1.6 | -5.6 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3192 | yrbC | -1.5 | -6.2 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b0617 | citD | -1.5 | -2.7 | citrate lyase, acyl carrier (gamma) subunit (NCBI) | compare |
| b2346 | vacJ | -1.5 | -5.5 | predicted lipoprotein (NCBI) | compare |
| b3609 | secB | -1.5 | -2.8 | export protein SecB (NCBI) | compare |
| b0463 | acrA | -1.5 | -6.9 | multidrug efflux system (NCBI) | compare |
| b3426 | glpD | -1.4 | -2.2 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b3190 | yrbA | -1.4 | -3.6 | orf, hypothetical protein (VIMSS) | compare |
| b0998 | torD | -1.4 | -0.9 | chaperone protein TorD (NCBI) | compare |
| b3742 | mioC | -1.4 | -3.2 | flavodoxin (NCBI) | compare |
| b4685 | yrbN | -1.4 | -2.6 | expressed protein (RefSeq) | compare |
| b1627 | rsxA | -1.4 | -2.5 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2934 | cmtB | -1.4 | -0.8 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b3009 | yghB | -1.4 | -4.5 | conserved inner membrane protein (NCBI) | compare |
| b0406 | tgt | -1.3 | -4.6 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b2248 | yfaX | -1.3 | -1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0738 | tolR | -1.3 | -1.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b2175 | spr | -1.3 | -3.1 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b3443 | yrhA | -1.3 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1548 | nohA | -1.3 | -1.5 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b3191 | yrbB | -1.3 | -4.3 | orf, hypothetical protein (VIMSS) | compare |
| b1926 | fliT | -1.3 | -2.7 | predicted chaperone (NCBI) | compare |
| b4146 | yjeK | -1.3 | -0.9 | predicted lysine aminomutase (NCBI) | compare |
| b4535 | yniD | -1.3 | -1.1 | predicted protein (RefSeq) | compare |
| b3082 | ygjM | -1.3 | -1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3150 | yraP | -1.3 | -5.1 | hypothetical protein (NCBI) | compare |
| b0015 | dnaJ | -1.3 | -4.8 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b1134 | ymfB | -1.3 | -1.3 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b4402 | yjjY | -1.3 | -0.9 | hypothetical protein (NCBI) | compare |
| b0232 | yafN | -1.3 | -0.5 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b2258 | b2258 | -1.2 | -0.9 | putative transport/receptor protein (VIMSS) | compare |
| b0122 | yacC | -1.2 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b0462 | acrB | -1.2 | -7.3 | multidrug efflux system protein (NCBI) | compare |
| b1727 | yniC | -1.2 | -2.6 | predicted hydrolase (NCBI) | compare |
| b1175 | minD | -1.2 | -3.2 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b2894 | xerD | -1.2 | -0.8 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b3195 | yrbF | -1.2 | -5.1 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2569 | lepA | -1.2 | -3.6 | GTP-binding protein LepA (NCBI) | compare |
| b3629 | rfaS | -1.2 | -0.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4144 | yjeI | -1.2 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1861 | ruvA | -1.2 | -1.1 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b1919 | yedO | -1.2 | -3.0 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1007 | b1007 | -1.2 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1370 | insH-5 | -1.2 | -1.6 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b3194 | yrbE | -1.2 | -5.5 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2168 | fruK | -1.2 | -1.1 | 1-phosphofructokinase (NCBI) | compare |
| b2614 | grpE | -1.2 | -1.5 | heat shock protein (NCBI) | compare |
| b3706 | trmE | -1.2 | -3.5 | tRNA modification GTPase (NCBI) | compare |
| b1253 | yciA | -1.1 | -2.8 | predicted hydrolase (NCBI) | compare |
| b0580 | ybdJ | -1.1 | -1.6 | predicted inner membrane protein (NCBI) | compare |
| b4505 | insX | -1.1 | -1.0 | predicted IS protein (RefSeq) | compare |
| b3021 | ygiT | -1.1 | -1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0149 | mrcB | -1.1 | -7.2 | penicillin-binding protein 1b (NCBI) | compare |
| b1693 | aroD | -1.1 | -4.8 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b0565 | ompT | -1.1 | -6.9 | DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) (NCBI) | compare |
| b1248 | b1248 | -1.1 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2768 | ygcP | -1.1 | -2.3 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b0965 | b0965 | -1.1 | -2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3625 | rfaY | -1.1 | -1.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2174 | b2174 | -1.1 | -4.3 | orf, hypothetical protein (VIMSS) | compare |
| b0682 | ybfN | -1.1 | -2.5 | predicted lipoprotein (NCBI) | compare |
| b1176 | minC | -1.1 | -2.5 | septum formation inhibitor (NCBI) | compare |
| b2083 | yegZ | -1.1 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b0161 | degP | -1.0 | -5.3 | serine endoprotease (protease Do), membrane-associated (NCBI) | compare |
| b1361 | ydaW | -1.0 | -0.4 | orf, hypothetical protein (VIMSS) | compare |
| b2204 | napH | -1.0 | -3.1 | quinol dehydrogenase membrane component (NCBI) | compare |
| b4631 | ykgQ | -1.0 | -0.8 | no description | compare |
| b0882 | clpA | -1.0 | -4.8 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b3741 | gidA | -1.0 | -2.0 | glucose-inhibited division protein A (NCBI) | compare |
| b2784 | relA | -1.0 | -5.4 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b4042 | dgkA | -1.0 | -1.3 | diacylglycerol kinase (NCBI) | compare |
| b0696 | kdpC | -1.0 | -2.3 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b2329 | aroC | -1.0 | -2.7 | chorismate synthase (NCBI) | compare |
| b0890 | ftsK | -1.0 | -2.6 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b3838 | tatB | -1.0 | -4.3 | sec-independent translocase (NCBI) | compare |
| b1296 | ycjJ | -1.0 | -2.4 | putative amino acid/amine transport protein (VIMSS) | compare |
| b4451 | ryhB | -1.0 | -1.2 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b3260 | dusB | -1.0 | -4.5 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b3162 | deaD | -1.0 | -3.0 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b4178 | yjeB | -1.0 | -3.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3075 | ebgR | -1.0 | -2.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2749 | ygbE | -1.0 | -2.7 | conserved inner membrane protein (NCBI) | compare |
| b3626 | rfaJ | -1.0 | -2.6 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b2448 | yffQ | -1.0 | -2.0 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b0439 | lon | -1.0 | -3.3 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b1259 | yciG | -1.0 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4701 | sokX | -1.0 | -0.6 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3193 | yrbD | -0.9 | -4.3 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b1148 | ymfM | -0.9 | -2.1 | e14 prophage; predicted protein (NCBI) | compare |
| b2498 | upp | -0.9 | -2.0 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b2050 | wcaI | -0.9 | -2.4 | predicted glycosyl transferase (NCBI) | compare |
| b0677 | nagA | -0.9 | -3.6 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b1074 | flgC | -0.9 | -1.6 | flagellar basal-body rod protein C (NCBI) | compare |
| b4596 | yciZ | -0.9 | -1.4 | hypothetical protein (RefSeq) | compare |
| b2642 | yfjW | -0.9 | -0.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2236 | yfaE | -0.9 | -2.0 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b2939 | yqgB | -0.9 | -1.1 | predicted protein (RefSeq) | compare |
| b1332 | ynaJ | -0.9 | -0.3 | predicted inner membrane protein (NCBI) | compare |
| b2058 | wcaB | -0.9 | -0.7 | predicted acyl transferase (NCBI) | compare |
| b0780 | ybhK | -0.9 | -3.3 | predicted transferase with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b2910 | zapA | -0.9 | -2.9 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b3181 | greA | -0.9 | -2.3 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b4426 | isrA | -0.9 | -1.5 | unknown RNA (NCBI) | compare |
| b4191 | ulaR | -0.9 | -2.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3916 | pfkA | -0.9 | -1.3 | 6-phosphofructokinase (NCBI) | compare |
| b2912 | ygfA | -0.9 | -2.2 | putative ligase (VIMSS) | compare |
| b3243 | aaeR | -0.9 | -2.5 | predicted DNA-binding transcriptional regulator, efflux system (NCBI) | compare |
| b1185 | dsbB | -0.8 | -1.4 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1349 | recT | -0.8 | -2.8 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b1380 | ldhA | -0.8 | -1.3 | D-lactate dehydrogenase (NCBI) | compare |
| b3788 | rffG | -0.8 | -4.8 | dTDP-glucose 4,6-dehydratase (NCBI) | compare |
| b0865 | ybjP | -0.8 | -2.1 | predicted lipoprotein (NCBI) | compare |
| b4477 | dgoA | -0.8 | -3.0 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI) | compare |
| b1632 | rsxE | -0.8 | -3.3 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b2428 | yfeU | -0.8 | -2.7 | N-acetylmuramic acid-6-phosphate etherase (NCBI) | compare |
| b3858 | yihD | -0.8 | -1.5 | hypothetical protein (NCBI) | compare |
| b0051 | ksgA | -0.8 | -2.5 | dimethyladenosine transferase (NCBI) | compare |
| b1920 | fliY | -0.8 | -1.8 | cystine transporter subunit (NCBI) | compare |
| b2666 | yqaE | -0.8 | -2.1 | predicted membrane protein (NCBI) | compare |
| b1628 | rsxB | -0.8 | -1.2 | electron transport complex protein RnfB (NCBI) | compare |
| b1831 | proQ | -0.8 | -1.3 | putative solute/DNA competence effector (NCBI) | compare |
| b2823 | ppdC | -0.8 | -2.5 | hypothetical protein (NCBI) | compare |
| b4373 | rimI | -0.8 | -1.7 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b3146 | yraL | -0.8 | -2.8 | predicted methyltransferase (NCBI) | compare |
| b4567 | yjjZ | -0.8 | -2.2 | hypothetical protein (NCBI) | compare |
| b1506 | yneL | -0.8 | -1.1 | predicted transcriptional regulator (NCBI) | compare |
| b1841 | yobA | -0.8 | -1.2 | hypothetical protein (NCBI) | compare |