Experiment set12IT030 for Pseudomonas putida KT2440

Compare to:

3-Hydroxypropionate carbon source

200 most important genes:

  gene name fitness t score description  
PP_1988 -7.4 -8.8 3-isopropylmalate dehydrogenase compare
PP_0422 -7.3 -7.1 Indole-3-glycerol phosphate synthase compare
PP_0055 -6.8 -12.3 transcriptional regulator compare
PP_1986 -6.8 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_0787 -6.5 -6.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0056 -6.4 -16.9 choline dehydrogenase conserved
PP_5098 -6.2 -10.4 methionine biosynthesis protein MetW compare
PP_0966 -6.0 -13.3 Histidinol dehydrogenase compare
PP_0293 -5.9 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2433 -5.9 -4.8 conserved protein of unknown function compare
PP_4890 -5.8 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_2371 -5.8 -9.7 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -5.8 -5.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0417 -5.7 -22.3 Anthranilate synthase component 1 compare
PP_1995 -5.7 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -5.6 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_3511 -5.6 -9.9 Branched-chain-amino-acid aminotransferase compare
PP_0356 -5.6 -11.1 malate synthase G compare
PP_0967 -5.6 -10.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1231 -5.5 -7.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0421 -5.5 -8.3 Anthranilate phosphoribosyltransferase compare
PP_4678 -5.3 -15.5 Ketol-acid reductoisomerase compare
PP_4364 -5.2 -6.7 putative Anti-sigma F factor antagonist compare
PP_0595 -5.2 -11.8 Transcriptional regulator, LysR family compare
PP_0083 -5.2 -5.0 tryptophan synthase beta chain compare
PP_2001 -5.1 -11.6 O-succinylhomoserine sulfhydrylase compare
PP_0290 -5.1 -9.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4116 -5.1 -13.3 isocitrate lyase compare
PP_4909 -5.1 -10.5 phosphoserine phosphatase compare
PP_5085 -5.1 -5.0 malic enzyme B compare
PP_3999 -5.1 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4680 -5.0 -16.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4723 -5.0 -14.5 Carbamoyl-phosphate synthase large chain compare
PP_2328 -5.0 -10.1 Phosphoadenosine phosphosulfate reductase compare
PP_0597 -5.0 -16.4 methylmalonate-semialdehyde dehydrogenase compare
PP_5155 -4.8 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4724 -4.8 -8.7 Carbamoyl-phosphate synthase small chain compare
PP_5097 -4.7 -12.1 homoserine O-acetyltransferase compare
PP_1826 -4.7 -4.1 Hydrolase, isochorismatase family compare
PP_5095 -4.7 -3.2 pyrroline-5-carboxylate reductase compare
PP_4799 -4.6 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4999 -4.6 -3.1 dihydroorotase-like protein compare
PP_1088 -4.5 -13.3 Argininosuccinate synthase compare
PP_0289 -4.5 -7.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4699 -4.5 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0691 -4.5 -5.5 Glutamate 5-kinase compare
PP_0082 -4.4 -6.0 tryptophan synthase alpha chain compare
PP_2868 -4.4 -10.6 Transcriptional regulator, Cro/CI family compare
PP_0184 -4.4 -6.0 Argininosuccinate lyase compare
PP_2168 -4.4 -12.5 Transaldolase compare
PP_5128 -4.3 -7.6 Dihydroxy-acid dehydratase compare
PP_0965 -4.2 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5015 -4.2 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1079 -4.1 -8.2 Ornithine carbamoyltransferase compare
PP_4058 -4.1 -14.2 1,4-alpha-glucan branching enzyme compare
PP_4565 -4.1 -13.3 Isocitrate dehydrogenase kinase/phosphatase conserved
PP_0596 -4.0 -7.9 Omega-amino acid--pyruvate aminotransferase compare
PP_4679 -4.0 -7.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -3.9 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5659 -3.8 -3.3 protein of unknown function compare
PP_4696 -3.8 -4.5 Nitrogen regulation protein NR(I) compare
PP_2370 -3.6 -3.3 conserved protein of unknown function compare
PP_5289 -3.6 -4.2 Acetylglutamate kinase compare
PP_4126 -3.5 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_5347 -3.5 -12.2 pyruvate carboxylase subunit A compare
PP_5346 -3.5 -10.4 pyruvate carboxylase subunit B compare
PP_5185 -3.4 -7.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4122 -3.4 -3.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1984 -3.3 -8.1 Transcriptional regulator, LysR family compare
PP_4129 -3.2 -4.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4828 -3.2 -1.7 Precorrin-8X methylmutase compare
PP_4120 -3.2 -5.2 NADH-quinone oxidoreductase subunit B compare
PP_1025 -3.1 -9.7 2-isopropylmalate synthase compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_0406 -3.0 -5.9 Nucleotidyltransferase family protein compare
PP_2132 -2.9 -3.0 Universal stress protein compare
PP_3821 -2.8 -8.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1994 -2.8 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_4131 -2.7 -8.2 NADH-quinone oxidoreductase subunit N compare
PP_0291 -2.7 -3.0 conserved protein of unknown function compare
PP_0735 -2.7 -3.0 molybdopterin-synthase adenylyltransferase compare
PP_2327 -2.6 -4.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0164 -2.6 -8.0 conserved protein of unknown function compare
PP_4695 -2.5 -8.8 Sensory box histidine kinase compare
PP_1778 -2.5 -6.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1654 -2.5 -4.5 cysteine synthase B compare
PP_3484 -2.5 -5.2 Response regulator receiver protein compare
PP_0420 -2.3 -7.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5104 -2.3 -8.3 thiazole synthase compare
PP_1216 -2.3 -3.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1198 -2.3 -4.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1233 -2.2 -4.8 sulfurtransferase compare
PP_4782 -2.2 -5.5 Phosphomethylpyrimidine kinase compare
PP_0248 -2.1 -11.9 Probable alpha-L-glutamate ligase compare
PP_4734 -2.1 -6.9 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4124 -2.1 -5.0 NADH-quinone oxidoreductase subunit G compare
PP_1664 -2.0 -3.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_4121 -1.9 -5.6 NADH-quinone oxidoreductase subunit C/D compare
PP_4532 -1.9 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1381 -1.9 -1.8 4-carboxymuconolactone decarboxylase compare
PP_5217 -1.8 -11.4 Polyphosphate kinase compare
PP_5348 -1.8 -6.4 Transcriptional regulator, LysR family compare
PP_3491 -1.7 -8.6 Enoly-coenzyme A hydratase/isomerase family protein compare
PP_2402 -1.7 -2.6 putative Sensor histidine kinase compare
PP_1355 -1.6 -13.2 Muropeptide permease AmpG compare
PP_4130 -1.6 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1733 -1.6 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1217 -1.6 -4.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5035 -1.6 -4.7 Histidine utilization repressor compare
PP_3102 -1.6 -4.3 conserved protein of unknown function compare
PP_1428 -1.6 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_0405 -1.5 -11.0 conserved protein of unknown function compare
PP_4830 -1.5 -5.1 precorrin-6Y C(5,15)-methyltransferase compare
PP_1783 -1.5 -1.0 dTDP-glucose pyrophosphorylase compare
PP_0434 -1.5 -10.0 Anhydro-N-acetylmuramic acid kinase compare
PP_1779 -1.5 -4.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4098 -1.4 -2.9 UvrABC system protein C compare
PP_4681 -1.4 -1.7 conserved protein of unknown function compare
PP_5267 -1.4 -2.8 putative cytochrome c5 compare
PP_1215 -1.4 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_4940 -1.4 -5.1 Putative glycosyltransferase compare
PP_4143 -1.4 -3.8 conserved protein of unknown function compare
PP_1328 -1.4 -1.7 Protein MraZ compare
PP_0435 -1.4 -8.5 Peptidase, M23/M37 family compare
PP_2087 -1.3 -2.7 CmpX protein compare
PP_1493 -1.3 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4943 -1.3 -2.4 putative Glycosyl transferase compare
PP_1681 -1.3 -7.6 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0362 -1.3 -7.4 Biotin synthase compare
PP_3508 -1.2 -1.5 Protein CobW compare
PP_1677 -1.2 -4.0 Adenosyl-cobyric acid synthase compare
PP_4910 -1.2 -1.9 conserved protein of unknown function compare
PP_0789 -1.2 -4.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1629 -1.2 -3.6 Protein RecA compare
PP_1468 -1.2 -1.6 Tyrosine recombinase XerD compare
PP_1673 -1.2 -3.7 cobyrinate a,c-diamide synthase compare
PP_1074 -1.2 -3.0 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4247 -1.2 -1.8 Exonuclease compare
PP_5717 -1.2 -1.7 conserved protein of unknown function compare
PP_4922 -1.2 -5.9 Phosphomethylpyrimidine synthase compare
PP_1348 -1.2 -6.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2375 -1.2 -6.8 cobalamin-dependent methionine synthase compare
PP_1589 -1.2 -6.5 uridylyltransferase compare
PP_5227 -1.2 -4.4 diaminopimelate decarboxylase compare
PP_3637 -1.1 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0833 -1.1 -1.4 queuine tRNA-ribosyltransferase compare
PP_5054 -1.1 -2.0 glutaredoxin 3 compare
PP_5310 -1.1 -4.0 junction-specific ATP-dependent DNA helicase compare
PP_3903 -1.1 -1.6 conserved protein of unknown function compare
PP_3603 -1.1 -5.0 Transcriptional regulator, GntR family compare
PP_2217 -1.1 -2.2 enoyl-CoA hydratase compare
PP_2568 -1.1 -1.3 Ring-cleaving dioxygenase compare
PP_4668 -1.1 -6.0 Transcriptional regulator, LysR family compare
PP_4977 -1.1 -5.7 5,10-methylenetetrahydrofolate reductase compare
PP_0516 -1.1 -2.1 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_5198 -1.1 -2.1 conserved protein of unknown function compare
PP_2153 -1.1 -2.7 conserved protein of unknown function compare
PP_1111 -1.1 -4.9 putative Synthetase compare
PP_1764 -1.0 -3.6 Phosphoglycolate phosphatase 2 compare
PP_2388 -1.0 -3.2 Transporter, LysE family compare
PP_1110 -1.0 -2.2 serine acetyltransferase compare
PP_0792 -1.0 -4.9 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_1309 -1.0 -5.1 conserved exported protein of unknown function compare
PP_2145 -1.0 -4.2 beta-N-acetylglucosaminidase compare
PP_1675 -1.0 -4.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0653 -1.0 -1.3 conserved protein of unknown function compare
PP_4827 -1.0 -5.1 Precorrin-2 C(20)-methyltransferase compare
PP_1656 -1.0 -5.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_1269 -1.0 -1.4 Universal stress protein family compare
PP_4993 -1.0 -2.5 Glutathione synthetase compare
PP_1366 -1.0 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_4273 -1.0 -1.8 Transcriptional regulator, MerR family compare
PP_3971 -1.0 -1.7 conserved protein of unknown function compare
PP_4258 -1.0 -3.2 cytochrome c oxidase subunit, cbb3-type compare
PP_3506 -1.0 -1.4 Magnesium chelatase, subunit ChII compare
PP_1864 -0.9 -2.4 conserved protein of unknown function compare
PP_4254 -0.9 -1.5 conserved protein of unknown function compare
PP_3409 -0.9 -1.8 putative Cobalamin biosynthesis protein cobE compare
PP_4008 -0.9 -4.2 ATP-dependent serine protease compare
PP_2144 -0.9 -3.2 Transcriptional regulator, TetR family compare
PP_0794 -0.9 -3.0 1-phosphofructokinase monomer compare
PP_0065 -0.9 -1.9 NAD-binding component of TrK potassium transporter compare
PP_1734 -0.9 -1.9 Probable septum site-determining protein MinC compare
PP_0413 -0.9 -6.6 Polyamine ABC transporter, permease protein compare
PP_4482 -0.9 -2.8 Transcriptional regulator, AraC family compare
PP_4726 -0.9 -1.8 Chaperone protein DnaJ compare
PP_4832 -0.9 -1.9 Precorrin-6x reductase compare
PP_3507 -0.9 -6.2 Aerobic cobaltochelatase subunit CobN compare
PP_1109 -0.9 -6.6 Transcriptional regulator, GntR family compare
PP_5203 -0.9 -5.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_1364 -0.9 -5.1 conserved exported protein of unknown function compare
PP_1672 -0.9 -2.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_3876 -0.8 -2.0 conserved protein of unknown function compare
PP_4874 -0.8 -0.6 50S ribosomal protein L9 compare
PP_0673 -0.8 -1.4 conserved protein of unknown function compare
PP_4902 -0.8 -1.3 Oligoribonuclease compare
PP_3035 -0.8 -1.6 conserved protein of unknown function compare
PP_1678 -0.8 -2.6 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3198 -0.8 -2.0 Ferredoxin, 2Fe-2S compare
PP_1860 -0.8 -2.5 Organic hydroperoxide resistance transcriptional regulator compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 3-Hydroxypropionate in Pseudomonas putida KT2440

For carbon source 3-Hydroxypropionate across organisms