Experiment set12IT034 for Pseudomonas putida KT2440

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
PP_5097 -6.6 -13.4 homoserine O-acetyltransferase compare
PP_0422 -6.3 -7.5 Indole-3-glycerol phosphate synthase compare
PP_4364 -5.9 -5.5 putative Anti-sigma F factor antagonist compare
PP_0966 -5.8 -13.5 Histidinol dehydrogenase compare
PP_4678 -5.8 -17.9 Ketol-acid reductoisomerase compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.6 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4680 -5.6 -17.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -5.6 -12.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5014 -5.6 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2334 -5.5 -8.5 2-methylisocitrate lyase compare
PP_5185 -5.5 -6.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3511 -5.5 -11.2 Branched-chain-amino-acid aminotransferase compare
PP_1985 -5.4 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_0691 -5.4 -5.2 Glutamate 5-kinase compare
PP_4909 -5.3 -10.2 phosphoserine phosphatase compare
PP_5015 -5.2 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0787 -5.2 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1988 -5.1 -9.3 3-isopropylmalate dehydrogenase compare
PP_0164 -5.1 -9.7 conserved protein of unknown function compare
PP_3999 -5.0 -7.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5098 -5.0 -10.7 methionine biosynthesis protein MetW compare
PP_2335 -5.0 -10.8 methylcitrate synthase compare
PP_4699 -5.0 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4890 -4.9 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_0290 -4.9 -8.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -4.8 -3.3 tryptophan synthase alpha chain compare
PP_4679 -4.8 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -4.7 -10.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1231 -4.7 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -4.7 -9.8 O-succinylhomoserine sulfhydrylase compare
PP_0421 -4.7 -7.8 Anthranilate phosphoribosyltransferase compare
PP_5128 -4.7 -8.5 Dihydroxy-acid dehydratase compare
PP_4628 -4.7 -5.1 conserved protein of unknown function conserved
PP_2327 -4.7 -7.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -4.6 -17.5 Anthranilate synthase component 1 compare
PP_1088 -4.5 -12.0 Argininosuccinate synthase compare
PP_0965 -4.5 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5095 -4.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_4723 -4.4 -14.1 Carbamoyl-phosphate synthase large chain compare
PP_2370 -4.4 -4.7 conserved protein of unknown function compare
PP_1025 -4.4 -11.4 2-isopropylmalate synthase compare
PP_4799 -4.4 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0289 -4.4 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_2168 -4.3 -12.7 Transaldolase compare
PP_4999 -4.3 -3.0 dihydroorotase-like protein compare
PP_1995 -4.2 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1986 -3.9 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_0184 -3.9 -5.9 Argininosuccinate lyase compare
PP_0083 -3.9 -7.4 tryptophan synthase beta chain compare
PP_2433 -3.8 -4.3 conserved protein of unknown function compare
PP_3821 -3.8 -12.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4724 -3.8 -6.5 Carbamoyl-phosphate synthase small chain compare
PP_4058 -3.8 -14.8 1,4-alpha-glucan branching enzyme compare
PP_0339 -3.8 -6.3 Pyruvate dehydrogenase E1 component compare
PP_5155 -3.8 -6.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -3.7 -3.6 Nitrogen regulation protein NR(I) compare
PP_0888 -3.6 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_2337 -3.5 -2.4 aconitate isomerase compare
PP_3484 -3.5 -6.6 Response regulator receiver protein compare
PP_1079 -3.4 -5.2 Ornithine carbamoyltransferase compare
PP_5289 -3.3 -5.4 Acetylglutamate kinase compare
PP_5347 -3.2 -11.5 pyruvate carboxylase subunit A compare
PP_2333 -3.2 -6.8 GntR family transcriptional regulator conserved
PP_0420 -3.1 -8.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4940 -2.9 -7.6 Putative glycosyltransferase compare
PP_3506 -2.9 -4.5 Magnesium chelatase, subunit ChII compare
PP_4700 -2.8 -2.0 pantothenate synthetase compare
PP_5346 -2.8 -8.9 pyruvate carboxylase subunit B compare
PP_1678 -2.8 -4.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1635 -2.8 -2.5 DNA-binding response regulator compare
PP_1673 -2.7 -7.4 cobyrinate a,c-diamide synthase compare
PP_1676 -2.6 -5.8 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4977 -2.5 -9.6 5,10-methylenetetrahydrofolate reductase compare
PP_1672 -2.5 -6.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4936 -2.5 -6.2 O-antigen polymerase compare
PP_1675 -2.3 -9.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1681 -2.3 -10.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1215 -2.2 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4943 -2.2 -2.4 putative Glycosyl transferase compare
PP_2336 -2.2 -2.1 aconitate hydratase 1 compare
PP_1695 -2.2 -8.7 putative Sodium-solute symporter/sensory box histidine kinase/response regulator conserved
PP_0291 -2.2 -2.8 conserved protein of unknown function compare
PP_4830 -2.2 -4.8 precorrin-6Y C(5,15)-methyltransferase compare
PP_2328 -2.2 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_3507 -2.2 -11.0 Aerobic cobaltochelatase subunit CobN compare
PP_3286 -2.1 -5.6 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4827 -2.1 -8.3 Precorrin-2 C(20)-methyltransferase compare
PP_2375 -2.0 -9.8 cobalamin-dependent methionine synthase compare
PP_0393 -2.0 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5348 -2.0 -7.9 Transcriptional regulator, LysR family compare
PP_5717 -1.9 -3.2 conserved protein of unknown function compare
PP_4826 -1.9 -5.7 Precorrin-3B C17-methyltransferase compare
PP_4829 -1.9 -3.2 putative precorrin-3B synthase compare
PP_0406 -1.9 -4.1 Nucleotidyltransferase family protein compare
PP_4832 -1.9 -3.9 Precorrin-6x reductase compare
PP_1677 -1.9 -6.9 Adenosyl-cobyric acid synthase compare
PP_5230 -1.8 -3.3 Tyrosine recombinase XerC compare
PP_1804 -1.8 -10.5 Glycosyl transferase WbpL compare
PP_1216 -1.8 -2.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1778 -1.7 -4.4 Lipopolysaccharide ABC export system, permease protein compare
PP_4828 -1.7 -1.0 Precorrin-8X methylmutase compare
PP_1233 -1.7 -4.3 sulfurtransferase compare
PP_0833 -1.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_4993 -1.7 -3.3 Glutathione synthetase compare
PP_4938 -1.7 -6.2 putative Glycosyl transferase compare
PP_1493 -1.6 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1800 -1.6 -8.6 Oxidoreductase Rmd compare
PP_0673 -1.6 -3.3 conserved protein of unknown function compare
PP_1799 -1.6 -11.0 GDP-mannose 4,6-dehydratase compare
PP_1994 -1.5 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1528 -1.5 -1.9 conserved protein of unknown function compare
PP_5453 -1.5 -2.8 conserved protein of unknown function compare
PP_1776 -1.5 -11.2 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4782 -1.5 -4.9 Phosphomethylpyrimidine kinase compare
PP_5104 -1.5 -5.9 thiazole synthase compare
PP_5054 -1.5 -1.5 glutaredoxin 3 compare
PP_t12 -1.5 -1.4 tRNA-Thr compare
PP_1217 -1.5 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1802 -1.5 -11.0 glycosyl transferase compare
PP_2217 -1.4 -3.0 enoyl-CoA hydratase compare
PP_0513 -1.4 -2.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4481 -1.4 -6.6 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3508 -1.4 -1.7 Protein CobW compare
PP_4129 -1.4 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4392 -1.4 -6.4 chemotaxis protein methyltransferase compare
PP_0362 -1.4 -9.5 Biotin synthase compare
PP_1779 -1.4 -4.7 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1780 -1.4 -10.8 putative mannosyltransferase compare
PP_5217 -1.3 -9.0 Polyphosphate kinase compare
PP_1355 -1.3 -10.8 Muropeptide permease AmpG compare
PP_3409 -1.3 -2.6 putative Cobalamin biosynthesis protein cobE compare
PP_1801 -1.3 -8.1 Glycosyl transferase WbpY compare
PP_2388 -1.3 -3.6 Transporter, LysE family compare
PP_1805 -1.3 -10.4 Polysaccharide biosynthesis protein compare
PP_4098 -1.3 -2.3 UvrABC system protein C compare
PP_5028 -1.3 -1.9 proline iminopeptidase compare
PP_1829 -1.3 -2.0 Hydrolase, alpha/beta fold family compare
PP_1589 -1.3 -5.9 uridylyltransferase compare
PP_0405 -1.3 -9.9 conserved protein of unknown function compare
PP_2299 -1.3 -1.8 Trigger factor compare
PP_1783 -1.3 -0.8 dTDP-glucose pyrophosphorylase compare
PP_3037 -1.2 -3.3 C4-type zinc finger protein, DksA/TraR family compare
PP_3770 -1.2 -3.6 conserved protein of unknown function compare
PP_4695 -1.2 -5.2 Sensory box histidine kinase compare
PP_4984 -1.2 -6.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4793 -1.2 -2.6 conserved protein of unknown function compare
PP_4880 -1.2 -6.1 exoribonuclease R compare
PP_1764 -1.2 -4.6 Phosphoglycolate phosphatase 2 compare
PP_5035 -1.2 -5.3 Histidine utilization repressor compare
PP_1021 -1.2 -3.3 DNA-binding transcriptional regulator compare
PP_4342 -1.2 -2.3 flagellar synthesis regulator, putative ATPase compare
PP_0434 -1.2 -6.8 Anhydro-N-acetylmuramic acid kinase compare
PP_2088 -1.2 -2.8 RNA polymerase sigma factor SigX compare
PP_4879 -1.2 -2.5 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5303 -1.1 -3.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4338 -1.1 -6.4 Chemotaxis histidine kinase CheA compare
PP_0366 -1.1 -4.1 dethiobiotin synthetase compare
PP_3398 -1.1 -2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_5324 -1.1 -2.5 Response regulator compare
PP_1609 -1.1 -1.9 conserved protein of unknown function compare
PP_1304 -1.1 -6.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1679 -1.1 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1733 -1.1 -1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4902 -1.1 -1.4 Oligoribonuclease compare
PP_1214 -1.1 -2.1 putative transcriptional regulatory protein compare
PP_4726 -1.1 -1.7 Chaperone protein DnaJ compare
PP_0959 -1.1 -1.5 phospholipid ABC transporter compare
PP_1344 -1.1 -1.6 conserved protein of unknown function compare
PP_2899 -1.1 -2.0 conserved exported protein of unknown function compare
PP_0122 -1.1 -2.5 conserved exported protein of unknown function compare
PP_5422 -1.1 -2.1 hypothetical protein compare
PP_0086 -1.1 -2.2 conserved protein of unknown function compare
PP_5294 -1.1 -3.5 Ribonuclease PH compare
PP_2082 -1.0 -5.8 phosphoenolpyruvate synthetase compare
PP_4254 -1.0 -1.8 conserved protein of unknown function compare
PP_2378 -1.0 -1.8 Fe/S biogenesis protein NfuA compare
PP_0855 -1.0 -1.2 conserved protein of unknown function compare
PP_5557 -1.0 -1.5 protein of unknown function compare
PP_0735 -1.0 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_2145 -1.0 -4.0 beta-N-acetylglucosaminidase compare
PP_3637 -1.0 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2414 -1.0 -0.7 conserved exported protein of unknown function compare
PP_0365 -1.0 -5.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3946 -1.0 -1.1 HTH-type transcriptional repressor NicR compare
PP_1186 -1.0 -0.6 two component system DNA-binding transcriptional dual regulator compare
PP_1328 -1.0 -1.9 Protein MraZ compare
PP_1734 -1.0 -1.9 Probable septum site-determining protein MinC compare
PP_2390 -1.0 -3.5 Transcriptional regulator, LysR family compare
PP_1303 -0.9 -4.9 Sulfate adenylyltransferase subunit 2 compare
PP_0435 -0.9 -5.7 Peptidase, M23/M37 family compare
PP_1164 -0.9 -1.2 Transcriptional regulator, LysR family compare
PP_2340 -0.9 -2.1 conserved protein of unknown function compare
PP_4124 -0.9 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_4546 -0.9 -2.3 ATP-dependent helicase HrpA compare
PP_5295 -0.9 -2.1 conserved protein of unknown function compare
PP_1097 -0.9 -1.4 Methionine--tRNA ligase compare
PP_5027 -0.9 -1.4 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4922 -0.9 -6.7 Phosphomethylpyrimidine synthase compare
PP_4120 -0.9 -2.1 NADH-quinone oxidoreductase subunit B compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium propionate in Pseudomonas putida KT2440

For carbon source Sodium propionate across organisms