Experiment set12IT027 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +1.7 16.8 Sensor protein GacS compare
PP_4099 +1.7 16.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4171 +1.3 10.7 conserved exported protein of unknown function compare
PP_2387 +1.1 3.8 conserved protein of unknown function compare
PP_1623 +1.0 7.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_4373 +1.0 7.9 Transcriptional regulator FleQ compare
PP_3539 +1.0 4.5 putative Transcriptional regulator compare
PP_4561 +1.0 1.4 stress response protein compare
PP_5053 +1.0 3.9 Protein-export protein SecB compare
PP_0566 +0.9 1.7 translation-related factor compare
PP_1142 +0.9 1.8 conserved protein of unknown function compare
PP_1113 +0.8 7.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5201 +0.8 1.8 conserved protein of unknown function, UPF0149 family compare
PP_0232 +0.8 1.6 ATP-binding taurine transporter subunit compare
PP_0805 +0.8 6.6 Outer membrane efflux protein compare
PP_5393 +0.8 2.0 putative metal-binding chaperone compare
PP_3241 +0.8 1.6 conserved exported protein of unknown function compare
PP_4268 +0.8 1.0 nucleoid-associated broad specificity regulator compare
PP_3392 +0.8 2.6 conserved protein of unknown function compare
PP_1528 +0.8 1.9 conserved protein of unknown function compare
PP_5232 +0.8 2.5 conserved protein of unknown function compare
PP_2581 +0.7 1.9 conserved protein of unknown function compare
PP_1513 +0.7 2.5 Ribosomal RNA small subunit methyltransferase J compare
PP_4895 +0.7 1.7 tRNA dimethylallyltransferase compare
PP_0806 +0.7 6.7 putative Surface adhesion protein compare
PP_5541 +0.7 3.6 conserved protein of unknown function compare
PP_2889 +0.7 3.7 putative Transmembrane regulator PrtR compare
PP_1683 +0.7 2.6 Transcriptional regulator, MarR family compare
PP_4994 +0.7 3.6 conserved protein of unknown function compare
PP_1445 +0.7 4.3 carbohydrate-selective porin compare
PP_0804 +0.6 4.4 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_5240 +0.6 1.8 Response regulator compare
PP_0048 +0.6 1.4 conserved protein of unknown function compare
PP_5640 +0.6 2.1 conserved protein of unknown function compare
PP_2575 +0.6 1.4 conserved exported protein of unknown function compare
PP_0627 +0.6 1.9 conserved protein of unknown function compare
PP_4136 +0.6 1.2 Transcriptional regulator, LuxR family compare
PP_2413 +0.6 4.8 GGDEF family protein compare
PP_0574 +0.6 4.7 DNA-binding response regulator, LuxR family compare
PP_0803 +0.6 4.4 Protein secretion ABC efflux system, membrane fusion protein compare
PP_2530 +0.6 1.9 conserved protein of unknown function compare
PP_4952 +0.6 1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1124 +0.6 2.0 conserved membrane protein of unknown function compare
PP_2883 +0.5 1.1 conserved protein of unknown function compare
PP_5706 +0.5 1.3 Sec translocation complex - SecG subunit compare
PP_1632 +0.5 1.6 conserved protein of unknown function compare
PP_4173 +0.5 3.6 Sensor histidine kinase/response regulator compare
PP_1503 +0.5 1.7 conserved protein of unknown function compare
PP_4172 +0.5 2.5 conserved exported protein of unknown function compare
PP_0916 +0.5 1.8 Amino acid transporter LysE compare
PP_0958 +0.5 2.7 phospholipid ABC transporter ATP-binding subunit compare
PP_1096 +0.5 1.8 putative electron transport complex protein compare
PP_2055 +0.5 2.6 putative isomerase compare
PP_2060 +0.5 1.7 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4942 +0.5 1.6 conserved protein of unknown function compare
PP_1898 +0.5 1.7 MotA/TolQ/ExbB proton channel family protein compare
PP_2360 +0.5 2.7 putative type 1 pili subunit CsuA/B protein compare
PP_4797 +0.5 1.6 conserved protein of unknown function compare
PP_5223 +0.5 1.9 regulator of nucleotide diphosphokinase compare
PP_1535 +0.5 1.9 putative Methyltransferase compare
PP_2765 +0.5 1.1 putative Sulfonate monooxygenase MsuD compare
PP_2631 +0.5 1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5689 +0.5 1.7 conserved protein of unknown function compare
PP_2972 +0.5 0.9 conserved protein of unknown function compare
PP_3685 +0.5 2.1 conserved protein of unknown function compare
PP_1112 +0.5 3.1 conserved membrane protein of unknown function compare
PP_5469 +0.5 2.4 putative SAM-dependent methyltransferase compare
PP_4073 +0.5 1.7 conserved exported protein of unknown function compare
PP_5084 +0.5 3.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0948 +0.5 1.7 Phosphocarrier protein HPr compare
PP_4768 +0.4 1.4 Exonuclease compare
PP_5441 +0.4 1.3 protein of unknown function compare
PP_1044 +0.4 2.2 Lipoprotein UxpA compare
PP_0549 +0.4 1.7 putative Lipoprotein compare
PP_3766 +0.4 1.1 Lactoylglutathione lyase compare
PP_5007 +0.4 0.9 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1428 +0.4 0.6 Sigma factor AlgU negative regulatory protein compare
PP_1020 +0.4 2.1 putative glucose-6-phosphate 1-epimerase compare
PP_4642 +0.4 0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_2217 +0.4 1.9 enoyl-CoA hydratase compare
PP_4785 +0.4 2.6 conserved exported protein of unknown function compare
PP_5569 +0.4 1.9 protein of unknown function of phage origin compare
PP_1109 +0.4 3.3 Transcriptional regulator, GntR family compare
PP_5322 +0.4 2.3 putative metal ion transporter compare
PP_5724 +0.4 2.3 conserved protein of unknown function compare
PP_3519 +0.4 0.8 putative Lipoprotein compare
PP_1763 +0.4 1.6 putative oxidoreductase compare
PP_4710 +0.4 2.9 tRNA pseudouridine 55 synthase compare
PP_1083 +0.4 2.3 (2Fe-2S)-binding protein compare
PP_0355 +0.4 1.5 Response regulator compare
PP_1007 +0.4 2.5 putative Transmembrane sensor compare
PP_3831 +0.4 1.8 conserved protein of unknown function compare
PP_4980 +0.4 1.9 ATP-dependent RNA helicase compare
PP_1384 +0.4 2.5 Probable efflux pump outer membrane protein TtgC compare
PP_1454 +0.4 2.1 conserved protein of unknown function compare
PP_5711 +0.4 1.5 protein of unknown function compare
PP_4223 +0.4 1.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1742 +0.4 1.1 conserved inner membrane protein of unknown function compare
PP_1187 +0.4 1.5 sensor protein compare
PP_1095 +0.4 2.4 putative electron transport complex protein compare
PP_5052 +0.4 1.3 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_3337 +0.4 2.3 conserved membrane protein of unknown function compare
PP_3083 +0.4 2.1 putative Membrane protein compare
PP_3802 +0.4 1.6 putative Cation ABC transporter, ATP-binding protein compare
PP_4108 +0.4 2.2 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_4406 +0.4 1.2 conserved protein of unknown function compare
PP_1813 +0.4 1.9 ComEA-related protein compare
PP_5270 +0.4 2.1 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4199 +0.4 0.8 putative Lipoprotein compare
PP_0276 +0.4 0.7 Transcriptional regulator, Cro/CI family compare
PP_2435 +0.4 1.8 cysteine desulfurase compare
PP_4205 +0.4 2.5 mRNA interferase MqsR of the MqsA-MqsR antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2107 +0.4 1.1 conserved protein of unknown function compare
PP_4262 +0.4 1.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0349 +0.4 2.2 putative Membrane protein compare
PP_1554 +0.4 1.8 conserved protein of unknown function compare
PP_5145 +0.4 3.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4328 +0.4 2.1 conserved protein of unknown function compare
PP_1774 +0.4 1.4 conserved exported protein of unknown function compare
PP_3401 +0.4 0.9 conserved protein of unknown function compare
PP_3707 +0.4 2.0 conserved protein of unknown function compare
PP_1836 +0.4 1.8 putative metal transporter, ZIP family compare
PP_2437 +0.4 2.7 putative Acyl-CoA dehydrogenase compare
PP_0214 +0.4 2.1 4-aminobutyrate aminotransferase compare
PP_4662 +0.4 1.2 conserved protein of unknown function compare
PP_4944 +0.4 1.4 Carbamoyltransferase compare
PP_5586 +0.4 2.0 exported protein of unknown function compare
PP_2090 +0.4 1.0 Uroporphyrinogen-III C-methyltransferase compare
PP_1512 +0.4 1.7 conserved protein of unknown function compare
PP_4582 +0.4 1.5 conserved membrane protein of unknown function compare
PP_2860 +0.4 2.1 putative Nicotinamide mononucleotide transporter compare
PP_1204 +0.4 1.9 putative Lipoprotein compare
PP_5256 +0.4 1.5 Cyclic nucleotide-binding protein compare
PP_1255 +0.4 1.4 putative cis-4-hydroxy-D-proline oxidase compare
PP_2257 +0.4 2.8 putative aerotaxis receptor compare
PP_1093 +0.4 2.7 putative electron transport complex protein compare
PP_3018 +0.4 2.1 conserved protein of unknown function compare
PP_1736 +0.4 1.6 conserved protein of unknown function compare
PP_0963 +0.4 1.6 putative BolA family protein compare
PP_2062 +0.4 1.7 conserved protein of unknown function compare
PP_5659 +0.4 1.2 protein of unknown function compare
PP_1522 +0.4 1.3 major cold shock protein compare
PP_4577 +0.3 1.9 UPF0271 protein PP_4577 compare
PP_1756 +0.3 1.6 conserved exported protein of unknown function compare
PP_3244 +0.3 2.1 Magnesium transporter, MgtC family compare
PP_0598 +0.3 2.6 paraquat-inducible protein A compare
PP_1511 +0.3 1.9 conserved protein of unknown function compare
PP_4418 +0.3 1.6 conserved protein of unknown function compare
PP_4156 +0.3 0.6 Transcriptional regulator, LysR family compare
PP_0254 +0.3 1.4 conserved protein of unknown function compare
PP_0238 +0.3 1.5 alkanesulfonate monooxygenase compare
PP_2341 +0.3 0.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5032 +0.3 2.1 Histidine ammonia-lyase compare
PP_2722 +0.3 1.5 conserved protein of unknown function compare
PP_5337 +0.3 1.7 LysR family transcriptional regulator compare
PP_2814 +0.3 1.8 conserved protein of unknown function compare
PP_5055 +0.3 1.0 Sulfurtransferase compare
PP_3040 +0.3 1.5 Pyocin R2_PP, holin compare
PP_1459 +0.3 1.6 CBS domain protein compare
PP_4273 +0.3 0.5 Transcriptional regulator, MerR family compare
PP_2878 +0.3 1.0 conserved protein of unknown function compare
PP_5085 +0.3 1.5 malic enzyme B compare
PP_3411 +0.3 0.9 conserved protein of unknown function compare
PP_4005 +0.3 1.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_1279 +0.3 2.2 Probable alginate O-acetylase AlgJ compare
PP_3127 +0.3 2.0 putative Exopolysaccharide transport protein compare
PP_0972 +0.3 0.7 UPF0213 protein PP_0972 compare
PP_2272 +0.3 1.8 conserved protein of unknown function compare
PP_2949 +0.3 2.0 putative permease compare
PP_0893 +0.3 1.3 ThiJ/PfpI family protein compare
PP_0683 +0.3 1.2 conserved protein of unknown function compare
PP_3239 +0.3 1.3 putative cointegrate resolution protein T Tn4652 compare
PP_4982 +0.3 1.6 putative cytochrome b561, iron-regulated compare
PP_0711 +0.3 0.9 putative hydrolase compare
PP_0304 +0.3 1.8 Carnitine uptake ABC transporter, periplasmic component compare
PP_2163 +0.3 1.7 VacJ lipoprotein compare
PP_2900 +0.3 1.4 conserved protein of unknown function compare
PP_3938 +0.3 0.9 conserved protein of unknown function compare
PP_2580 +0.3 1.1 conserved protein of unknown function compare
PP_2759 +0.3 1.7 ribose ABC transporter - ATP-binding subunit compare
PP_2186 +0.3 1.6 putative Formate dehydrogenase, delta subunit compare
PP_1808 +0.3 0.9 glucose-6-phosphate isomerase compare
PP_1663 +0.3 2.1 conserved exported protein of unknown function compare
PP_5619 +0.3 1.5 protein of unknown function compare
PP_4625 +0.3 1.4 anti-holin regulator of holin CidA compare
PP_4907 +0.3 1.7 Thiosulfate sulfurtransferase compare
PP_3761 +0.3 2.7 Sensor histidine kinase/response regulator compare
PP_3942 +0.3 1.7 maleate isomerase compare
PP_0719 +0.3 0.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4957 +0.3 1.2 conserved protein of unknown function compare
PP_2887 +0.3 1.8 Catalase-related peroxidase compare
PP_0269 +0.3 1.8 putative Glutamate synthase, large subunit compare
PP_0685 +0.3 1.3 conserved protein of unknown function compare
PP_1041 +0.3 0.6 twin arginine protein export complex subunit compare
PP_0003 +0.3 1.0 16S RNA methyltransferase compare
PP_5284 +0.3 2.0 UPF0758 protein PP_5284 compare
PP_0832 +0.3 1.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3258 +0.3 0.9 conserved protein of unknown function compare
PP_2931 +0.3 0.9 conserved protein of unknown function compare
PP_0425 +0.3 0.9 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms