Experiment set12IT033 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu1030 -3.5 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0040 -3.3 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3707 -3.2 -4.3 phosphoserine aminotransferase compare
Atu3763 -3.1 -2.1 hypothetical protein compare
Atu0039 -2.9 -2.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu2040 -2.9 -6.7 phosphoserine phosphatase compare
Atu2036 -2.8 -13.0 acetolactate synthase III, large subunit compare
Atu4217 -2.7 -2.2 TetR family transcriptional regulator compare
Atu2057 -2.4 -3.7 DNA helicase II compare
Atu4317 -2.3 -3.0 TetR family transcriptional regulator compare
Atu0043 -2.3 -2.6 imidazoleglycerol-phosphate dehydratase compare
Atu6098 -2.2 -1.4 transcriptional regulator, HTH family compare
Atu0537 -2.2 -6.4 histidinol dehydrogenase compare
Atu1513 -2.1 -5.6 ABC excinuclease subunit A compare
Atu2728 -2.1 -4.3 beta (1-->2) glucan export ATP-binding protein compare
Atu0679 -2.1 -6.4 ATP phosphoribosyltransferase compare
Atu3706 -2.1 -8.3 D-3-phosphoglycerate dehydrogenase compare
Atu0971 -2.1 -3.9 two component sensor kinase compare
Atu2684 -2.0 -1.7 hypothetical protein compare
Atu0678 -2.0 -5.6 histidyl-tRNA synthetase compare
Atu0038 -1.9 -4.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1447 -1.9 -2.0 two component sensor kinase compare
Atu1750 -1.9 -4.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0269 -1.9 -5.7 exodeoxyribonuclease VII large subunit compare
Atu1417 -1.8 -6.2 enoyl-CoA hydratase compare
Atu1588 -1.8 -6.2 homoserine dehydrogenase compare
Atu0086 -1.8 -1.7 ribosome-binding factor A compare
Atu3469 -1.7 -2.6 phosphoglyceromutase compare
Atu1874 -1.7 -3.0 RecA protein compare
Atu2464 -1.7 -2.5 formyltetrahydrofolate deformylase compare
Atu3750 -1.7 -2.9 thiamine-phosphate pyrophosphorylase compare
Atu0331 -1.7 -1.4 sigma-54 modulation protein compare
Atu4616 -1.7 -2.0 dTDP-4-dehydrorhamnose reductase compare
Atu1129 -1.7 -7.2 excinuclease ABC chain C compare
Atu0141 -1.7 -1.6 cytochrome O ubiquinol oxidase subunit I compare
Atu0400 -1.6 -4.3 orotate phosphoribosyltransferase compare
Atu8054 -1.6 -1.2 hypothetical protein compare
Atu0784 -1.6 -4.1 hypothetical protein compare
Atu1470 -1.6 -1.0 Camphor resistance protein compare
Atu2239 -1.6 -3.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0050 -1.6 -3.3 two component response regulator compare
Atu1644 -1.6 -3.9 hypothetical protein compare
Atu4897 -1.6 -1.6 hypothetical protein compare
Atu1570 -1.5 -1.0 hypothetical protein compare
Atu0399 -1.5 -4.6 dihydroorotase compare
Atu1364 -1.5 -4.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0895 -1.4 -3.3 ABC transporter, substrate binding protein compare
Atu0031 -1.4 -1.4 PTS system, IIA component compare
Atu2237 -1.4 -5.3 cytochrome c1 compare
Atu3908 -1.4 -7.8 GntR family transcriptional regulator compare
Atu0142 -1.4 -1.8 cytochrome o ubiquinol oxidase subunit II compare
Atu2439 -1.4 -1.3 hypothetical protein compare
Atu1845 -1.4 -3.7 phosphoribosylformylglycinamidine synthase I compare
Atu1810 -1.4 -1.2 hypothetical protein compare
Atu3885 -1.4 -4.5 inositol monophosphatase compare
Atu0030 -1.4 -1.5 phosphocarrier protein HPr compare
Atu0876 -1.4 -1.5 superoxide dismutase compare
Atu4187 -1.4 -1.3 tRNA-Met compare
Atu0354 -1.3 -1.9 ferric uptake regulator compare
Atu2073 -1.3 -4.2 membrane protein compare
Atu0298 -1.3 -4.5 orotidine 5 compare
Atu1535 -1.3 -2.2 cytochrome c oxidase, FixQ chain compare
Atu1149 -1.3 -1.5 adenylate cyclase compare
Atu3754 -1.3 -5.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1075 -1.3 -4.5 amidophosphoribosyltransferase compare
Atu0486 -1.3 -4.3 dihydroorotate dehydrogenase compare
Atu1308 -1.3 -4.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0912 -1.2 -1.2 Na+/H+ antiporter compare
Atu1141 -1.2 -4.5 Phosphoribosylglycinamide synthetase compare
Atu1645 -1.2 -6.8 ABC transporter, substrate binding protein compare
Atu1619 -1.2 -2.5 protein-export membrane protein SECG compare
Atu0036 -1.2 -2.1 hypothetical protein compare
Atu2832 -1.2 -3.0 tRNA modification GTPase compare
Atu0361 -1.2 -2.2 transcriptional regulator compare
Atu3712 -1.2 -1.3 hypothetical protein compare
Atu1647 -1.2 -6.0 ABC transporter, membrane spanning protein compare
Atu2125 -1.1 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu4148 -1.1 -3.7 UDP-glucuronic acid epimerase compare
Atu2083 -1.1 -2.6 DNA repair protein RecN compare
Atu1140 -1.1 -3.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2555 -1.1 -2.0 L-lysine 2,3-aminomutase compare
Atu3121 -1.1 -1.2 cold shock protein compare
Atu8012 -1.1 -1.7 hypothetical protein compare
Atu4223 -1.1 -1.7 sarcosine oxidase delta subunit compare
Atu1163 -1.1 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1844 -1.1 -1.3 Phosphoribosylformylglycinamidine synthetase compare
Atu3744 -1.0 -5.3 ABC transporter permease compare
Atu4882 -1.0 -1.2 hypothetical protein compare
Atu0419 -1.0 -1.1 two component sensor kinase compare
Atu1503 -1.0 -1.0 hypothetical protein compare
Atu0723 -1.0 -1.5 FAD dependent oxidoreductase compare
Atu8138 -1.0 -1.4 hypothetical protein compare
Atu2640 -1.0 -3.4 hypothetical protein compare
Atu1028 -1.0 -1.9 hypothetical protein compare
Atu3727 -1.0 -2.6 hypothetical protein compare
Atu2044 -1.0 -3.3 HFLC protein compare
Atu0051 -1.0 -3.4 two component sensor kinase compare
Atu2001 -1.0 -3.9 excinuclease ABC subunit B compare
Atu1439 -0.9 -1.7 hypothetical protein compare
Atu0647 -0.9 -3.6 phosphoribosylamine--glycine ligase compare
Atu3353 -0.9 -4.8 mannose-1-phosphate guanylyltransferase compare
Atu1646 -0.9 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu2183 -0.9 -4.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4618 -0.9 -5.7 dTDP-rhamnose-3,5-epimerase compare
Atu0153 -0.9 -2.4 transcriptional regulator, Fur family compare
Atu2616 -0.9 -4.1 hypothetical protein compare
Atu0769 -0.9 -1.2 protoheme IX farnesyltransferase compare
Atu1853 -0.9 -1.5 hypothetical protein compare
Atu0923 -0.9 -2.5 hypothetical protein compare
Atu2052 -0.9 -2.6 hypothetical protein compare
Atu4610 -0.9 -5.0 sugar nucleotide epimerase/dehydratase compare
Atu1099 -0.9 -3.8 hypothetical protein compare
Atu0225 -0.9 -0.7 hypothetical protein compare
Atu0763 -0.9 -3.1 hydrolase compare
Atu1307 -0.8 -2.3 dihydroorotase compare
Atu4686 -0.8 -1.5 hypothetical protein compare
Atu1902 -0.8 -3.6 transketolase compare
Atu0894 -0.8 -1.0 ABC transporter, membrane spanning protein compare
Atu6021 -0.8 -5.5 D-nopaline dehydrogenase compare
Atu0041 -0.8 -1.4 glutamine amidotransferase compare
Atu1258 -0.8 -3.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu4617 -0.8 -4.2 dTDP-D-glucose-4,6-dehydratase compare
Atu1205 -0.8 -5.5 threonine dehydratase compare
Atu3392 -0.8 -2.2 methyltransferase compare
Atu1468 -0.8 -3.5 hypothetical protein compare
Atu0434 -0.8 -1.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1606 -0.8 -2.9 methionine aminopeptidase compare
Atu1705 -0.8 -2.1 SEC-independent protein translocase protein compare
Atu1446 -0.8 -1.3 two component response regulator compare
Atu1528 -0.8 -5.2 nitrogen fixation protein FixI compare
Atu1204 -0.8 -2.5 potassium uptake protein compare
Atu2238 -0.8 -2.6 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3755 -0.8 -2.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2217 -0.8 -2.1 hypothetical protein compare
Atu0976 -0.8 -1.5 cycL protein compare
Atu4711 -0.8 -2.7 two component sensor kinase compare
Atu4615 -0.8 -3.8 glucose-1-phosphate thymidylyltransferase compare
Atu1803 -0.7 -3.6 cold shock protein compare
Atu4346 -0.7 -3.0 hypothetical protein compare
Atu4166 -0.7 -1.3 UDP-glucose 4-epimerase compare
Atu2718 -0.7 -3.6 homoserine O-succinyltransferase compare
Atu1683 -0.7 -0.8 hypothetical protein compare
Atu6019 -0.7 -5.5 D-nopaline dehydrogenase compare
Atu2801 -0.7 -2.1 precorrin-2 C20 methyltransferase compare
Atu8191 -0.7 -1.1 hypothetical protein compare
Atu1573 -0.7 -0.9 hypothetical protein compare
Atu2807 -0.7 -2.6 cob(I)alamin adenosyltransferase compare
Atu1534 -0.7 -3.8 cytochrome-c oxidase, FixP chain compare
Atu4588 -0.7 -2.6 sodium bile acid symporter family protein compare
Atu0977 -0.7 -1.7 serine protease DO-like protease compare
Atu5088 -0.7 -1.9 hypothetical protein compare
Atu1359 -0.7 -0.7 dnaK deletion suppressor protein compare
Atu2800 -0.7 -2.4 precorrin-3B C17-methyltransferase compare
Atu3730 -0.7 -0.8 hypothetical protein compare
Atu0421 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu1836 -0.7 -1.0 hypothetical protein compare
Atu1530 -0.7 -4.9 nitrogen fixation protein FixG compare
Atu4613 -0.7 -4.2 glycosyltransferase compare
Atu3798 -0.7 -2.1 TetR family transcriptional regulator compare
Atu2694 -0.7 -1.6 hypothetical protein compare
Atu3249 -0.7 -3.4 septum formation inhibitor compare
Atu1354 -0.7 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu5125 -0.7 -2.9 GntR family transcriptional regulator compare
Atu2615 -0.7 -2.4 hypothetical protein compare
Atu0488 -0.7 -0.8 hypothetical protein compare
Atu1602 -0.7 -4.1 transcriptional activator, Crp family compare
Atu0149 -0.7 -2.0 enoyl-(acyl-carrier-protein) reductase compare
Atu0188 -0.7 -1.1 ABC transporter, membrane spanning protein (peptide) compare
Atu4075 -0.7 -2.8 glycogen synthase compare
Atu1779 -0.7 -1.3 hypothetical protein compare
Atu0780 -0.7 -4.1 hypothetical protein compare
Atu1110 -0.7 -1.7 cytosol aminopeptidase compare
Atu2274 -0.7 -3.3 cation efflux system protein compare
Atu8151 -0.7 -1.2 hypothetical protein compare
Atu0812 -0.7 -1.6 hypothetical protein compare
Atu3011 -0.7 -1.2 ArsR family transcriptional regulator compare
Atu5470 -0.6 -1.1 hypothetical protein compare
Atu0029 -0.6 -2.3 S-adenosylhomocysteine hydrolase compare
Atu1021 -0.6 -1.1 outer membrane protein compare
Atu2522 -0.6 -4.2 agrobacterium chromosomal virulence protein B compare
Atu1529 -0.6 -2.3 nitrogen fixation protein FixH compare
Atu1074 -0.6 -3.5 NAD/NADP dependent oxidoreductase compare
Atu0598 -0.6 -2.4 phosphogluconate dehydratase compare
Atu3429 -0.6 -0.8 hypothetical protein compare
Atu5160 -0.6 -2.0 transcriptional regulator protein compare
Atu6179 -0.6 -2.8 virA/G regulated protein compare
Atu8088 -0.6 -0.6 hypothetical protein compare
Atu0703 -0.6 -1.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0845 -0.6 -2.1 hypothetical protein compare
Atu4200 -0.6 -1.7 hypothetical protein compare
Atu2166 -0.6 -1.7 hypothetical protein compare
Atu8144 -0.6 -1.6 hypothetical protein compare
Atu0017 -0.6 -1.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu5010 -0.6 -2.0 hypothetical protein compare
Atu0099 -0.6 -2.6 prephenate dehydratase compare
Atu2484 -0.6 -1.0 hypothetical protein compare
Atu2067 -0.6 -0.6 hypothetical protein compare
Atu1173 -0.6 -3.8 MFS permease compare
Atu4609 -0.6 -4.2 glycosyltransferase compare
Atu0953 -0.6 -0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms