Experiment set12IT032 for Pseudomonas putida KT2440

Compare to:

1,2-Propanediol carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_0232 +1.1 2.6 ATP-binding taurine transporter subunit compare
PP_1650 +1.1 9.7 Sensor protein GacS compare
PP_0846 +1.1 1.9 DnaK-like molecular chaperone specific for IscU compare
PP_4373 +1.1 8.6 Transcriptional regulator FleQ compare
PP_4099 +1.1 9.9 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4171 +1.0 9.4 conserved exported protein of unknown function compare
PP_2884 +0.9 6.5 XRE family transcriptional regulator compare
PP_4268 +0.8 1.6 nucleoid-associated broad specificity regulator compare
PP_0803 +0.8 6.2 Protein secretion ABC efflux system, membrane fusion protein compare
PP_t29 +0.8 1.8 tRNA-Ala compare
PP_5528 +0.8 1.5 conserved protein of unknown function compare
PP_2793 +0.8 3.0 Acyl-CoA dehydrogenase family protein compare
PP_0804 +0.8 6.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4215 +0.8 3.8 pyoverdine biosynthesis related protein compare
PP_4214 +0.7 2.7 pyoverdine biosynthesis related protein compare
PP_5053 +0.7 3.5 Protein-export protein SecB compare
PP_0805 +0.7 6.0 Outer membrane efflux protein compare
PP_0806 +0.7 6.9 putative Surface adhesion protein compare
PP_1774 +0.7 2.3 conserved exported protein of unknown function compare
PP_0440 +0.7 2.2 Elongation factor Tu-A compare
PP_1113 +0.7 5.5 Pyridoxal-phosphate dependent enzyme family protein compare
PP_3876 +0.7 2.6 conserved protein of unknown function compare
PP_5090 +0.6 1.4 putative cell division protein compare
PP_2878 +0.6 2.3 conserved protein of unknown function compare
PP_1225 +0.6 2.2 7-carboxy-7-deazaguanine synthase compare
PP_3938 +0.6 2.0 conserved protein of unknown function compare
PP_4018 +0.6 2.2 Acetyltransferase, GNAT family compare
PP_2127 +0.6 3.3 Sensor histidine kinase compare
PP_5007 +0.6 1.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5248 +0.6 1.5 putative hydrolase compare
PP_5243 +0.5 3.1 putative hydrolase compare
PP_3748 +0.5 2.2 conserved hypothetical protein compare
PP_4593 +0.5 1.2 conserved protein of unknown function compare
PP_5331 +0.5 2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_2677 +0.5 1.4 conserved exported protein of unknown function compare
PP_2309 +0.5 1.3 conserved protein of unknown function compare
PP_1808 +0.5 1.3 glucose-6-phosphate isomerase compare
PP_3541 +0.5 1.5 Transporter, MgtC family compare
PP_0945 +0.5 1.3 conserved protein of unknown function compare
PP_5705 +0.5 1.4 protein of unknown function compare
PP_4817 +0.5 2.6 MaoC domain protein compare
PP_4835 +0.5 2.1 conserved exported protein of unknown function compare
PP_5423 +0.5 1.9 conserved membrane protein of unknown function compare
PP_1328 +0.5 1.7 Protein MraZ compare
PP_4109 +0.5 2.1 conserved protein of unknown function compare
PP_1521 +0.5 1.9 conserved protein of unknown function compare
PP_3234 +0.5 2.0 Heat shock protein, HSP20 family compare
PP_0355 +0.5 1.6 Response regulator compare
PP_4616 +0.5 1.7 conserved protein of unknown function compare
PP_1548 +0.5 1.3 conserved protein of unknown function compare
PP_5225 +0.5 0.9 frataxin compare
PP_5441 +0.5 2.0 protein of unknown function compare
PP_3407 +0.5 1.1 conserved protein of unknown function compare
PP_1451 +0.5 3.0 conserved exported protein of unknown function compare
PP_2446 +0.5 1.7 conserved exported protein of unknown function compare
PP_3757 +0.5 2.1 Chemotaxis protein CheY compare
PP_0534 +0.5 2.2 putative Transcriptional regulator PfeR compare
PP_2060 +0.5 1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2413 +0.4 3.6 GGDEF family protein compare
PP_5283 +0.4 3.0 periplasmic dipeptide transport protein compare
PP_4172 +0.4 2.7 conserved exported protein of unknown function compare
PP_5223 +0.4 1.6 regulator of nucleotide diphosphokinase compare
PP_2341 +0.4 1.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2318 +0.4 2.3 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_5232 +0.4 1.2 conserved protein of unknown function compare
PP_2222 +0.4 1.8 conserved protein of unknown function compare
PP_2426 +0.4 2.0 coniferyl alcohol dehydrogenase compare
PP_3100 +0.4 2.7 conserved protein of unknown function compare
PP_0750 +0.4 2.0 conserved protein of unknown function compare
PP_0585 +0.4 1.6 putative metal-sensitive transcriptional regulator, MerR family compare
PP_0629 +0.4 1.6 conserved membrane protein of unknown function compare
PP_5696 +0.4 2.3 conserved protein of unknown function compare
PP_4424 +0.4 1.5 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5073 +0.4 1.6 conserved exported protein of unknown function compare
PP_3831 +0.4 2.2 conserved protein of unknown function compare
PP_1623 +0.4 3.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_2439 +0.4 1.3 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_2055 +0.4 1.8 putative isomerase compare
PP_3761 +0.4 3.4 Sensor histidine kinase/response regulator compare
PP_t11 +0.4 1.6 tRNA-Lys compare
PP_3930 +0.4 1.8 conserved exported protein of unknown function compare
PP_4173 +0.4 2.9 Sensor histidine kinase/response regulator compare
PP_4342 +0.4 1.1 flagellar synthesis regulator, putative ATPase compare
PP_3707 +0.4 1.8 conserved protein of unknown function compare
PP_2970 +0.4 1.3 conserved exported protein of unknown function compare
PP_4452 +0.4 2.0 NAD/NADP octopine/nopaline dehydrogenase family protein compare
PP_3003 +0.4 1.2 3-dehydroquinate dehydratase 3, type II compare
PP_5469 +0.4 1.5 putative SAM-dependent methyltransferase compare
PP_2083 +0.4 2.0 putative Lipase compare
PP_0772 +0.4 1.5 Metallo-beta-lactamase family protein compare
PP_2857 +0.4 1.6 conserved exported protein of unknown function compare
PP_1208 +0.4 0.7 conserved protein of unknown function, SlyX family compare
PP_5497 +0.4 2.7 conserved protein of unknown function with rhs repeat-associated core domain compare
PP_2231 +0.4 1.7 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_3989 +0.4 1.4 DNA-cytosine methyltransferase compare
PP_5610 +0.4 0.9 protein of unknown function compare
PP_0919 +0.4 1.5 conserved protein of unknown function compare
PP_2568 +0.4 0.7 Ring-cleaving dioxygenase compare
PP_2756 +0.4 1.6 conserved protein of unknown function compare
PP_1307 +0.4 2.0 AsnC family transcriptional regulator compare
PP_1362 +0.4 1.6 pyruvate kinase II compare
PP_2745 +0.4 1.9 Universal stress protein family compare
PP_4846 +0.4 1.7 L-amino acid N-acyltransferase compare
PP_0775 +0.4 0.8 conserved protein of unknown function compare
PP_4045 +0.4 0.9 conserved protein of unknown function compare
PP_2631 +0.4 0.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0357 +0.4 1.8 ACT domain protein compare
PP_4383 +0.4 2.1 Flagellar P-ring protein compare
PP_5669 +0.4 1.8 ABC transporter related compare
PP_2514 +0.3 1.7 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_4070 +0.3 1.7 conserved protein of unknown function compare
PP_3947 +0.3 1.9 nicotinate dehydrogenase subunit A compare
PP_0563 +0.3 2.6 Response regulator compare
PP_1041 +0.3 0.9 twin arginine protein export complex subunit compare
PP_2958 +0.3 1.5 Glutaredoxin compare
PP_0566 +0.3 0.6 translation-related factor compare
PP_3884 +0.3 1.9 Phage holin, lambda family compare
PP_0556 +0.3 1.6 Acetoin catabolism protein compare
PP_2406 +0.3 1.8 putative quinate/shikimate dehydrogenase compare
PP_3899 +0.3 1.3 conserved protein of unknown function, hicB family compare
PP_2337 +0.3 0.9 aconitate isomerase compare
PP_3392 +0.3 1.0 conserved protein of unknown function compare
PP_2504 +0.3 1.6 putative tautomerase K2 compare
PP_3085 +0.3 1.3 putative Transmembrane sensor compare
PP_2858 +0.3 0.9 conserved exported protein of unknown function compare
PP_4419 +0.3 0.8 transposase compare
PP_3469 +0.3 1.9 conserved protein of unknown function compare
PP_2999 +0.3 0.8 Glyoxalase family protein compare
PP_3199 +0.3 2.3 putative Monooxygenase compare
PP_4808 +0.3 0.5 23S rRNA m3psi1915 methyltransferase compare
PP_0630 +0.3 0.6 DNA gyrase inhibitor YacG compare
PP_3110 +0.3 0.9 protein of unknown function compare
PP_0409 +0.3 2.5 Sensory box histidine kinase compare
PP_2616 +0.3 1.7 conserved protein of unknown function compare
PP_3967 +0.3 1.3 MutT/nudix family protein compare
PP_0123 +0.3 2.0 DNA polymerase I, 5 compare
PP_2615 +0.3 1.0 hemolysin-coregulated protein compare
PP_2722 +0.3 1.8 conserved protein of unknown function compare
PP_0574 +0.3 2.5 DNA-binding response regulator, LuxR family compare
PP_3185 +0.3 1.6 Pet18 protein compare
PP_5569 +0.3 1.4 protein of unknown function of phage origin compare
PP_2257 +0.3 2.3 putative aerotaxis receptor compare
PP_1683 +0.3 1.2 Transcriptional regulator, MarR family compare
PP_2547 +0.3 1.2 Transcriptional regulator, LysR family compare
PP_5055 +0.3 1.1 Sulfurtransferase compare
PP_0770 +0.3 1.7 PemI-like protein compare
PP_5324 +0.3 0.7 Response regulator compare
PP_2575 +0.3 0.7 conserved exported protein of unknown function compare
PP_0497 +0.3 1.4 Transcriptional regulator, Cro/CI family compare
PP_1968 +0.3 1.7 TetR family transcriptional regulator compare
PP_4385 +0.3 1.5 flagellar basal-body rod protein FlgG compare
PP_5052 +0.3 1.3 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_2140 +0.3 1.8 conserved protein of unknown function compare
PP_5471 +0.3 0.8 putative response regulator receiver protein compare
PP_5644 +0.3 1.1 conserved membrane protein of unknown function compare
PP_5231 +0.3 1.9 putative (S)-2-haloacid dehalogenase compare
PP_2737 +0.3 0.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2794 +0.3 0.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2387 +0.3 1.2 conserved protein of unknown function compare
PP_4615 +0.3 2.4 conserved membrane protein of unknown function compare
PP_1218 +0.3 1.1 putative acyl-CoA thioesterase compare
PP_0313 +0.3 1.4 putative electron transfer flavoprotein beta subunit compare
PP_0874 +0.3 1.2 conserved protein of unknown function compare
PP_1239 +0.3 1.2 Metallo-beta-lactamase family protein compare
PP_0262 +0.3 1.7 conserved protein of unknown function compare
PP_5298 +0.3 1.1 putative glutamine amidotransferase compare
PP_2655 +0.3 1.3 conserved protein of unknown function compare
PP_3946 +0.3 0.4 HTH-type transcriptional repressor NicR compare
PP_5686 +0.3 1.2 protein of unknown function compare
PP_2530 +0.3 0.6 conserved protein of unknown function compare
PP_2510 +0.3 1.1 conserved protein of unknown function compare
PP_3217 +0.3 1.6 putative Periplasmic aliphatic sulfonate-binding protein compare
PP_4913 +0.3 1.6 conserved protein of unknown function compare
PP_3907 +0.3 2.0 conserved protein of unknown function compare
PP_4803 +0.3 2.1 D-alanyl-D-alanine carboxypeptidase compare
PP_1570 +0.3 1.7 Head-tail adaptor compare
PP_3929 +0.3 1.3 conserved protein of unknown function compare
PP_4094 +0.3 1.0 conserved protein of unknown function compare
PP_0711 +0.3 0.9 putative hydrolase compare
PP_2313 +0.3 1.0 conserved membrane protein of unknown function compare
PP_3043 +0.3 1.3 conserved protein of unknown function compare
PP_5553 +0.3 1.5 conserved protein of unknown function compare
PP_5490 +0.3 1.4 site-specific DNA recombinase compare
PP_4150 +0.3 1.1 microcin C transporter - ATP binding subunit compare
PP_4390 +0.3 2.2 flagellar basal-body rod protein FlgC compare
PP_2319 +0.3 1.7 conserved protein of unknown function compare
PP_4503 +0.3 1.4 DNA-binding response regulator compare
PP_0254 +0.3 1.5 conserved protein of unknown function compare
PP_0969 +0.3 2.0 Transcriptional regulator, GntR family compare
PP_2714 +0.3 2.0 Sensor histidine kinase compare
PP_4629 +0.3 1.6 Sensory box protein compare
PP_1087 +0.3 2.1 Outer membrane protein, OmpA family compare
PP_0610 +0.3 1.4 conserved exported protein of unknown function compare
PP_3766 +0.3 0.6 Lactoylglutathione lyase compare
PP_5311 +0.3 2.0 putative signal transduction protein compare
PP_0215 +0.3 1.8 Response regulator compare
PP_0063 +0.3 0.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3532 +0.3 1.0 Transcriptional regulator, AsnC family compare
PP_2323 +0.3 2.1 conserved protein of unknown function compare
PP_0305 +0.3 0.9 HTH-type transcriptional regulator CdhR compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source 1,2-Propanediol in Pseudomonas putida KT2440

For carbon source 1,2-Propanediol across organisms