Experiment set12IT032 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu2040 -4.0 -7.6 phosphoserine phosphatase compare
Atu0039 -3.9 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu0041 -3.9 -2.9 glutamine amidotransferase compare
Atu0040 -3.3 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3763 -3.2 -2.2 hypothetical protein compare
Atu0298 -3.1 -7.0 orotidine 5 compare
Atu6098 -3.1 -1.6 transcriptional regulator, HTH family compare
Atu2036 -2.9 -12.1 acetolactate synthase III, large subunit compare
Atu0679 -2.8 -5.7 ATP phosphoribosyltransferase compare
Atu0043 -2.7 -4.2 imidazoleglycerol-phosphate dehydratase compare
Atu0399 -2.7 -7.6 dihydroorotase compare
Atu3707 -2.7 -3.6 phosphoserine aminotransferase compare
Atu0678 -2.7 -8.8 histidyl-tRNA synthetase compare
Atu0486 -2.6 -3.9 dihydroorotate dehydrogenase compare
Atu3754 -2.6 -9.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3469 -2.5 -3.7 phosphoglyceromutase compare
Atu2728 -2.4 -4.3 beta (1-->2) glucan export ATP-binding protein compare
Atu3755 -2.4 -6.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1845 -2.3 -4.0 phosphoribosylformylglycinamidine synthase I compare
Atu0331 -2.3 -3.9 sigma-54 modulation protein compare
Atu1308 -2.3 -6.2 aspartate carbamoyl transferase catalytic subunit compare
Atu2684 -2.3 -1.7 hypothetical protein compare
Atu1513 -2.2 -6.3 ABC excinuclease subunit A compare
Atu3706 -2.2 -9.0 D-3-phosphoglycerate dehydrogenase compare
Atu0537 -2.1 -7.7 histidinol dehydrogenase compare
Atu1588 -2.1 -7.3 homoserine dehydrogenase compare
Atu1307 -2.0 -3.3 dihydroorotase compare
Atu0038 -2.0 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2207 -2.0 -3.2 two component sensor kinase compare
Atu0141 -1.9 -1.9 cytochrome O ubiquinol oxidase subunit I compare
Atu0769 -1.9 -2.0 protoheme IX farnesyltransferase compare
Atu4217 -1.9 -1.9 TetR family transcriptional regulator compare
Atu2125 -1.8 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu0400 -1.8 -3.0 orotate phosphoribosyltransferase compare
Atu4317 -1.8 -3.3 TetR family transcriptional regulator compare
Atu3885 -1.7 -7.3 inositol monophosphatase compare
Atu2718 -1.7 -6.5 homoserine O-succinyltransferase compare
Atu0029 -1.7 -5.0 S-adenosylhomocysteine hydrolase compare
Atu1647 -1.7 -7.4 ABC transporter, membrane spanning protein compare
Atu1030 -1.7 -1.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1750 -1.7 -4.5 phosphoribosyl c-AMP cyclohydrolase compare
Atu0647 -1.7 -6.3 phosphoribosylamine--glycine ligase compare
Atu2057 -1.6 -2.7 DNA helicase II compare
Atu1417 -1.6 -5.4 enoyl-CoA hydratase compare
Atu1075 -1.6 -4.8 amidophosphoribosyltransferase compare
Atu2554 -1.5 -2.8 lysyl-tRNA synthetase compare
Atu0784 -1.5 -3.1 hypothetical protein compare
Atu1129 -1.5 -6.3 excinuclease ABC chain C compare
Atu0142 -1.5 -1.9 cytochrome o ubiquinol oxidase subunit II compare
Atu1679 -1.5 -2.1 peptidyl prolyl cis-trans isomerase compare
Atu0361 -1.5 -3.2 transcriptional regulator compare
Atu3908 -1.5 -7.4 GntR family transcriptional regulator compare
Atu0030 -1.4 -1.7 phosphocarrier protein HPr compare
Atu0777 -1.4 -1.1 hypothetical protein compare
Atu4618 -1.4 -8.1 dTDP-rhamnose-3,5-epimerase compare
Atu1844 -1.4 -2.8 Phosphoribosylformylglycinamidine synthetase compare
Atu1645 -1.4 -6.3 ABC transporter, substrate binding protein compare
Atu1140 -1.4 -4.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1163 -1.4 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4773 -1.4 -1.9 two component response regulator compare
Atu3311 -1.4 -9.7 phosphomannose isomerase compare
Atu3353 -1.4 -8.9 mannose-1-phosphate guanylyltransferase compare
Atu1446 -1.4 -1.9 two component response regulator compare
Atu1705 -1.4 -3.0 SEC-independent protein translocase protein compare
Atu4617 -1.3 -6.2 dTDP-D-glucose-4,6-dehydratase compare
Atu0422 -1.3 -1.9 ABC transporter, membrane spanning protein compare
Atu1902 -1.3 -4.2 transketolase compare
Atu1141 -1.3 -3.4 Phosphoribosylglycinamide synthetase compare
Atu2183 -1.3 -4.9 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2832 -1.3 -2.7 tRNA modification GTPase compare
Atu1850 -1.2 -2.0 phosphoribosylformylglycinamidine synthetase II compare
Atu1028 -1.2 -2.4 hypothetical protein compare
Atu1447 -1.2 -2.0 two component sensor kinase compare
Atu1205 -1.2 -7.4 threonine dehydratase compare
Atu1364 -1.2 -4.7 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1646 -1.2 -4.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu1327 -1.2 -2.0 NADH-ubiquinone oxidoreductase compare
Atu2791 -1.2 -6.6 3-isopropylmalate dehydrogenase compare
Atu2439 -1.1 -1.4 hypothetical protein compare
Atu4613 -1.1 -8.6 glycosyltransferase compare
Atu0971 -1.1 -2.7 two component sensor kinase compare
Atu2073 -1.1 -3.0 membrane protein compare
Atu3750 -1.1 -2.2 thiamine-phosphate pyrophosphorylase compare
Atu8138 -1.1 -1.1 hypothetical protein compare
Atu0690 -1.1 -1.9 hypothetical protein compare
Atu1677 -1.1 -2.9 queuine tRNA-ribosyltransferase compare
Atu2289 -1.1 -7.6 anthranilate synthase component I and II compare
Atu3727 -1.1 -3.6 hypothetical protein compare
Atu0386 -1.1 -1.9 hypothetical protein compare
Atu1687 -1.1 -4.3 anthranilate phosphoribosyltransferase compare
Atu4614 -1.0 -5.2 glycosyltransferase compare
Atu3712 -1.0 -1.4 hypothetical protein compare
Atu4148 -1.0 -4.2 UDP-glucuronic acid epimerase compare
Atu0923 -1.0 -3.4 hypothetical protein compare
Atu1468 -1.0 -3.4 hypothetical protein compare
Atu3688 -1.0 -3.2 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1891 -1.0 -3.0 cobalamin biosynthesis protein compare
Atu2001 -1.0 -4.8 excinuclease ABC subunit B compare
Atu0184 -1.0 -2.2 glucokinase compare
Atu3121 -1.0 -1.3 cold shock protein compare
Atu2239 -1.0 -2.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu8167 -1.0 -5.6 putative transmembrane protein compare
Atu0205 -1.0 -6.1 methylmalonate-semialdehyde dehydrogenase compare
Atu0660 -1.0 -4.5 hydrolase compare
Atu0976 -1.0 -2.5 cycL protein compare
Atu2640 -0.9 -2.8 hypothetical protein compare
Atu0434 -0.9 -1.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4166 -0.9 -1.6 UDP-glucose 4-epimerase compare
Atu4677 -0.9 -1.3 hypothetical protein compare
Atu1874 -0.9 -2.1 RecA protein compare
Atu0051 -0.9 -3.1 two component sensor kinase compare
Atu0845 -0.9 -2.4 hypothetical protein compare
Atu0703 -0.9 -1.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2831 -0.9 -3.1 glucose inhibited division protein A compare
Atu3689 -0.9 -5.3 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2028 -0.9 -1.6 transcriptional regulator, ArsR family compare
Atu0368 -0.9 -3.5 tRNA pseudouridine synthase I compare
Atu1644 -0.9 -2.9 hypothetical protein compare
Atu2063 -0.9 -1.3 hypothetical protein compare
Atu1076 -0.9 -2.0 colicin V production protein compare
Atu0824 -0.9 -1.1 hypothetical protein compare
Atu1254 -0.9 -1.1 transcriptional regulator, ArsR family compare
Atu3623 -0.9 -2.5 DnaJ family molecular chaperone compare
Atu0269 -0.9 -2.8 exodeoxyribonuclease VII large subunit compare
Atu2615 -0.9 -3.1 hypothetical protein compare
Atu0894 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu2238 -0.9 -4.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1077 -0.9 -2.2 DNA repair protein compare
Atu1359 -0.8 -0.8 dnaK deletion suppressor protein compare
Atu2193 -0.8 -0.8 hypothetical protein compare
Atu0977 -0.8 -2.7 serine protease DO-like protease compare
Atu2274 -0.8 -4.1 cation efflux system protein compare
Atu1688 -0.8 -2.7 indole-3-glycerol-phosphate synthase compare
Atu0432 -0.8 -3.5 O-succinylhomoserine sulfhydrylase compare
Atu1182 -0.8 -1.6 hypothetical protein compare
Atu5470 -0.8 -0.8 hypothetical protein compare
Atu1602 -0.8 -3.0 transcriptional activator, Crp family compare
Atu2709 -0.8 -5.8 3-isopropylmalate dehydratase, large subunit compare
Atu0017 -0.8 -2.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3603 -0.8 -1.1 two component response regulator compare
Atu1774 -0.8 -2.9 ABC transporter, substrate binding protein (peptide) compare
Atu1173 -0.8 -4.6 MFS permease compare
Atu1258 -0.8 -2.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu2824 -0.8 -2.9 hypothetical protein compare
Atu4615 -0.8 -4.5 glucose-1-phosphate thymidylyltransferase compare
Atu0190 -0.8 -3.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3634 -0.8 -3.5 penicillin-binding protein dacf precursor compare
Atu2264 -0.8 -5.3 2-isopropylmalate synthase compare
Atu3495 -0.8 -4.8 diguanylate cyclase compare
Atu1285 -0.8 -4.0 metal dependent hydrolase compare
Atu1074 -0.8 -5.5 NAD/NADP dependent oxidoreductase compare
Atu4393 -0.8 -3.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
Atu1620 -0.8 -5.4 triosephosphate isomerase compare
Atu0153 -0.8 -3.3 transcriptional regulator, Fur family compare
Atu0086 -0.8 -0.8 ribosome-binding factor A compare
Atu3775 -0.7 -1.9 hypothetical protein compare
Atu0346 -0.7 -1.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2286 -0.7 -1.1 hypothetical protein compare
Atu0101 -0.7 -1.5 cytochrome c compare
Atu2800 -0.7 -1.4 precorrin-3B C17-methyltransferase compare
Atu0099 -0.7 -3.5 prephenate dehydratase compare
Atu3017 -0.7 -0.9 phosphoglyceromutase compare
Atu1714 -0.7 -1.1 exonuclease III compare
Atu0050 -0.7 -2.8 two component response regulator compare
Atu1683 -0.7 -1.0 hypothetical protein compare
Atu4610 -0.7 -4.0 sugar nucleotide epimerase/dehydratase compare
Atu2333 -0.7 -2.7 ATP-dependent RNA helicase compare
Atu3691 -0.7 -4.8 iron (III) dicitrate ABC transporter ATPase compare
Atu3249 -0.7 -3.7 septum formation inhibitor compare
Atu2184 -0.7 -2.3 transcriptional regulator, AsnC family compare
Atu3013 -0.7 -1.4 hypothetical protein compare
Atu2555 -0.7 -1.5 L-lysine 2,3-aminomutase compare
Atu0188 -0.7 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu2052 -0.7 -2.6 hypothetical protein compare
Atu2790 -0.7 -1.4 3-isopropylmalate dehydratase, small subunit compare
Atu1537 -0.7 -4.1 cytochrome-c oxidase, FixN chain compare
Atu2802 -0.7 -3.5 precorrin-8X methylmutase compare
Atu6020 -0.7 -3.1 conserved hypothetical protein compare
Atu1904 -0.7 -1.4 transcriptional regulator compare
Atu2192 -0.7 -0.9 hypothetical protein compare
Atu0163 -0.7 -3.3 tonB protein compare
Atu2432 -0.6 -0.8 hypothetical protein compare
Atu0973 -0.6 -3.1 cycH protein compare
Atu1528 -0.6 -4.5 nitrogen fixation protein FixI compare
Atu8087 -0.6 -0.7 putative peptidoglycan binding protein compare
Atu1223 -0.6 -0.8 hypothetical protein compare
Atu0893 -0.6 -2.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu2379 -0.6 -3.2 phosphomannomutase compare
Atu1530 -0.6 -4.4 nitrogen fixation protein FixG compare
Atu1099 -0.6 -2.4 hypothetical protein compare
Atu8183 -0.6 -2.0 hypothetical protein compare
Atu1339 -0.6 -1.9 ribonuclease E compare
Atu2616 -0.6 -2.8 hypothetical protein compare
Atu1039 -0.6 -2.1 DNA repair protein RecO compare
Atu0876 -0.6 -0.8 superoxide dismutase compare
Atu0572 -0.6 -1.8 hypothetical protein compare
Atu6019 -0.6 -4.7 D-nopaline dehydrogenase compare
Atu3423 -0.6 -1.5 hypothetical protein compare
Atu1619 -0.6 -1.7 protein-export membrane protein SECG compare
Atu1577 -0.6 -3.1 ABC transporter, substrate binding protein (amino acid) compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms