Experiment set12IT027 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PP_4364 -8.2 -5.7 putative Anti-sigma F factor antagonist compare
PP_3511 -7.3 -8.7 Branched-chain-amino-acid aminotransferase compare
PP_5014 -6.6 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_4679 -6.6 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3484 -6.5 -7.8 Response regulator receiver protein compare
PP_0164 -6.3 -7.5 conserved protein of unknown function compare
PP_1985 -6.3 -8.6 3-isopropylmalate dehydratase large subunit compare
PP_5098 -6.1 -10.2 methionine biosynthesis protein MetW compare
PP_0422 -5.9 -6.1 Indole-3-glycerol phosphate synthase compare
PP_0966 -5.9 -14.8 Histidinol dehydrogenase compare
PP_0293 -5.9 -4.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -5.8 -18.2 Ketol-acid reductoisomerase compare
PP_1988 -5.8 -12.4 3-isopropylmalate dehydrogenase compare
PP_5015 -5.7 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1995 -5.6 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1231 -5.6 -8.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4680 -5.5 -18.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -5.4 -8.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4723 -5.4 -13.1 Carbamoyl-phosphate synthase large chain compare
PP_0083 -5.4 -3.7 tryptophan synthase beta chain compare
PP_0421 -5.3 -8.6 Anthranilate phosphoribosyltransferase compare
PP_1079 -5.3 -8.1 Ornithine carbamoyltransferase compare
PP_0417 -5.3 -18.5 Anthranilate synthase component 1 compare
PP_5097 -5.3 -16.6 homoserine O-acetyltransferase compare
PP_0289 -5.2 -10.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0787 -5.2 -6.1 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5289 -5.2 -6.2 Acetylglutamate kinase compare
PP_0082 -5.1 -3.5 tryptophan synthase alpha chain compare
PP_2371 -5.0 -9.5 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -5.0 -9.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 -5.0 -8.4 Carbamoyl-phosphate synthase small chain compare
PP_1088 -4.9 -11.9 Argininosuccinate synthase compare
PP_2327 -4.9 -8.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0691 -4.7 -6.5 Glutamate 5-kinase compare
PP_0290 -4.7 -8.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5095 -4.7 -3.2 pyrroline-5-carboxylate reductase compare
PP_4799 -4.6 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5346 -4.6 -11.2 pyruvate carboxylase subunit B compare
PP_0965 -4.6 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0967 -4.6 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4999 -4.6 -3.1 dihydroorotase-like protein compare
PP_0292 -4.6 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2001 -4.5 -9.5 O-succinylhomoserine sulfhydrylase compare
PP_0339 -4.5 -4.3 Pyruvate dehydrogenase E1 component compare
PP_5347 -4.4 -13.7 pyruvate carboxylase subunit A compare
PP_2168 -4.4 -12.4 Transaldolase compare
PP_5128 -4.4 -6.6 Dihydroxy-acid dehydratase compare
PP_0420 -4.3 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4890 -4.3 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4909 -4.3 -9.4 phosphoserine phosphatase compare
PP_2370 -4.3 -5.0 conserved protein of unknown function compare
PP_5155 -4.0 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -3.8 -4.5 Nitrogen regulation protein NR(I) compare
PP_0184 -3.7 -7.5 Argininosuccinate lyase compare
PP_0735 -3.6 -2.6 molybdopterin-synthase adenylyltransferase compare
PP_5348 -3.6 -10.7 Transcriptional regulator, LysR family compare
PP_1986 -3.4 -5.0 3-isopropylmalate dehydratase small subunit compare
PP_2388 -3.3 -6.5 Transporter, LysE family compare
PP_4699 -3.2 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1025 -3.1 -8.5 2-isopropylmalate synthase compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_5303 -3.0 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0846 -2.9 -2.7 DnaK-like molecular chaperone specific for IscU compare
PP_0362 -2.8 -10.0 Biotin synthase compare
PP_0291 -2.7 -2.6 conserved protein of unknown function compare
PP_0366 -2.5 -8.8 dethiobiotin synthetase compare
PP_1233 -2.5 -7.4 sulfurtransferase compare
PP_4126 -2.5 -2.4 NADH-quinone oxidoreductase subunit I compare
PP_0363 -2.5 -11.8 8-amino-7-oxononanoate synthase compare
PP_4120 -2.4 -5.0 NADH-quinone oxidoreductase subunit B compare
PP_4984 -2.4 -11.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4129 -2.3 -5.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2414 -2.3 -1.9 conserved exported protein of unknown function compare
PP_2390 -2.2 -8.4 Transcriptional regulator, LysR family compare
PP_5104 -2.2 -9.0 thiazole synthase compare
PP_1022 -2.1 -4.7 glucose 6-phosphate-1-dehydrogenase compare
PP_2328 -2.0 -6.1 Phosphoadenosine phosphosulfate reductase compare
PP_0365 -2.0 -9.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0364 -1.8 -7.4 pimeloyl-[acp] methyl ester esterase compare
PP_4782 -1.8 -4.8 Phosphomethylpyrimidine kinase compare
PP_4121 -1.7 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PP_5039 -1.7 -3.2 conserved protein of unknown function compare
PP_0065 -1.6 -3.0 NAD-binding component of TrK potassium transporter compare
PP_1493 -1.6 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1362 -1.5 -4.3 pyruvate kinase II compare
PP_4130 -1.5 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5217 -1.5 -11.1 Polyphosphate kinase compare
PP_4726 -1.4 -2.6 Chaperone protein DnaJ compare
PP_1216 -1.4 -1.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2336 -1.4 -2.8 aconitate hydratase 1 compare
PP_0406 -1.4 -6.3 Nucleotidyltransferase family protein compare
PP_1999 -1.4 -2.5 membrane protein required for colicin V production compare
PP_1912 -1.4 -4.6 Phosphate acyltransferase compare
PP_1468 -1.4 -1.5 Tyrosine recombinase XerD compare
PP_1426 -1.4 -8.4 L-aspartate oxidase compare
PP_0833 -1.4 -1.3 queuine tRNA-ribosyltransferase compare
PP_1733 -1.4 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1629 -1.4 -4.3 Protein RecA compare
PP_4131 -1.3 -5.5 NADH-quinone oxidoreductase subunit N compare
PP_5350 -1.3 -2.5 Transcriptional regulator, RpiR family compare
PP_4922 -1.3 -7.8 Phosphomethylpyrimidine synthase compare
PP_2378 -1.3 -2.5 Fe/S biogenesis protein NfuA compare
PP_1348 -1.3 -4.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2737 -1.3 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1654 -1.3 -3.2 cysteine synthase B compare
PP_0393 -1.2 -2.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3790 -1.2 -6.9 diaminopimelate epimerase compare
PP_1783 -1.2 -1.1 dTDP-glucose pyrophosphorylase compare
PP_1353 -1.2 -0.8 conserved membrane protein of unknown function compare
PP_5114 -1.2 -1.5 putative adenine methyltransferase compare
PP_4993 -1.2 -2.9 Glutathione synthetase compare
PP_0435 -1.2 -6.9 Peptidase, M23/M37 family compare
PP_1176 -1.2 -2.2 conserved protein of unknown function compare
PP_4340 -1.1 -4.6 response regulator for chemotactic signal transduction compare
PP_1217 -1.1 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4943 -1.1 -1.8 putative Glycosyl transferase compare
PP_2000 -1.1 -1.7 amidophosphoribosyl transferase compare
PP_3248 -1.1 -1.7 Dyp-type peroxidase family protein compare
PP_5748 -1.1 -2.4 cytochrome c heme lyase subunit compare
PP_3037 -1.1 -1.9 C4-type zinc finger protein, DksA/TraR family compare
PP_0547 -1.1 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1679 -1.1 -1.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0001 -1.1 -1.1 probable chromosome-partitioning protein compare
PP_1011 -1.1 -6.3 glucokinase compare
PP_2307 -1.0 -3.4 conserved protein of unknown function compare
PP_1237 -1.0 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1664 -1.0 -3.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4695 -1.0 -5.1 Sensory box histidine kinase compare
PP_4338 -1.0 -5.5 Chemotaxis histidine kinase CheA compare
PP_3409 -1.0 -2.7 putative Cobalamin biosynthesis protein cobE compare
PP_3286 -1.0 -4.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2302 -1.0 -3.3 DNA-binding, ATP-dependent protease compare
PP_1994 -1.0 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_1764 -1.0 -4.0 Phosphoglycolate phosphatase 2 compare
PP_4701 -0.9 -1.2 glucose-6-phosphate isomerase compare
PP_1018 -0.9 -4.8 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_5028 -0.9 -2.0 proline iminopeptidase compare
PP_3580 -0.9 -2.7 conserved protein of unknown function compare
PP_4480 -0.9 -5.5 arginine N-succinyltransferase, subunit alpha compare
PP_5582 -0.9 -1.5 conserved protein of unknown function compare
PP_1826 -0.9 -1.6 Hydrolase, isochorismatase family compare
PP_0880 -0.9 -3.9 dipeptide ABC transporter - putative membrane subunit compare
PP_2403 -0.9 -1.9 Chemotaxis protein CheY compare
PP_3908 -0.9 -2.8 conserved protein of unknown function compare
PP_2145 -0.9 -3.9 beta-N-acetylglucosaminidase compare
PP_0218 -0.9 -5.2 Sensory box protein compare
PP_3417 -0.9 -3.3 D-gluconate transporter compare
PP_4122 -0.9 -1.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4045 -0.9 -1.9 conserved protein of unknown function compare
PP_0834 -0.9 -1.1 Sec translocation complex subunit YajC compare
PP_5310 -0.8 -3.3 junction-specific ATP-dependent DNA helicase compare
PP_2087 -0.8 -1.8 CmpX protein compare
PP_5203 -0.8 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_1439 -0.8 -1.4 conserved exported protein of unknown function compare
PP_2903 -0.8 -1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1355 -0.8 -7.1 Muropeptide permease AmpG compare
PP_1326 -0.8 -2.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0434 -0.8 -6.5 Anhydro-N-acetylmuramic acid kinase compare
PP_1016 -0.8 -4.5 mannose/glucose ABC transporter, permease protein conserved
PP_2499 -0.8 -1.0 conserved protein of unknown function compare
PP_1012 -0.8 -3.4 DNA-binding response regulator compare
PP_3312 -0.8 -1.3 putative Heat shock protein compare
PP_4874 -0.8 -0.5 50S ribosomal protein L9 compare
PP_4214 -0.8 -2.0 pyoverdine biosynthesis related protein compare
PP_1215 -0.8 -0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_2503 -0.8 -3.1 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_1734 -0.8 -1.8 Probable septum site-determining protein MinC compare
PP_1009 -0.8 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4880 -0.8 -4.4 exoribonuclease R compare
PP_5216 -0.8 -1.3 exopolyphosphatase compare
PP_0035 -0.8 -1.7 putative bactoprenol-linked glycose transferase compare
PP_3821 -0.7 -3.5 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4988 -0.7 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4267 -0.7 -3.0 Recombination protein RecR compare
PP_0513 -0.7 -1.7 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1269 -0.7 -1.1 Universal stress protein family compare
PP_1876 -0.7 -3.2 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1678 -0.7 -2.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1017 -0.7 -4.6 mannose/glucose ABC transporter, permease protein conserved
PP_5328 -0.7 -2.1 putative phosphate transport system permease protein compare
PP_2402 -0.7 -1.2 putative Sensor histidine kinase compare
PP_4337 -0.7 -3.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1676 -0.7 -2.8 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4379 -0.7 -3.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0405 -0.7 -5.8 conserved protein of unknown function compare
PP_3506 -0.7 -2.2 Magnesium chelatase, subunit ChII compare
PP_3359 -0.7 -1.7 putative Hydroxycinnamic acid degradation regulator compare
PP_4004 -0.7 -1.7 DNA translocase FtsK compare
PP_5352 -0.7 -4.2 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0378 -0.7 -4.0 Pyrroloquinoline-quinone synthase compare
PP_4871 -0.7 -2.2 putative lysine decarboxylase family protein compare
PP_5279 -0.7 -1.7 conserved protein of unknown function compare
PP_4804 -0.7 -1.9 RlpA-like lipoprotein compare
PP_1015 -0.6 -3.5 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_3789 -0.6 -3.9 putative Efflux transporter compare
PP_4787 -0.6 -1.1 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0381 -0.6 -3.4 Coenzyme PQQ synthesis protein F compare
PP_2908 -0.6 -2.1 DNA-binding transcriptional repressor compare
PP_3035 -0.6 -1.0 conserved protein of unknown function compare
PP_4362 -0.6 -2.1 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms