Experiment set12IT030 for Agrobacterium fabrum C58

Compare to:

Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most detrimental genes:

  gene name fitness t score description  
Atu2017 +2.0 1.6 hypothetical protein compare
Atu3423 +1.6 1.4 hypothetical protein compare
Atu0107 +1.2 3.0 hypothetical protein compare
Atu0777 +1.2 1.2 hypothetical protein compare
Atu4187 +1.1 1.6 tRNA-Met compare
Atu4072 +1.1 1.4 nodulation protein N compare
Atu3160 +1.0 2.2 hypothetical protein compare
Atu0762 +1.0 2.4 hypothetical protein compare
Atu3073 +1.0 3.9 aspartate racemase compare
Atu1026 +0.9 2.4 hypothetical protein compare
Atu3663 +0.9 1.3 hypothetical protein compare
Atu3001 +0.9 2.9 hypothetical protein compare
Atu0182 +0.9 1.9 transcriptional regulator, GntR family compare
Atu0924 +0.9 1.4 hypothetical protein compare
Atu2675 +0.9 1.5 hypothetical protein compare
Atu8177 +0.9 3.5 hypothetical protein compare
Atu4144 +0.9 1.0 hypothetical protein compare
Atu1737 +0.9 0.8 hypothetical protein compare
Atu0540 +0.9 1.3 hypothetical protein compare
Atu8185 +0.8 1.7 hypothetical protein compare
Atu4838 +0.8 3.0 outer membrane lipoprotein compare
Atu0842 +0.8 1.2 hypothetical protein compare
Atu0640 +0.8 1.5 hypothetical protein compare
Atu1264 +0.8 1.8 hypothetical protein compare
Atu1260 +0.8 1.2 hypothetical protein compare
Atu1423 +0.8 3.1 hypothetical protein compare
Atu0435 +0.8 1.2 tRNA-Gly compare
Atu8082 +0.8 0.9 hypothetical protein compare
Atu2063 +0.8 1.5 hypothetical protein compare
Atu2634 +0.8 1.3 hypothetical protein compare
Atu1629 +0.8 1.0 transcriptional regulator, ArsR family compare
Atu2163 +0.8 0.8 hypothetical protein compare
Atu4897 +0.8 1.3 hypothetical protein compare
Atu5468 +0.8 2.3 hypothetical protein compare
Atu4237 +0.8 1.7 hypothetical protein compare
Atu2432 +0.8 1.8 hypothetical protein compare
Atu4586 +0.8 2.4 choloylglycine hydrolase family protein compare
Atu3135 +0.8 2.6 ABC transporter permease compare
Atu1642 +0.7 1.4 hypothetical protein compare
Atu0201 +0.7 0.7 hypothetical protein compare
Atu4214 +0.7 2.0 cold shock protein compare
Atu4854 +0.7 3.2 hypothetical protein compare
Atu0319 +0.7 0.9 ubiquinone biosynthesis protein compare
Atu2025 +0.7 2.2 transcriptional regulator compare
Atu3071 +0.7 2.4 hypothetical protein compare
Atu3892 +0.7 2.2 hypothetical protein compare
Atu3183 +0.7 0.8 hypothetical protein compare
Atu8029 +0.7 1.4 hypothetical protein compare
Atu4792 +0.7 1.1 hypothetical protein compare
Atu3100 +0.7 2.3 sugar ABC transporter permease compare
Atu4095 +0.7 0.9 hypothetical protein compare
Atu1182 +0.7 1.3 hypothetical protein compare
Atu3721 +0.7 1.3 hypothetical protein compare
Atu0938 +0.7 1.2 transcriptional regulator, MerR family compare
Atu0730 +0.7 1.5 hypothetical protein compare
Atu3006 +0.7 2.8 hypothetical protein compare
Atu0888 +0.7 1.8 transcriptional regulator, MerR family compare
Atu1409 +0.6 2.0 ureidoglycolate hydrolase compare
Atu1354 +0.6 0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1754 +0.6 1.2 hypothetical protein compare
Atu1160 +0.6 2.1 hypothetical protein compare
Atu2056 +0.6 1.9 hypothetical protein compare
Atu5451 +0.6 1.0 hypothetical protein compare
Atu3106 +0.6 2.3 sugar ABC transporter substrate-binding protein compare
Atu4527 +0.6 1.1 hypothetical protein compare
Atu1847 +0.6 1.1 hypothetical protein compare
Atu0997 +0.6 2.2 hypothetical protein compare
Atu3005 +0.6 0.8 hypothetical protein compare
Atu1446 +0.6 0.8 two component response regulator compare
Atu5527 +0.6 2.3 NADH-dependent FMN reductase compare
Atu3392 +0.6 1.8 methyltransferase compare
Atu3864 +0.6 2.3 hypothetical protein compare
Atu2293 +0.6 1.6 hypothetical protein compare
Atu0795 +0.6 0.7 hypothetical protein compare
Atu5045 +0.6 0.9 hypothetical protein compare
Atu0496 +0.6 2.2 hypothetical protein compare
Atu2712 +0.6 2.1 ABC transporter, nucleotide binding/ATPase protein (thiamine) compare
Atu1570 +0.6 0.4 hypothetical protein compare
Atu4458 +0.6 1.9 hypothetical protein compare
Atu5102 +0.6 3.1 hypothetical protein compare
Atu1355 +0.6 2.3 hypothetical protein compare
Atu1495 +0.6 1.1 hypothetical protein compare
Atu6189 +0.6 0.7 protein secretion chaperone compare
Atu2380 +0.6 1.3 hypothetical protein compare
Atu1254 +0.6 0.6 transcriptional regulator, ArsR family compare
Atu2534 +0.6 2.3 outer membrane protein compare
Atu5501 +0.6 1.1 hypothetical protein compare
Atu4835 +0.6 3.9 glucose-6-phosphate 1-dehydrogenase compare
Atu1967 +0.6 1.4 hypothetical protein compare
Atu1351 +0.6 2.1 hypothetical protein compare
Atu1638 +0.6 2.2 hypothetical protein compare
Atu2757 +0.6 1.4 nitrogen regulatory protein PII compare
Atu0479 +0.6 2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu3159 +0.6 1.9 3-hydroxyisobutyrate dehydrogenase compare
Atu1346 +0.6 1.9 phenazine antibiotic biosynthesis related protein compare
Atu3052 +0.6 1.6 MarR family transcriptional regulator compare
Atu0223 +0.6 3.6 components of type IV pilus, prepilin peptidase compare
Atu5475 +0.6 1.3 hypothetical protein compare
Atu4837 +0.5 1.9 hypothetical protein compare
Atu1500 +0.5 1.5 rare lipoprotein A compare
Atu1398 +0.5 1.7 ABC transporter, membrane spanning protein (amino acid) compare
Atu0884 +0.5 1.7 hypothetical protein compare
Atu4869 +0.5 1.5 hypothetical protein compare
Atu3056 +0.5 3.6 beta 1,3 glucan synthase catalytic subunit compare
Atu3053 +0.5 3.6 peptide ABC transporter ATPase compare
Atu1508 +0.5 3.0 hypothetical protein compare
Atu4313 +0.5 1.5 sarcosine oxidase gamma subunit compare
Atu0809 +0.5 0.8 hypothetical protein compare
Atu2378 +0.5 1.4 hypothetical protein compare
Atu4589 +0.5 1.3 transmembrane transport protein compare
Atu2611 +0.5 2.7 hypothetical protein compare
Atu3042 +0.5 2.6 hypothetical protein compare
Atu4540 +0.5 1.2 protocatechuate 3,4-dioxygenase subunit beta compare
Atu3126 +0.5 2.0 hypothetical protein compare
Atu5196 +0.5 2.0 hypothetical protein compare
Atu5121 +0.5 2.4 two component response regulator compare
Atu1189 +0.5 0.8 hypothetical protein compare
Atu6045 +0.5 0.9 replication protein C compare
Atu2567 +0.5 2.2 thiamin biosynthesis protein ThiG compare
Atu3094 +0.5 3.6 methyl-accepting chemotaxis protein compare
Atu3780 +0.5 1.6 hypothetical protein compare
Atu0580 +0.5 1.2 flagellar biosynthetic protein compare
Atu1366 +0.5 1.3 hypothetical protein compare
Atu2631 +0.5 1.8 hypothetical protein compare
Atu1627 +0.5 1.7 ATP-dependent Clp protease, proteolytic subunit compare
Atu1399 +0.5 1.6 ABC transporter, substrate binding protein (amino acid) compare
Atu2272 +0.5 1.6 hypothetical protein compare
Atu0986 +0.5 0.6 hypothetical protein compare
Atu3072 +0.5 2.8 peptide synthetase compare
Atu4525 +0.5 2.0 oligopeptide ABC transporter substrate-binding protein compare
Atu2069 +0.5 1.5 hypothetical protein compare
Atu0280 +0.5 1.2 hypothetical protein compare
Atu1857 +0.5 1.7 inositol monophosphatase family protein compare
Atu4026 +0.5 1.4 hypothetical protein compare
Atu5088 +0.5 0.9 hypothetical protein compare
Atu4345 +0.5 1.1 hypothetical protein compare
Atu4595 +0.5 2.0 dehydrogenase compare
Atu3026 +0.5 1.5 short chain dehydrogenase compare
Atu2153 +0.5 2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu1858 +0.5 1.1 hypothetical protein compare
Atu3145 +0.5 1.8 pectin degradation protein compare
Atu3089 +0.5 1.9 spermidine/putrescine ABC transporter ATPase compare
Atu3093 +0.5 2.6 transglycosylase compare
Atu5146 +0.5 1.2 hypothetical protein compare
Atu1102 +0.5 1.2 hypothetical protein compare
Atu0782 +0.5 1.4 hypothetical protein compare
Atu8162 +0.5 0.6 hypothetical protein compare
Atu3345 +0.5 1.1 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu1225 +0.5 0.6 hypothetical protein compare
Atu2489 +0.5 2.0 hypothetical protein compare
Atu2732 +0.5 1.8 hippurate hydrolase compare
Atu3294 +0.5 1.8 GntR family transcriptional regulator compare
Atu3044 +0.5 1.9 asparaginase compare
Atu8032 +0.5 0.8 hypothetical protein compare
Atu5145 +0.5 1.2 acetyltransferase compare
Atu1869 +0.5 1.7 hypothetical protein compare
Atu4818 +0.5 1.5 AsnC family transcriptional regulator compare
Atu4159 +0.5 0.8 AsnC family transcriptional regulator compare
Atu4801 +0.5 2.3 NAD-dependent epimerase/dehydratase compare
Atu1499 +0.5 2.1 penicillin binding protein compare
Atu4220 +0.5 1.7 short-chain dehydrogenase compare
Atu0578 +0.5 1.5 FlbT post-transcriptional regulator of flagellin compare
Atu1235 +0.5 2.9 hypothetical protein compare
Atu2320 +0.5 1.5 transcriptional regulator, TetR family compare
Atu0206 +0.5 0.8 hypothetical protein compare
Atu1007 +0.5 1.5 hypothetical protein compare
Atu5449 +0.5 2.1 heat-shock protein compare
Atu4853 +0.5 1.6 hypothetical protein compare
Atu3838 +0.5 2.1 hypothetical protein compare
Atu0460 +0.5 1.8 hypothetical protein compare
Atu6067 +0.5 1.6 conserved hypothetical protein compare
Atu0124 +0.4 1.0 hypothetical protein compare
Atu4831 +0.4 1.8 hypothetical protein compare
Atu1190 +0.4 1.0 hypothetical protein compare
Atu4752 +0.4 2.0 amino acid ABC transporter ATPase/permease compare
Atu3367 +0.4 2.4 TRAP dicarboxylate transporter subunit DctM compare
Atu0467 +0.4 0.8 hypothetical protein compare
Atu0533 +0.4 1.2 putative inhibitor of septum formation compare
Atu1980 +0.4 1.1 hypothetical protein compare
Atu4132 +0.4 1.3 AraC family transcriptional regulator compare
Atu6079 +0.4 2.4 putative nitrilotriacetate monooxygenase compare
Atu5532 +0.4 2.2 ABC transporter membrane spanning protein compare
Atu4795 +0.4 2.7 LuxR family transcriptional regulator compare
Atu4093 +0.4 0.8 hypothetical protein compare
Atu2251 +0.4 1.5 NTP pyrophosphohydrolase, MutT family compare
Atu0972 +0.4 1.5 lipA protein compare
Atu1882 +0.4 1.4 usg protein compare
Atu2354 +0.4 1.6 transcriptional regulator, MarR family compare
Atu5470 +0.4 1.3 hypothetical protein compare
Atu1478 +0.4 1.9 hypothetical protein compare
Atu0231 +0.4 1.6 GMP synthase compare
Atu2273 +0.4 1.2 hypothetical protein compare
Atu2658 +0.4 2.0 GMP synthase - glutamine amidotransferase protein compare
Atu8179 +0.4 1.6 hypothetical protein compare
Atu2680 +0.4 1.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu3077 +0.4 1.8 beta-lactamase compare
Atu4583 +0.4 1.3 superoxide dismutase compare
Atu3415 +0.4 1.2 ABC transporter substrate binding protein compare
Atu3091 +0.4 1.6 hypothetical protein compare
Atu3929 +0.4 2.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms