Experiment set12IT033 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most detrimental genes:

  gene name fitness t score description  
Atu8177 +1.1 6.1 hypothetical protein compare
Atu1225 +1.1 1.7 hypothetical protein compare
Atu2349 +1.1 3.1 hypothetical protein compare
Atu0413 +1.0 1.0 stress induced protein compare
Atu4469 +1.0 1.9 iron ABC transporter permease compare
Atu0107 +0.9 1.8 hypothetical protein compare
Atu6166 +0.9 8.3 two component sensor kinase compare
Atu2348 +0.9 5.6 sugar binding protein compare
Atu6178 +0.8 6.7 two component response regulator compare
Atu1639 +0.8 1.6 hypothetical protein compare
Atu2204 +0.8 2.0 hypothetical protein compare
Atu2017 +0.8 1.1 hypothetical protein compare
Atu2634 +0.8 1.0 hypothetical protein compare
Atu0640 +0.8 2.0 hypothetical protein compare
Atu1801 +0.8 2.2 hypothetical protein compare
Atu0739 +0.8 2.4 hypothetical protein compare
Atu1189 +0.7 1.2 hypothetical protein compare
Atu3009 +0.7 1.1 exopolysaccharide production protein compare
Atu2617 +0.7 2.3 chemotaxis protein compare
Atu2675 +0.7 1.8 hypothetical protein compare
Atu4677 +0.7 1.1 hypothetical protein compare
Atu8032 +0.7 2.2 hypothetical protein compare
Atu1232 +0.7 2.1 hypothetical protein compare
Atu1952 +0.7 1.1 hypothetical protein compare
Atu1185 +0.7 1.8 hypothetical protein compare
Atu0508 +0.7 1.7 PH Adaption potassium efflux system compare
Atu3467 +0.7 1.8 hypothetical protein compare
Atu8034 +0.7 1.8 hypothetical protein compare
Atu0836 +0.7 1.7 Glutathione-S-transferase compare
Atu0677 +0.6 2.0 hypothetical protein compare
Atu4237 +0.6 2.6 hypothetical protein compare
Atu2293 +0.6 1.3 hypothetical protein compare
Atu0941 +0.6 0.8 hypothetical protein compare
Atu1475 +0.6 1.4 hypothetical protein compare
Atu5163 +0.6 2.1 type IV secretion protein AvhB2 compare
Atu0460 +0.6 2.6 hypothetical protein compare
Atu1725 +0.6 1.8 hypothetical protein compare
Atu1754 +0.6 1.4 hypothetical protein compare
Atu1399 +0.6 1.5 ABC transporter, substrate binding protein (amino acid) compare
Atu1549 +0.6 2.4 hypothetical protein compare
Atu2733 +0.6 2.4 hypothetical protein compare
Atu0809 +0.6 1.1 hypothetical protein compare
Atu3268 +0.6 2.1 dipeptide ABC transporter permease compare
Atu1744 +0.6 2.6 nitroreductase family protein compare
Atu0924 +0.6 1.7 hypothetical protein compare
Atu1397 +0.6 3.1 ABC transporter, membrane spanning protein (amino acid) compare
Atu0206 +0.6 1.1 hypothetical protein compare
Atu2201 +0.5 1.2 hydrolase compare
Atu1724 +0.5 2.4 hypothetical protein compare
Atu2225 +0.5 2.9 transcriptional regulator compare
Atu0997 +0.5 2.6 hypothetical protein compare
Atu1333 +0.5 1.9 outer membrane protein compare
Atu1916 +0.5 1.5 hypothetical protein compare
Atu1219 +0.5 0.8 hypothetical protein compare
Atu0859 +0.5 1.6 hypothetical protein compare
Atu2729 +0.5 1.1 hypothetical protein compare
Atu0135 +0.5 0.8 uracil phosphoribosyltransferase compare
Atu0854 +0.5 1.7 hypothetical protein compare
Atu1062 +0.5 1.2 phosphatidylserine synthase compare
Atu3578 +0.5 2.7 glycerol-3-phosphate dehydrogenase compare
Atu2682 +0.5 1.4 hypothetical protein compare
Atu2421 +0.5 1.5 chitooligosaccharide deacetylase compare
Atu1516 +0.5 1.8 hypothetical protein compare
Atu1888 +0.5 3.6 two component sensor kinase compare
Atu4896 +0.5 1.1 acetyltransferase compare
Atu8162 +0.5 0.6 hypothetical protein compare
Atu3604 +0.5 0.8 hypoxanthine phosphoribosyltransferase compare
Atu2297 +0.5 2.9 glycosyltransferase compare
Atu2234 +0.5 1.0 hypothetical protein compare
Atu0496 +0.5 1.3 hypothetical protein compare
Atu3122 +0.5 1.7 cold shock protein compare
Atu0746 +0.5 1.5 hypothetical protein compare
Atu4820 +0.5 3.0 hypothetical protein compare
Atu0681 +0.5 1.7 hypothetical protein compare
Atu2343 +0.5 2.1 acetyltransferase compare
Atu4630 +0.5 1.2 hypothetical protein compare
Atu0934 +0.5 2.0 hypothetical protein compare
Atu2672 +0.5 2.5 hypothetical protein compare
Atu3159 +0.5 1.9 3-hydroxyisobutyrate dehydrogenase compare
Atu1701 +0.5 1.3 protein-L-isoaspartate O-methyltransferase compare
Atu0966 +0.5 1.5 hypothetical protein compare
Atu3813 +0.5 1.7 3-oxoacyl-ACP reductase compare
Atu6164 +0.5 3.2 trans-zeatin secretion protein compare
Atu3330 +0.4 2.2 methyl-accepting chemotaxis protein compare
Atu3001 +0.4 1.0 hypothetical protein compare
Atu4626 +0.4 2.6 oligopeptide ABC transporter substrate-binding protein compare
Atu0861 +0.4 1.3 hypothetical protein compare
Atu1481 +0.4 1.7 hypothetical protein compare
Atu5512 +0.4 1.3 hypothetical protein compare
Atu2532 +0.4 1.2 transcriptional regulator, MarR family compare
Atu0295 +0.4 1.2 hypothetical protein compare
Atu4280 +0.4 2.2 short-chain dehydrogenase compare
Atu1831 +0.4 2.6 hypothetical protein compare
Atu2746 +0.4 1.0 hypothetical protein compare
Atu0795 +0.4 1.4 hypothetical protein compare
Atu1690 +0.4 1.8 molybdopterin biosynthesis protein compare
Atu1437 +0.4 2.0 hypothetical protein compare
Atu8087 +0.4 0.5 putative peptidoglycan binding protein compare
Atu0471 +0.4 1.2 hypothetical protein compare
Atu4724 +0.4 1.2 hypothetical protein compare
Atu1667 +0.4 0.9 hypothetical protein compare
Atu1666 +0.4 2.1 hypothetical protein compare
Atu0377 +0.4 1.5 hypothetical protein compare
Atu5115 +0.4 0.7 hypothetical protein compare
Atu1741 +0.4 2.0 hypothetical protein compare
Atu6112 +0.4 2.5 conserved hypothetical protein compare
Atu0246 +0.4 2.1 acetyltransferase compare
Atu3775 +0.4 0.7 hypothetical protein compare
Atu0553 +0.4 1.5 flagellar hook-basal body complex protein compare
Atu2187 +0.4 0.8 transcriptional regulator, ArsR family compare
Atu8096 +0.4 0.9 hypothetical protein compare
Atu3610 +0.4 2.4 transporter compare
Atu0899 +0.4 2.4 dihydrodipicolinate synthase compare
Atu1252 +0.4 1.3 hypothetical protein compare
Atu0132 +0.4 2.3 2-deoxyribose-5-phosphate aldolase compare
Atu0744 +0.4 1.7 hypothetical protein compare
Atu0749 +0.4 1.2 biotin synthesis BioY protein compare
Atu0162 +0.4 1.0 biopolymer transport protein compare
Atu3130 +0.4 2.2 sugar ABC transporter substrate-binding protein compare
Atu3468 +0.4 0.4 hypothetical protein compare
Atu1919 +0.4 1.9 hypothetical protein compare
Atu0267 +0.4 1.5 hypothetical protein compare
Atu3456 +0.4 2.1 ABC transporter permease compare
Atu5142 +0.4 0.8 hypothetical protein compare
Atu4675 +0.4 1.8 dihydrodipicolinate synthase compare
Atu3117 +0.4 2.5 hypothetical protein compare
Atu2677 +0.4 0.9 protein tyrosine phosphatase compare
Atu8184 +0.4 1.7 hypothetical protein compare
Atu4844 +0.4 2.5 sugar ABC transporter permease compare
Atu1221 +0.4 2.0 hypothetical protein compare
Atu2725 +0.4 2.3 transcriptional regulator, DeoR family compare
Atu5046 +0.4 2.0 hypothetical protein compare
Atu1897 +0.4 1.4 short chain dehydrogenase compare
Atu4838 +0.4 1.1 outer membrane lipoprotein compare
Atu2458 +0.4 1.6 ABC transporter, nucleotide binding/ATPase protein (hemin) compare
Atu4821 +0.4 2.4 3-oxoacyl-ACP reductase compare
Atu4852 +0.4 1.4 hypothetical protein compare
Atu3064 +0.4 2.0 ABC transporter permease compare
Atu1967 +0.4 1.8 hypothetical protein compare
Atu3475 +0.4 1.4 acetyl-CoA C-acetyltransferase compare
Atu4524 +0.4 1.8 oligopeptide ABC transporter permease compare
Atu2432 +0.4 1.1 hypothetical protein compare
Atu2770 +0.4 1.7 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu4405 +0.4 1.1 periplasmic nitrate reductase NapE compare
Atu3699 +0.4 1.2 hypothetical protein compare
Atu3497 +0.4 0.8 hypothetical protein compare
Atu1018 +0.4 1.4 hypothetical protein compare
Atu4486 +0.4 1.6 nitroreductase compare
Atu0224 +0.4 1.9 components of type IV pilus, pilin subunit compare
Atu8083 +0.4 2.3 hypothetical protein compare
Atu3521 +0.4 1.3 permease compare
Atu8203 +0.4 1.9 hypothetical protein compare
Atu4297 +0.4 1.8 AraC family transcriptional regulator compare
Atu4272 +0.4 2.2 acetyl-CoA carboxylase biotin carboxyl carrier protein compare
Atu0748 +0.4 2.0 deacetylase compare
Atu4528 +0.4 1.3 hypothetical protein compare
Atu0904 +0.4 1.3 hypothetical protein compare
Atu8122 +0.4 1.9 hypothetical protein compare
Atu1614 +0.4 1.9 phosphoglycolate phosphatase compare
Atu1215 +0.4 2.2 thiosulfate sulfurtransferase compare
Atu2005 +0.4 2.1 hypothetical protein compare
Atu1987 +0.4 1.7 two component response regulator compare
Atu0551 +0.4 0.9 flagellar protein FLGA precursor compare
Atu1401 +0.4 2.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu4487 +0.4 1.9 ABC transporter permease compare
Atu1321 +0.4 1.4 hypothetical protein compare
Atu1113 +0.4 1.4 dehydrogenase compare
Atu3047 +0.4 1.5 oligopeptide ABC transporter permease compare
Atu2456 +0.4 1.0 lactoylglutathione lyase compare
Atu6174 +0.4 2.7 component of type IV secretion system compare
Atu2491 +0.4 0.6 hypothetical protein compare
Atu2740 +0.4 1.1 transcriptional regulator, GntR family compare
Atu1735 +0.4 1.8 hypothetical protein compare
Atu8112 +0.4 1.6 hypothetical protein compare
Atu3324 +0.4 1.1 hypothetical protein compare
Atu1626 +0.4 1.8 NAD dependent epimerase/dehydratase family protein compare
Atu2294 +0.4 2.0 aminoglycoside N6'-acetyltransferase compare
Atu2470 +0.3 1.1 hypothetical protein compare
Atu2531 +0.3 1.2 actinorhodin polyketide dimerase compare
Atu2395 +0.3 1.4 metal dependent hydrolase compare
Atu0986 +0.3 0.6 hypothetical protein compare
Atu0528 +0.3 1.0 large conductance mechanosensitive channel protein compare
Atu0239 +0.3 2.4 transcriptional regulator, AraC family compare
Atu1886 +0.3 1.3 hypothetical protein compare
Atu2078 +0.3 1.6 transcriptional regulator, LysR family compare
Atu8126 +0.3 1.6 putative phage tail protein I compare
Atu3808 +0.3 1.3 LysR family transcriptional regulator compare
Atu2369 +0.3 2.2 Hypothetical Protein compare
Atu5485 +0.3 1.0 hypothetical protein compare
Atu4423 +0.3 1.7 ABC transporter permease compare
Atu2322 +0.3 1.9 hypothetical protein compare
Atu1730 +0.3 1.3 hypothetical protein compare
Atu8094 +0.3 1.2 hypothetical protein compare
Atu1223 +0.3 0.6 hypothetical protein compare
Atu0156 +0.3 1.1 hypothetical protein compare
Atu0742 +0.3 1.8 hypothetical protein compare
Atu2426 +0.3 2.3 ABC transporter, membrane spanning protein (branched chain amino acid) compare
Atu2316 +0.3 1.2 hypothetical protein compare
Atu1056 +0.3 1.5 hypothetical protein compare
Atu6167 +0.3 2.7 component of type IV secretion system compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms