| | gene | name | fitness | t score | description | |
|---|
| b3493 | pitA | +2.5 | 19.1 | phosphate transporter, low-affinity (NCBI) | compare |
| b3390 | aroK | +2.2 | 6.9 | shikimate kinase I (NCBI) | compare |
| b2814 | metZ | +2.2 | 6.1 | tRNA-Met (NCBI) | compare |
| b0439 | lon | +1.8 | 9.8 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b2830 | nudH | +1.6 | 3.1 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b0014 | dnaK | +1.6 | 3.2 | molecular chaperone DnaK (NCBI) | compare |
| b4480 | hdfR | +1.4 | 9.4 | transcriptional regulator HdfR (NCBI) | compare |
| b2318 | truA | +1.4 | 4.9 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1048 | mdoG | +1.4 | 8.4 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b1847 | yebF | +1.4 | 2.5 | predicted protein (RefSeq) | compare |
| b3261 | fis | +1.4 | 3.6 | DNA-binding protein Fis (NCBI) | compare |
| b0931 | pncB | +1.4 | 6.7 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b0145 | dksA | +1.3 | 4.3 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0051 | ksgA | +1.3 | 6.1 | dimethyladenosine transferase (NCBI) | compare |
| b1049 | mdoH | +1.3 | 9.7 | glucosyltransferase MdoH (NCBI) | compare |
| b3764 | yifE | +1.3 | 6.8 | hypothetical protein (NCBI) | compare |
| b4005 | purD | +1.2 | 9.5 | phosphoribosylamine--glycine ligase (NCBI) | compare |
| b0471 | ybaB | +1.2 | 5.0 | hypothetical protein (NCBI) | compare |
| b0630 | lipB | +1.2 | 2.2 | protein of lipoate biosynthesis (VIMSS) | compare |
| b2312 | purF | +1.2 | 7.3 | amidophosphoribosyltransferase (NCBI) | compare |
| b1709 | btuD | +1.2 | 1.6 | vitamin B12-transporter ATPase (NCBI) | compare |
| b2620 | smpB | +1.2 | 1.3 | SsrA-binding protein (NCBI) | compare |
| b0464 | acrR | +1.1 | 9.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1976 | b1976 | +1.1 | 4.3 | orf, hypothetical protein (VIMSS) | compare |
| b2699 | recA | +1.1 | 1.5 | recombinase A (NCBI) | compare |
| b0523 | purE | +1.1 | 5.4 | phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) | compare |
| b4503 | yafF | +1.0 | 0.9 | no description | compare |
| b3162 | deaD | +1.0 | 5.1 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b3247 | cafA | +1.0 | 8.5 | bundles of cytoplasmic filaments (VIMSS) | compare |
| b2618 | b2618 | +1.0 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b2688 | gshA | +1.0 | 7.4 | glutamate--cysteine ligase (NCBI) | compare |
| b4000 | hupA | +1.0 | 4.2 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b2499 | purM | +1.0 | 5.5 | phosphoribosylaminoimidazole synthetase (NCBI) | compare |
| b2518 | ndk | +1.0 | 3.4 | nucleoside diphosphate kinase (NCBI) | compare |
| b0685 | ybfE | +1.0 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2557 | purL | +1.0 | 7.2 | phosphoribosylformylglycinamidine synthase (NCBI) | compare |
| b0866 | ybjQ | +0.9 | 1.3 | hypothetical protein (NCBI) | compare |
| b3204 | ptsN | +0.9 | 4.9 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b1252 | tonB | +0.9 | 3.1 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b4179 | vacB | +0.9 | 5.4 | putative enzyme (VIMSS) | compare |
| b1942 | fliJ | +0.9 | 1.3 | flagellar biosynthesis chaperone (NCBI) | compare |
| b0828 | iaaA | +0.9 | 4.2 | L-asparaginase (NCBI) | compare |
| b3860 | dsbA | +0.9 | 6.7 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b1685 | ydiH | +0.9 | 1.4 | predicted protein (RefSeq) | compare |
| b2340 | sixA | +0.8 | 3.8 | phosphohistidine phosphatase (NCBI) | compare |
| b1831 | proQ | +0.8 | 3.9 | putative solute/DNA competence effector (NCBI) | compare |
| b1548 | nohA | +0.8 | 2.1 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b3164 | pnp | +0.8 | 2.7 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b4551 | yheV | +0.8 | 2.0 | hypothetical protein (NCBI) | compare |
| b2617 | smpA | +0.8 | 2.9 | small membrane protein A (VIMSS) | compare |
| b4613 | dinQ | +0.8 | 1.9 | Damage inducible, function unknown (RefSeq) | compare |
| b1448 | yncA | +0.8 | 2.1 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2390 | ypeC | +0.8 | 2.4 | hypothetical protein (NCBI) | compare |
| b1358 | ydaT | +0.7 | 0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b1273 | yciN | +0.7 | 1.5 | hypothetical protein (NCBI) | compare |
| b0472 | recR | +0.7 | 4.6 | recombination protein RecR (NCBI) | compare |
| b1632 | rsxE | +0.7 | 3.9 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b1159 | mcrA | +0.7 | 1.0 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b3183 | obgE | +0.7 | 1.1 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b0015 | dnaJ | +0.7 | 5.3 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b3389 | aroB | +0.7 | 5.4 | 3-dehydroquinate synthase (NCBI) | compare |
| b0688 | pgm | +0.7 | 2.6 | phosphoglucomutase (NCBI) | compare |
| b2741 | rpoS | +0.7 | 4.0 | RNA polymerase sigma factor (NCBI) | compare |
| b2512 | yfgL | +0.7 | 4.0 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b4592 | yccB | +0.7 | 1.2 | hypothetical protein (RefSeq) | compare |
| b1882 | cheY | +0.7 | 0.7 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1530 | marR | +0.7 | 3.7 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b1063 | yceB | +0.7 | 2.2 | predicted lipoprotein (NCBI) | compare |
| b2947 | gshB | +0.7 | 3.4 | glutathione synthetase (NCBI) | compare |
| b3005 | exbD | +0.7 | 3.8 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b1400 | paaY | +0.7 | 1.8 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b1357 | ydaS | +0.7 | 1.5 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1139 | lit | +0.7 | 3.1 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b4578 | insP | +0.7 | 1.7 | no description | compare |
| b1628 | rsxB | +0.7 | 1.7 | electron transport complex protein RnfB (NCBI) | compare |
| b1630 | rsxD | +0.7 | 3.7 | electron transport complex protein RnfD (NCBI) | compare |
| b0850 | ybjC | +0.6 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b1185 | dsbB | +0.6 | 1.6 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1109 | ndh | +0.6 | 2.3 | respiratory NADH dehydrogenase 2/cupric reductase (NCBI) | compare |
| b1426 | ydcH | +0.6 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2258 | b2258 | +0.6 | 1.1 | putative transport/receptor protein (VIMSS) | compare |
| b1848 | yebG | +0.6 | 1.3 | conserved protein regulated by LexA (NCBI) | compare |
| b1527 | yneK | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b3465 | yhhF | +0.6 | 3.8 | predicted methyltransferase (NCBI) | compare |
| b3741 | gidA | +0.6 | 2.9 | glucose-inhibited division protein A (NCBI) | compare |
| b2565 | recO | +0.6 | 3.7 | DNA repair protein RecO (NCBI) | compare |
| b0706 | ybfD | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b3119 | tdcR | +0.6 | 1.9 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b4631 | ykgQ | +0.6 | 1.5 | no description | compare |
| b4172 | hfq | +0.6 | 0.5 | RNA-binding protein Hfq (NCBI) | compare |
| b3700 | recF | +0.6 | 4.9 | recombination protein F (NCBI) | compare |
| b3009 | yghB | +0.6 | 3.3 | conserved inner membrane protein (NCBI) | compare |
| b0303 | ykgI | +0.6 | 0.6 | orf, hypothetical protein (VIMSS) | compare |
| b2476 | purC | +0.6 | 2.7 | phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) | compare |
| b1823 | cspC | +0.6 | 1.2 | stress protein, member of the CspA-family (NCBI) | compare |
| b1627 | rsxA | +0.6 | 2.1 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2911 | ssrS | +0.6 | 0.7 | 6S regulatory RNA (NCBI) | compare |
| b1729 | ydjN | +0.6 | 2.6 | predicted transporter (NCBI) | compare |
| b4388 | serB | +0.6 | 2.9 | 3-phosphoserine phosphatase (NCBI) | compare |
| b2892 | recJ | +0.6 | 4.1 | ssDNA exonuclease, 5' --> 3'-specific (NCBI) | compare |
| b1837 | yebW | +0.6 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2421 | cysM | +0.6 | 2.2 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b3871 | bipA | +0.6 | 4.7 | GTP-binding protein (NCBI) | compare |
| b1186 | nhaB | +0.6 | 3.2 | NhaB sodium/proton transporter (Katherine Huang) | compare |
| b3281 | aroE | +0.6 | 4.7 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b1567 | intK | +0.5 | 1.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b1236 | galU | +0.5 | 2.4 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1936 | intG | +0.5 | 0.6 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b1566 | flxA | +0.5 | 1.5 | Qin prophage; predicted protein (NCBI) | compare |
| b3673 | emrD | +0.5 | 4.4 | 2-module integral membrane pump; multidrug resistance (VIMSS) | compare |
| b4387 | ytjB | +0.5 | 3.2 | hypothetical protein (NCBI) | compare |
| b1361 | ydaW | +0.5 | 0.4 | orf, hypothetical protein (VIMSS) | compare |
| b1951 | rcsA | +0.5 | 0.8 | DNA-binding transcriptional activator, co-regulator with RcsB (NCBI) | compare |
| b4101 | phnG | +0.5 | 1.9 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1079 | flgH | +0.5 | 2.7 | flagellar L-ring protein precursor H (NCBI) | compare |
| b2414 | cysK | +0.5 | 3.4 | cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) | compare |
| b3341 | rpsG | +0.5 | 0.8 | 30S ribosomal protein S7 (NCBI) | compare |
| b0746 | valZ | +0.5 | 1.6 | tRNA-Val (NCBI) | compare |
| b4041 | plsB | +0.5 | 1.4 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b1153 | ymfQ | +0.5 | 2.5 | e14 prophage; conserved protein (NCBI) | compare |
| b0065 | yabI | +0.5 | 2.7 | conserved inner membrane protein (NCBI) | compare |
| b1766 | sppA | +0.5 | 3.4 | protease IV (signal peptide peptidase) (NCBI) | conserved |
| b4294 | insA-7 | +0.5 | 1.7 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b2684 | mprA | +0.5 | 2.1 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b2570 | rseC | +0.5 | 2.4 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b0888 | trxB | +0.5 | 1.9 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b3006 | exbB | +0.5 | 2.9 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b4595 | yciY | +0.5 | 1.1 | hypothetical protein (RefSeq) | compare |
| b4533 | ynfO | +0.5 | 1.3 | Qin prophage; predicted protein (NCBI) | compare |
| b1148 | ymfM | +0.5 | 1.5 | e14 prophage; predicted protein (NCBI) | compare |
| b2004 | yeeU | +0.5 | 1.8 | CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b0527 | ybcI | +0.5 | 2.0 | conserved inner membrane protein (NCBI) | compare |
| b2582 | trxC | +0.5 | 1.0 | thioredoxin 2 (NCBI) | compare |
| b1572 | ydfB | +0.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2946 | yggJ | +0.5 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b4191 | ulaR | +0.5 | 2.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1158 | pin | +0.5 | 2.7 | e14 prophage; site-specific DNA recombinase (NCBI) | compare |
| b4195 | ulaC | +0.5 | 1.6 | L-ascorbate-specific enzyme IIA component of PTS (NCBI) | compare |
| b1629 | rsxC | +0.5 | 3.4 | electron transport complex protein RnfC (NCBI) | compare |
| b4698 | mgrR | +0.5 | 1.7 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b3753 | rbsR | +0.5 | 4.0 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b1533 | ydeD | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4233 | mpl | +0.5 | 3.8 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) | compare |
| b0623 | cspE | +0.5 | 1.1 | cold shock protein E (NCBI) | compare |
| b3194 | yrbE | +0.5 | 3.6 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1594 | dgsA | +0.5 | 1.8 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4139 | aspA | +0.5 | 3.4 | aspartate ammonia-lyase (aspartase) (VIMSS) | compare |
| b0955 | ycbZ | +0.5 | 3.4 | predicted peptidase (NCBI) | compare |
| b3062 | ttdB | +0.5 | 2.2 | L(+)-tartrate dehydratase (NCBI) | compare |
| b0468 | ybaN | +0.5 | 2.5 | conserved inner membrane protein (NCBI) | compare |
| b4646 | yrdE | +0.5 | 1.8 | no description | compare |
| b1462 | b1462 | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3822 | recQ | +0.5 | 3.7 | ATP-dependent DNA helicase (NCBI) | compare |
| b1573 | ydfC | +0.5 | 0.8 | Qin prophage; predicted protein (RefSeq) | compare |
| b0216 | aspV | +0.5 | 2.4 | tRNA-Asp (NCBI) | compare |
| b1362 | rzpR | +0.5 | 1.2 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b0585 | fes | +0.5 | 2.8 | enterobactin/ferric enterobactin esterase (NCBI) | compare |
| b2092 | gatC | +0.5 | 2.3 | galactitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b0643 | ybeL | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b0989 | cspH | +0.5 | 0.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b0583 | entD | +0.5 | 2.3 | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex (NCBI) | compare |
| b0440 | hupB | +0.4 | 2.0 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b4381 | deoC | +0.4 | 2.3 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b0882 | clpA | +0.4 | 3.2 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b0191 | yaeJ | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b1651 | gloA | +0.4 | 1.6 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b3195 | yrbF | +0.4 | 3.4 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1151 | ymfO | +0.4 | 1.3 | e14 prophage; conserved protein (RefSeq) | compare |
| b1147 | ymfL | +0.4 | 1.1 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1020 | phoH | +0.4 | 2.6 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b2659 | b2659 | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1171 | b1171 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b2953 | yggU | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b3133 | agaV | +0.4 | 1.5 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b4648 | ysaC | +0.4 | 1.5 | no description | compare |
| b0976 | hyaE | +0.4 | 1.8 | protein involved in processing of HyaA and HyaB proteins (NCBI) | compare |
| b2085 | b2085 | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1675 | ydhZ | +0.4 | 1.9 | hypothetical protein (NCBI) | compare |
| b0249 | ykfF | +0.4 | 1.3 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b3775 | ppiC | +0.4 | 1.9 | peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI) | compare |
| b4520 | ymgF | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b2918 | argK | +0.4 | 1.9 | arginine/ornithine transport system ATPase (NCBI) | compare |
| b1754 | b1754 | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b3781 | trxA | +0.4 | 1.3 | thioredoxin 1 (VIMSS) | compare |
| b1486 | ddpB | +0.4 | 0.8 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b4394 | yjjX | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3289 | rsmB | +0.4 | 3.2 | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | compare |
| b1731 | cedA | +0.4 | 1.3 | cell division modulator (RefSeq) | compare |
| b2346 | vacJ | +0.4 | 2.4 | predicted lipoprotein (NCBI) | compare |
| b3205 | yhbJ | +0.4 | 1.8 | hypothetical protein (NCBI) | compare |
| b2366 | dsdA | +0.4 | 1.7 | D-serine dehydratase (NCBI) | compare |
| b3448 | yhhA | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b1157 | stfE | +0.4 | 2.1 | no description | compare |
| b4203 | rplI | +0.4 | 1.8 | 50S ribosomal protein L9 (NCBI) | compare |
| b3582 | sgbU | +0.4 | 1.6 | probable 3-hexulose-6-phosphate isomerase (VIMSS) | compare |
| b3497 | yhiQ | +0.4 | 2.6 | predicted SAM-dependent methyltransferase (NCBI) | compare |
| b4383 | deoB | +0.4 | 2.6 | phosphopentomutase (NCBI) | compare |
| b2189 | proL | +0.4 | 0.9 | tRNA-Pro (NCBI) | compare |
| b0435 | bolA | +0.4 | 2.0 | possible regulator of murein genes (VIMSS) | compare |
| b0346 | mhpR | +0.4 | 1.6 | DNA-binding transcriptional activator, 3HPP-binding (RefSeq) | compare |