Experiment set12IT034 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0040 -3.3 -1.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2036 -3.3 -13.2 acetolactate synthase III, large subunit compare
Atu3763 -3.2 -2.2 hypothetical protein compare
Atu2125 -2.7 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu4317 -2.6 -4.9 TetR family transcriptional regulator compare
Atu3707 -2.6 -4.5 phosphoserine aminotransferase compare
Atu3468 -2.5 -1.4 hypothetical protein compare
Atu1588 -2.4 -8.5 homoserine dehydrogenase compare
Atu0894 -2.4 -3.6 ABC transporter, membrane spanning protein compare
Atu3730 -2.4 -1.6 hypothetical protein compare
Atu0769 -2.4 -2.7 protoheme IX farnesyltransferase compare
Atu0086 -2.3 -2.1 ribosome-binding factor A compare
Atu3469 -2.2 -3.5 phosphoglyceromutase compare
Atu3908 -2.2 -12.4 GntR family transcriptional regulator compare
Atu4616 -2.2 -2.8 dTDP-4-dehydrorhamnose reductase compare
Atu2684 -2.1 -1.8 hypothetical protein compare
Atu1417 -2.1 -6.4 enoyl-CoA hydratase compare
Atu0486 -2.0 -5.1 dihydroorotate dehydrogenase compare
Atu1470 -2.0 -1.7 Camphor resistance protein compare
Atu1308 -2.0 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu3706 -2.0 -7.9 D-3-phosphoglycerate dehydrogenase compare
Atu0331 -2.0 -4.1 sigma-54 modulation protein compare
Atu1513 -1.9 -6.2 ABC excinuclease subunit A compare
Atu0399 -1.9 -5.4 dihydroorotase compare
Atu4217 -1.9 -1.9 TetR family transcriptional regulator compare
Atu0298 -1.9 -7.2 orotidine 5 compare
Atu4773 -1.9 -1.9 two component response regulator compare
Atu3755 -1.8 -4.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0031 -1.8 -1.7 PTS system, IIA component compare
Atu0041 -1.7 -2.2 glutamine amidotransferase compare
Atu1129 -1.7 -5.2 excinuclease ABC chain C compare
Atu1844 -1.7 -3.1 Phosphoribosylformylglycinamidine synthetase compare
Atu1030 -1.7 -1.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3750 -1.7 -3.3 thiamine-phosphate pyrophosphorylase compare
Atu3754 -1.7 -7.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2239 -1.6 -3.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0043 -1.6 -2.6 imidazoleglycerol-phosphate dehydratase compare
Atu1535 -1.6 -1.6 cytochrome c oxidase, FixQ chain compare
Atu0142 -1.5 -3.0 cytochrome o ubiquinol oxidase subunit II compare
Atu4166 -1.5 -1.8 UDP-glucose 4-epimerase compare
Atu2040 -1.5 -3.5 phosphoserine phosphatase compare
Atu1688 -1.5 -4.1 indole-3-glycerol-phosphate synthase compare
Atu0537 -1.5 -5.5 histidinol dehydrogenase compare
Atu1619 -1.5 -2.8 protein-export membrane protein SECG compare
Atu0678 -1.5 -3.7 histidyl-tRNA synthetase compare
Atu1750 -1.4 -5.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu2787 -1.4 -1.3 hypothetical protein compare
Atu0679 -1.4 -4.6 ATP phosphoribosyltransferase compare
Atu0141 -1.4 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu0354 -1.4 -1.9 ferric uptake regulator compare
Atu1141 -1.4 -3.7 Phosphoribosylglycinamide synthetase compare
Atu0101 -1.4 -3.1 cytochrome c compare
Atu1845 -1.4 -4.0 phosphoribosylformylglycinamidine synthase I compare
Atu0784 -1.4 -2.9 hypothetical protein compare
Atu1163 -1.3 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0400 -1.3 -3.5 orotate phosphoribosyltransferase compare
Atu3663 -1.3 -1.3 hypothetical protein compare
Atu2207 -1.3 -2.6 two component sensor kinase compare
Atu2728 -1.3 -3.2 beta (1-->2) glucan export ATP-binding protein compare
Atu2057 -1.3 -2.1 DNA helicase II compare
Atu2439 -1.2 -1.2 hypothetical protein compare
Atu0971 -1.2 -3.1 two component sensor kinase compare
Atu1904 -1.2 -1.7 transcriptional regulator compare
Atu0017 -1.2 -3.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4711 -1.2 -4.3 two component sensor kinase compare
Atu1307 -1.2 -4.5 dihydroorotase compare
Atu2640 -1.2 -3.8 hypothetical protein compare
Atu2001 -1.2 -4.7 excinuclease ABC subunit B compare
Atu1205 -1.2 -7.5 threonine dehydratase compare
Atu1570 -1.2 -0.9 hypothetical protein compare
Atu2718 -1.1 -4.4 homoserine O-succinyltransferase compare
Atu0269 -1.1 -3.5 exodeoxyribonuclease VII large subunit compare
Atu1364 -1.1 -4.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4618 -1.1 -6.6 dTDP-rhamnose-3,5-epimerase compare
Atu5430 -1.1 -1.8 hypothetical protein compare
Atu1810 -1.1 -1.1 hypothetical protein compare
Atu1528 -1.1 -7.1 nitrogen fixation protein FixI compare
Atu2052 -1.1 -4.1 hypothetical protein compare
Atu2803 -1.1 -3.3 Cobalamin biosynthesis associated protein compare
Atu4613 -1.1 -8.1 glycosyltransferase compare
Atu2555 -1.1 -2.4 L-lysine 2,3-aminomutase compare
Atu1447 -1.1 -2.5 two component sensor kinase compare
Atu1527 -1.0 -3.6 nitrogen fixation protein FixS compare
Atu1714 -1.0 -1.5 exonuclease III compare
Atu1645 -1.0 -4.8 ABC transporter, substrate binding protein compare
Atu0432 -1.0 -4.0 O-succinylhomoserine sulfhydrylase compare
Atu4617 -1.0 -5.7 dTDP-D-glucose-4,6-dehydratase compare
Atu1182 -1.0 -1.7 hypothetical protein compare
Atu0361 -1.0 -2.8 transcriptional regulator compare
Atu1468 -1.0 -5.3 hypothetical protein compare
Atu0912 -1.0 -1.1 Na+/H+ antiporter compare
Atu8162 -1.0 -1.4 hypothetical protein compare
Atu4614 -1.0 -4.6 glycosyltransferase compare
Atu1127 -1.0 -2.3 molybdopterin converting factor small subunit compare
Atu0149 -1.0 -2.5 enoyl-(acyl-carrier-protein) reductase compare
Atu2616 -1.0 -4.4 hypothetical protein compare
Atu1647 -1.0 -5.7 ABC transporter, membrane spanning protein compare
Atu0640 -1.0 -2.2 hypothetical protein compare
Atu2615 -1.0 -3.5 hypothetical protein compare
Atu0029 -1.0 -3.4 S-adenosylhomocysteine hydrolase compare
Atu0977 -1.0 -2.8 serine protease DO-like protease compare
Atu1039 -1.0 -3.3 DNA repair protein RecO compare
Atu2184 -0.9 -3.8 transcriptional regulator, AsnC family compare
Atu0030 -0.9 -1.3 phosphocarrier protein HPr compare
Atu2824 -0.9 -3.3 hypothetical protein compare
Atu0976 -0.9 -2.4 cycL protein compare
Atu0038 -0.9 -2.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1629 -0.9 -1.1 transcriptional regulator, ArsR family compare
Atu2073 -0.9 -4.4 membrane protein compare
Atu2584 -0.9 -3.2 hypothetical protein compare
Atu1077 -0.9 -2.1 DNA repair protein compare
Atu1705 -0.9 -2.2 SEC-independent protein translocase protein compare
Atu2793 -0.9 -2.8 cobyrinic acid a,c-diamide synthase compare
Atu0893 -0.9 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu2270 -0.9 -1.3 ATP-dependent Clp protease, proteolytic subunit compare
Atu4615 -0.9 -4.8 glucose-1-phosphate thymidylyltransferase compare
Atu3466 -0.9 -2.4 ArsR family transcriptional regulator compare
Atu2831 -0.9 -4.0 glucose inhibited division protein A compare
Atu2692 -0.9 -2.8 intracellular septation protein compare
Atu3311 -0.9 -5.8 phosphomannose isomerase compare
Atu2379 -0.9 -4.4 phosphomannomutase compare
Atu2192 -0.9 -1.1 hypothetical protein compare
Atu1838 -0.9 -2.5 ABC transporter, substrate binding protein (amino acid) compare
Atu2238 -0.9 -4.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3727 -0.8 -2.9 hypothetical protein compare
Atu3885 -0.8 -3.1 inositol monophosphatase compare
Atu3353 -0.8 -5.5 mannose-1-phosphate guanylyltransferase compare
Atu0051 -0.8 -3.1 two component sensor kinase compare
Atu3623 -0.8 -2.8 DnaJ family molecular chaperone compare
Atu1140 -0.8 -2.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0153 -0.8 -3.5 transcriptional regulator, Fur family compare
Atu2264 -0.8 -4.4 2-isopropylmalate synthase compare
Atu0703 -0.8 -1.9 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0062 -0.8 -4.2 transcriptional regulator, ROK family compare
Atu0687 -0.8 -1.8 hypothetical protein compare
Atu1902 -0.8 -2.6 transketolase compare
Atu8138 -0.8 -1.4 hypothetical protein compare
Atu4610 -0.8 -4.7 sugar nucleotide epimerase/dehydratase compare
Atu0434 -0.8 -1.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0050 -0.8 -3.1 two component response regulator compare
Atu0036 -0.8 -1.8 hypothetical protein compare
Atu2729 -0.8 -1.8 hypothetical protein compare
Atu1074 -0.8 -4.4 NAD/NADP dependent oxidoreductase compare
Atu1537 -0.8 -5.3 cytochrome-c oxidase, FixN chain compare
Atu6131 -0.8 -3.1 TraR Antiactivator compare
Atu5125 -0.8 -2.2 GntR family transcriptional regulator compare
Atu3598 -0.8 -1.3 thiol:disulfide interchange protein compare
Atu6020 -0.7 -3.9 conserved hypothetical protein compare
Atu0846 -0.7 -1.9 transcriptional regulator, MarR family compare
Atu1760 -0.7 -0.9 hypothetical protein compare
Atu0205 -0.7 -4.6 methylmalonate-semialdehyde dehydrogenase compare
Atu1075 -0.7 -2.6 amidophosphoribosyltransferase compare
Atu2187 -0.7 -2.5 transcriptional regulator, ArsR family compare
Atu0647 -0.7 -1.9 phosphoribosylamine--glycine ligase compare
Atu5470 -0.7 -2.4 hypothetical protein compare
Atu1980 -0.7 -1.7 hypothetical protein compare
Atu4148 -0.7 -2.9 UDP-glucuronic acid epimerase compare
Atu1254 -0.7 -1.5 transcriptional regulator, ArsR family compare
Atu0346 -0.7 -1.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0973 -0.7 -3.4 cycH protein compare
Atu0749 -0.7 -2.3 biotin synthesis BioY protein compare
Atu2801 -0.7 -2.9 precorrin-2 C20 methyltransferase compare
Atu1646 -0.7 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2267 -0.7 -2.2 hypothetical protein compare
Atu3572 -0.7 -3.8 transcriptional regulator compare
Atu4609 -0.7 -3.9 glycosyltransferase compare
Atu0421 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu2289 -0.7 -4.8 anthranilate synthase component I and II compare
Atu1687 -0.7 -3.5 anthranilate phosphoribosyltransferase compare
Atu1644 -0.7 -1.5 hypothetical protein compare
Atu3739 -0.7 -1.8 phosphoglycerate kinase compare
Atu6019 -0.7 -5.5 D-nopaline dehydrogenase compare
Atu2633 -0.7 -1.3 RhtB family transporter compare
Atu2183 -0.7 -3.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2236 -0.7 -1.5 adenine phosphoribosyltransferase compare
Atu3496 -0.7 -2.5 hypothetical protein compare
Atu1258 -0.7 -2.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu1602 -0.7 -3.3 transcriptional activator, Crp family compare
Atu2578 -0.7 -2.5 cAMP-dependent protein kinase regulatory subunit compare
Atu0099 -0.7 -3.6 prephenate dehydratase compare
Atu4346 -0.6 -3.0 hypothetical protein compare
Atu3632 -0.6 -2.5 hypothetical protein compare
Atu2376 -0.6 -1.8 hypothetical protein compare
Atu1529 -0.6 -3.0 nitrogen fixation protein FixH compare
Atu2554 -0.6 -0.8 lysyl-tRNA synthetase compare
Atu2083 -0.6 -2.2 DNA repair protein RecN compare
Atu1361 -0.6 -2.8 hypothetical protein compare
Atu0499 -0.6 -3.6 hypothetical protein compare
Atu2548 -0.6 -4.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2791 -0.6 -3.4 3-isopropylmalate dehydrogenase compare
Atu3963 -0.6 -3.5 GntR family transcriptional regulator compare
Atu2802 -0.6 -2.8 precorrin-8X methylmutase compare
Atu1419 -0.6 -2.5 transcriptional regulator, GntR family compare
Atu3798 -0.6 -1.8 TetR family transcriptional regulator compare
Atu3485 -0.6 -4.1 short chain dehydrogenase compare
Atu2709 -0.6 -4.8 3-isopropylmalate dehydratase, large subunit compare
Atu2832 -0.6 -2.4 tRNA modification GTPase compare
Atu4374 -0.6 -2.7 hypothetical protein compare
Atu2796 -0.6 -3.1 precorrin-4 C11-methyltransferase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms