Experiment set12IT030 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu1030 -4.6 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1359 -4.5 -1.2 dnaK deletion suppressor protein compare
Atu4217 -4.0 -1.8 TetR family transcriptional regulator compare
Atu0769 -4.0 -2.1 protoheme IX farnesyltransferase compare
Atu4616 -3.9 -2.3 dTDP-4-dehydrorhamnose reductase compare
Atu0039 -3.7 -2.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu0043 -3.6 -3.2 imidazoleglycerol-phosphate dehydratase compare
Atu1844 -3.4 -3.0 Phosphoribosylformylglycinamidine synthetase compare
Atu0678 -3.3 -5.2 histidyl-tRNA synthetase compare
Atu1588 -3.2 -7.2 homoserine dehydrogenase compare
Atu0040 -3.2 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0876 -3.2 -1.5 superoxide dismutase compare
Atu0026 -3.1 -1.2 hypothetical protein compare
Atu2125 -3.1 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3469 -2.9 -2.4 phosphoglyceromutase compare
Atu3763 -2.9 -1.5 hypothetical protein compare
Atu2036 -2.9 -11.8 acetolactate synthase III, large subunit compare
Atu0953 -2.8 -1.0 hypothetical protein compare
Atu0354 -2.8 -2.8 ferric uptake regulator compare
Atu0086 -2.8 -1.5 ribosome-binding factor A compare
Atu1874 -2.7 -3.5 RecA protein compare
Atu0537 -2.7 -6.8 histidinol dehydrogenase compare
Atu0041 -2.6 -2.0 glutamine amidotransferase compare
Atu2368 -2.5 -1.1 hypothetical protein compare
Atu8088 -2.5 -2.2 hypothetical protein compare
Atu2207 -2.5 -3.5 two component sensor kinase compare
Atu0422 -2.4 -1.7 ABC transporter, membrane spanning protein compare
Atu0895 -2.4 -3.4 ABC transporter, substrate binding protein compare
Atu1750 -2.4 -5.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu0886 -2.3 -1.2 hypothetical protein compare
Atu3707 -2.2 -2.5 phosphoserine aminotransferase compare
Atu3706 -2.0 -6.9 D-3-phosphoglycerate dehydrogenase compare
Atu5430 -2.0 -1.6 hypothetical protein compare
Atu3885 -2.0 -8.8 inositol monophosphatase compare
Atu4618 -1.9 -7.7 dTDP-rhamnose-3,5-epimerase compare
Atu1513 -1.9 -4.8 ABC excinuclease subunit A compare
Atu0679 -1.9 -3.9 ATP phosphoribosyltransferase compare
Atu0486 -1.9 -3.7 dihydroorotate dehydrogenase compare
Atu0723 -1.9 -1.8 FAD dependent oxidoreductase compare
Atu4317 -1.9 -3.1 TetR family transcriptional regulator compare
Atu2113 -1.8 -2.4 N-acetylmuramoyl-L-alanine amidase compare
Atu0690 -1.8 -2.2 hypothetical protein compare
Atu0038 -1.8 -2.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0361 -1.8 -2.4 transcriptional regulator compare
Atu2555 -1.8 -2.2 L-lysine 2,3-aminomutase compare
Atu0298 -1.7 -6.2 orotidine 5 compare
Atu1646 -1.7 -3.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3353 -1.7 -7.2 mannose-1-phosphate guanylyltransferase compare
Atu0331 -1.7 -2.4 sigma-54 modulation protein compare
Atu0099 -1.7 -7.4 prephenate dehydratase compare
Atu1417 -1.7 -6.0 enoyl-CoA hydratase compare
Atu8191 -1.7 -1.6 hypothetical protein compare
Atu2439 -1.7 -1.1 hypothetical protein compare
Atu3908 -1.6 -8.7 GntR family transcriptional regulator compare
Atu4166 -1.6 -1.4 UDP-glucose 4-epimerase compare
Atu1205 -1.6 -8.1 threonine dehydratase compare
Atu0029 -1.6 -3.7 S-adenosylhomocysteine hydrolase compare
Atu0141 -1.6 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu3754 -1.6 -3.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0142 -1.6 -2.7 cytochrome o ubiquinol oxidase subunit II compare
Atu1845 -1.6 -2.8 phosphoribosylformylglycinamidine synthase I compare
Atu2067 -1.6 -0.8 hypothetical protein compare
Atu3311 -1.5 -8.6 phosphomannose isomerase compare
Atu0659 -1.5 -4.5 NTP pyrophosphohydrolase, MutT family compare
Atu0912 -1.5 -0.7 Na+/H+ antiporter compare
Atu2040 -1.5 -3.5 phosphoserine phosphatase compare
Atu0340 -1.5 -1.2 SAM dependent methyltransferase compare
Atu2718 -1.5 -4.1 homoserine O-succinyltransferase compare
Atu0894 -1.5 -1.6 ABC transporter, membrane spanning protein compare
Atu0399 -1.5 -4.6 dihydroorotase compare
Atu1667 -1.4 -1.2 hypothetical protein compare
Atu1163 -1.4 -0.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8087 -1.4 -0.8 putative peptidoglycan binding protein compare
Atu0036 -1.4 -1.3 hypothetical protein compare
Atu1308 -1.4 -3.3 aspartate carbamoyl transferase catalytic subunit compare
Atu2183 -1.4 -4.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4671 -1.4 -3.2 response regulator compare
Atu0184 -1.4 -2.0 glucokinase compare
Atu1619 -1.3 -1.9 protein-export membrane protein SECG compare
Atu1850 -1.3 -1.6 phosphoribosylformylglycinamidine synthetase II compare
Atu3730 -1.3 -1.0 hypothetical protein compare
Atu1364 -1.3 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3755 -1.3 -3.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1683 -1.3 -1.6 hypothetical protein compare
Atu4617 -1.3 -4.6 dTDP-D-glucose-4,6-dehydratase compare
Atu4615 -1.3 -4.6 glucose-1-phosphate thymidylyltransferase compare
Atu1307 -1.3 -3.1 dihydroorotase compare
Atu0205 -1.3 -6.4 methylmalonate-semialdehyde dehydrogenase compare
Atu0031 -1.3 -0.9 PTS system, IIA component compare
Atu1141 -1.3 -3.5 Phosphoribosylglycinamide synthetase compare
Atu0050 -1.3 -3.2 two component response regulator compare
Atu0030 -1.3 -1.1 phosphocarrier protein HPr compare
Atu2052 -1.3 -3.2 hypothetical protein compare
Atu6131 -1.2 -4.0 TraR Antiactivator compare
Atu0977 -1.2 -2.5 serine protease DO-like protease compare
Atu1688 -1.2 -3.9 indole-3-glycerol-phosphate synthase compare
Atu4613 -1.2 -6.2 glycosyltransferase compare
Atu4614 -1.2 -4.1 glycosyltransferase compare
Atu2192 -1.2 -0.9 hypothetical protein compare
Atu1677 -1.2 -3.6 queuine tRNA-ribosyltransferase compare
Atu0153 -1.2 -2.7 transcriptional regulator, Fur family compare
Atu2728 -1.2 -2.6 beta (1-->2) glucan export ATP-binding protein compare
Atu3727 -1.2 -3.1 hypothetical protein compare
Atu3609 -1.2 -2.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu8138 -1.2 -1.1 hypothetical protein compare
Atu2289 -1.2 -6.5 anthranilate synthase component I and II compare
Atu4161 -1.2 -1.2 hypothetical protein compare
Atu2379 -1.2 -4.7 phosphomannomutase compare
Atu5540 -1.2 -0.8 hypothetical protein compare
Atu5467 -1.1 -2.2 hypothetical protein compare
Atu8144 -1.1 -1.9 hypothetical protein compare
Atu0703 -1.1 -1.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu3496 -1.1 -1.6 hypothetical protein compare
Atu4610 -1.1 -5.4 sugar nucleotide epimerase/dehydratase compare
Atu0400 -1.1 -1.5 orotate phosphoribosyltransferase compare
Atu1466 -1.1 -1.1 hypothetical protein compare
Atu0051 -1.1 -3.3 two component sensor kinase compare
Atu2824 -1.1 -2.4 hypothetical protein compare
Atu2831 -1.1 -2.6 glucose inhibited division protein A compare
Atu1075 -1.1 -2.6 amidophosphoribosyltransferase compare
Atu0845 -1.1 -2.3 hypothetical protein compare
Atu3017 -1.0 -1.0 phosphoglyceromutase compare
Atu1028 -1.0 -1.3 hypothetical protein compare
Atu0017 -1.0 -1.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4711 -1.0 -3.9 two component sensor kinase compare
Atu2827 -1.0 -2.0 hypothetical protein compare
Atu0784 -1.0 -1.6 hypothetical protein compare
Atu1679 -1.0 -1.1 peptidyl prolyl cis-trans isomerase compare
Atu4055 -1.0 -2.8 endo-1,3-1,4-beta-glycanase compare
Atu4435 -1.0 -2.9 oligopeptide ABC transporter ATPase compare
Atu5124 -1.0 -6.1 glutamate-1-semialdehyde aminotransferase compare
Atu0677 -1.0 -1.1 hypothetical protein compare
Atu1405 -1.0 -2.2 transcriptional regulator, GntR family compare
Atu8046 -1.0 -1.6 hypothetical protein compare
Atu3572 -1.0 -3.6 transcriptional regulator compare
Atu0269 -1.0 -2.3 exodeoxyribonuclease VII large subunit compare
Atu1645 -1.0 -3.8 ABC transporter, substrate binding protein compare
Atu4050 -1.0 -1.5 UTP-glucose-1-phosphate uridylyltransferase compare
Atu1647 -1.0 -3.2 ABC transporter, membrane spanning protein compare
Atu1687 -0.9 -2.6 anthranilate phosphoribosyltransferase compare
Atu0432 -0.9 -2.7 O-succinylhomoserine sulfhydrylase compare
Atu1660 -0.9 -1.7 hypothetical protein compare
Atu2640 -0.9 -1.9 hypothetical protein compare
Atu2793 -0.9 -2.2 cobyrinic acid a,c-diamide synthase compare
Atu8166 -0.9 -2.0 hypothetical protein compare
Atu2801 -0.9 -1.7 precorrin-2 C20 methyltransferase compare
Atu6098 -0.9 -0.5 transcriptional regulator, HTH family compare
Atu2264 -0.9 -4.4 2-isopropylmalate synthase compare
Atu4702 -0.9 -3.4 GntR family transcriptional regulator compare
Atu0846 -0.9 -1.7 transcriptional regulator, MarR family compare
Atu0295 -0.9 -1.8 hypothetical protein compare
Atu3009 -0.9 -0.9 exopolysaccharide production protein compare
Atu6019 -0.9 -5.4 D-nopaline dehydrogenase compare
Atu1455 -0.9 -1.6 hypothetical protein compare
Atu3644 -0.9 -2.0 hypothetical protein compare
Atu0346 -0.9 -0.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2554 -0.9 -1.2 lysyl-tRNA synthetase compare
Atu1204 -0.9 -2.3 potassium uptake protein compare
Atu1708 -0.9 -2.5 hypothetical protein compare
Atu1229 -0.9 -1.3 hypothetical protein compare
Atu8161 -0.9 -0.8 hypothetical protein compare
Atu2832 -0.9 -2.3 tRNA modification GTPase compare
Atu1904 -0.9 -3.3 transcriptional regulator compare
Atu4379 -0.9 -2.2 cytochrome c2 compare
Atu3507 -0.9 -1.8 hypothetical protein compare
Atu1902 -0.9 -3.3 transketolase compare
Atu1831 -0.9 -2.9 hypothetical protein compare
Atu0368 -0.9 -2.9 tRNA pseudouridine synthase I compare
Atu1447 -0.8 -1.4 two component sensor kinase compare
Atu6020 -0.8 -2.2 conserved hypothetical protein compare
Atu0477 -0.8 -0.8 hypothetical protein compare
Atu1644 -0.8 -1.4 hypothetical protein compare
Atu8025 -0.8 -0.7 hypothetical protein compare
Atu2001 -0.8 -3.8 excinuclease ABC subunit B compare
Atu1021 -0.8 -1.1 outer membrane protein compare
Atu3963 -0.8 -3.9 GntR family transcriptional regulator compare
Atu0434 -0.8 -1.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1301 -0.8 -1.0 hypothetical protein compare
Atu3485 -0.8 -3.7 short chain dehydrogenase compare
Atu3688 -0.8 -1.6 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu1129 -0.8 -3.1 excinuclease ABC chain C compare
Atu2104 -0.8 -2.4 hypothetical protein compare
Atu4599 -0.8 -3.6 IclR family transcriptional regulator compare
Atu5125 -0.8 -3.6 GntR family transcriptional regulator compare
Atu3162 -0.8 -3.5 LacI family transcriptional regulator compare
Atu2333 -0.8 -3.5 ATP-dependent RNA helicase compare
Atu2615 -0.8 -2.4 hypothetical protein compare
Atu2248 -0.8 -1.8 hypothetical protein compare
Atu2768 -0.8 -2.2 hypothetical protein compare
Atu2709 -0.8 -4.9 3-isopropylmalate dehydratase, large subunit compare
Atu1581 -0.8 -1.0 hypothetical protein compare
Atu4713 -0.8 -2.9 hypothetical protein compare
Atu3566 -0.8 -1.8 hypothetical protein compare
Atu0662 -0.8 -2.6 transcriptional regulator, GntR family compare
Atu2193 -0.8 -0.5 hypothetical protein compare
Atu3008 -0.8 -0.6 hypothetical protein compare
Atu0093 -0.8 -1.8 Recombination protein compare
Atu1678 -0.8 -3.2 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu8040 -0.8 -2.0 hypothetical protein compare
Atu0971 -0.8 -1.3 two component sensor kinase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms