Experiment set12IT026 for Pseudomonas putida KT2440

Compare to:

Ferulic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4364 -8.0 -5.6 putative Anti-sigma F factor antagonist compare
PP_1985 -7.8 -5.4 3-isopropylmalate dehydratase large subunit compare
PP_3511 -7.3 -8.7 Branched-chain-amino-acid aminotransferase compare
PP_5097 -7.2 -9.9 homoserine O-acetyltransferase compare
PP_3951 -7.2 -7.0 3-oxoadipate CoA-transferase subunit A compare
PP_0967 -7.2 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -7.2 -12.0 Ketol-acid reductoisomerase compare
PP_1988 -7.1 -9.8 3-isopropylmalate dehydrogenase compare
PP_4680 -7.1 -10.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -6.9 -10.6 O-succinylhomoserine sulfhydrylase compare
PP_3952 -6.8 -10.4 3-oxoadipate CoA-transferase subunit A conserved
PP_0420 -6.8 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4679 -6.7 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0164 -6.7 -4.6 conserved protein of unknown function compare
PP_0417 -6.6 -19.6 Anthranilate synthase component 1 compare
PP_1986 -6.6 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_0966 -6.5 -12.5 Histidinol dehydrogenase compare
PP_1377 -6.5 -8.9 beta-ketoadipyl-CoA thiolase conserved
PP_5014 -6.5 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0290 -6.4 -4.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2168 -6.4 -9.8 Transaldolase compare
PP_4724 -6.4 -4.4 Carbamoyl-phosphate synthase small chain compare
PP_1079 -6.3 -6.2 Ornithine carbamoyltransferase compare
PP_5185 -6.3 -4.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1379 -6.0 -9.2 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_4723 -6.0 -8.2 Carbamoyl-phosphate synthase large chain compare
PP_0422 -5.8 -7.0 Indole-3-glycerol phosphate synthase compare
PP_1995 -5.8 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -5.8 -7.9 Argininosuccinate synthase compare
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5098 -5.7 -11.0 methionine biosynthesis protein MetW compare
PP_1380 -5.7 -8.5 3-oxoadipate enol-lactonase 2 conserved
PP_4909 -5.6 -9.4 phosphoserine phosphatase compare
PP_2371 -5.6 -9.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0787 -5.5 -5.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0421 -5.5 -10.2 Anthranilate phosphoribosyltransferase compare
PP_1375 -5.4 -16.3 transcription regulatory protein (pca regulon) compare
PP_1381 -5.4 -2.3 4-carboxymuconolactone decarboxylase compare
PP_1231 -5.3 -8.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0965 -5.3 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3736 -5.2 -13.2 vanillate O-demethylase oxygenase subunit conserved
PP_5289 -5.2 -6.2 Acetylglutamate kinase compare
PP_0289 -5.1 -10.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4656 -5.1 -10.1 protocatechuate 3,4-dioxygenase beta chain compare
PP_2327 -5.0 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5015 -5.0 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0083 -5.0 -4.9 tryptophan synthase beta chain compare
PP_0082 -5.0 -3.4 tryptophan synthase alpha chain compare
PP_4655 -4.9 -10.4 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_5155 -4.9 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_3999 -4.8 -9.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2388 -4.5 -4.1 Transporter, LysE family compare
PP_0691 -4.5 -6.1 Glutamate 5-kinase compare
PP_5095 -4.5 -3.1 pyrroline-5-carboxylate reductase compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1654 -4.5 -3.1 cysteine synthase B compare
PP_1713 -4.5 -3.7 Transcriptional regulator PcaQ compare
PP_3737 -4.4 -10.5 vanillate O-demethylase oxidoreductase conserved
PP_4890 -4.4 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_4999 -4.4 -3.0 dihydroorotase-like protein compare
PP_0356 -4.3 -9.3 malate synthase G compare
PP_5128 -4.3 -7.3 Dihydroxy-acid dehydratase compare
PP_1616 -4.3 -11.9 formaldehyde dehydrogenase, glutathione-dependent conserved
PP_0406 -4.1 -5.9 Nucleotidyltransferase family protein compare
PP_1025 -3.9 -11.3 2-isopropylmalate synthase compare
PP_2390 -3.8 -8.8 Transcriptional regulator, LysR family compare
PP_4696 -3.8 -3.7 Nitrogen regulation protein NR(I) compare
PP_1826 -3.7 -5.0 Hydrolase, isochorismatase family compare
PP_3590 -3.6 -7.1 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3357 -3.6 -8.4 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) compare
PP_5303 -3.5 -7.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0292 -3.5 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3356 -3.3 -16.1 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) compare
PP_2328 -3.3 -10.0 Phosphoadenosine phosphosulfate reductase compare
PP_0291 -3.2 -3.2 conserved protein of unknown function compare
PP_1355 -3.0 -19.7 Muropeptide permease AmpG compare
PP_4700 -2.9 -2.0 pantothenate synthetase compare
PP_3358 -2.9 -6.6 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_2145 -2.8 -6.7 beta-N-acetylglucosaminidase compare
PP_1615 -2.8 -10.2 Transcriptional regulator, LysR family conserved
PP_0405 -2.7 -15.1 conserved protein of unknown function compare
PP_0434 -2.7 -12.5 Anhydro-N-acetylmuramic acid kinase compare
PP_4993 -2.7 -3.2 Glutathione synthetase compare
PP_2370 -2.6 -2.8 conserved protein of unknown function compare
PP_0393 -2.6 -2.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5104 -2.4 -8.6 thiazole synthase compare
PP_1764 -2.2 -5.4 Phosphoglycolate phosphatase 2 compare
PP_0735 -2.2 -2.8 molybdopterin-synthase adenylyltransferase compare
PP_4122 -2.2 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1999 -2.2 -3.1 membrane protein required for colicin V production compare
PP_4120 -2.2 -5.0 NADH-quinone oxidoreductase subunit B compare
PP_0435 -2.2 -10.0 Peptidase, M23/M37 family compare
PP_4726 -2.2 -4.0 Chaperone protein DnaJ compare
PP_1366 -2.2 -2.2 Transcriptional regulator MvaT, P16 subunit compare
PP_1493 -2.1 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2356 -2.1 -11.3 putative Phytochrome family protein compare
PP_1233 -2.1 -5.7 sulfurtransferase compare
PP_1428 -2.0 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_4129 -2.0 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2336 -2.0 -3.0 aconitate hydratase 1 compare
PP_4782 -2.0 -4.6 Phosphomethylpyrimidine kinase compare
PP_4695 -2.0 -8.0 Sensory box histidine kinase compare
PP_0276 -1.9 -1.8 Transcriptional regulator, Cro/CI family compare
PP_0117 -1.9 -6.3 Zn(2+) ABC transporter - permease subunit compare
PP_5114 -1.8 -1.9 putative adenine methyltransferase compare
PP_0120 -1.8 -5.6 putative zinc ABC transporter compare
PP_4699 -1.8 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4922 -1.7 -9.0 Phosphomethylpyrimidine synthase compare
PP_4131 -1.7 -5.8 NADH-quinone oxidoreductase subunit N compare
PP_2414 -1.7 -1.0 conserved exported protein of unknown function compare
PP_0914 -1.7 -8.9 GGDEF domain protein compare
PP_4004 -1.7 -3.2 DNA translocase FtsK compare
PP_1824 -1.6 -2.2 Smr domain protein compare
PP_4126 -1.6 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_0339 -1.6 -5.5 Pyruvate dehydrogenase E1 component compare
PP_4124 -1.6 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_2402 -1.6 -3.2 putative Sensor histidine kinase compare
PP_4130 -1.5 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1629 -1.5 -4.6 Protein RecA compare
PP_5198 -1.5 -3.0 conserved protein of unknown function compare
PP_4058 -1.5 -8.0 1,4-alpha-glucan branching enzyme compare
PP_1568 -1.5 -1.7 conserved protein of unknown function compare
PP_2354 -1.5 -7.8 Sensory box histidine kinase/response regulator compare
PP_0789 -1.5 -7.4 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0888 -1.4 -1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0989 -1.4 -2.1 glycine cleavage system H protein 1 compare
PP_5227 -1.4 -5.5 diaminopimelate decarboxylase compare
PP_1217 -1.4 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1348 -1.4 -5.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1378 -1.4 -4.5 alpha-ketoglutarate permease compare
PP_0118 -1.4 -6.0 zinc import ATP-binding protein compare
PP_4121 -1.4 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0127 -1.3 -3.4 Thiol:disulfide interchange protein compare
PP_4098 -1.3 -2.8 UvrABC system protein C compare
PP_4116 -1.3 -8.3 isocitrate lyase compare
PP_4340 -1.3 -3.3 response regulator for chemotactic signal transduction compare
PP_3637 -1.3 -1.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5352 -1.3 -7.3 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_5217 -1.3 -9.8 Polyphosphate kinase compare
PP_0119 -1.3 -3.2 putative zinc uptake regulation protein ZUR compare
PP_1215 -1.3 -0.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_1303 -1.3 -6.1 Sulfate adenylyltransferase subunit 2 compare
PP_5230 -1.2 -2.3 Tyrosine recombinase XerC compare
PP_1293 -1.2 -2.0 molybdopterin synthase small subunit compare
PP_1216 -1.2 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0833 -1.2 -1.1 queuine tRNA-ribosyltransferase compare
PP_1055 -1.2 -2.0 Type II secretion pathway protein GspN compare
PP_1367 -1.2 -4.1 formyltetrahydrofolate hydrolase compare
PP_2136 -1.2 -3.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4480 -1.2 -6.8 arginine N-succinyltransferase, subunit alpha compare
PP_3409 -1.2 -2.5 putative Cobalamin biosynthesis protein cobE compare
PP_1589 -1.2 -6.1 uridylyltransferase compare
PP_1292 -1.1 -5.4 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_3662 -1.1 -5.2 conserved protein of unknown function compare
PP_4880 -1.1 -6.1 exoribonuclease R compare
PP_4008 -1.1 -5.7 ATP-dependent serine protease compare
PP_0834 -1.1 -1.7 Sec translocation complex subunit YajC compare
PP_5035 -1.1 -4.5 Histidine utilization repressor compare
PP_2123 -1.1 -7.3 molybdenum::molybdopterin ligase compare
PP_1426 -1.1 -8.1 L-aspartate oxidase compare
PP_4338 -1.1 -5.4 Chemotaxis histidine kinase CheA compare
PP_1734 -1.1 -2.1 Probable septum site-determining protein MinC compare
PP_0997 -1.1 -6.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_3649 -1.1 -3.3 Transcriptional regulator, GntR family compare
PP_0368 -1.1 -6.2 putative Acyl-CoA dehydrogenase compare
PP_3484 -1.1 -2.8 Response regulator receiver protein compare
PP_2302 -1.1 -3.8 DNA-binding, ATP-dependent protease compare
PP_0001 -1.1 -1.1 probable chromosome-partitioning protein compare
PP_3248 -1.0 -1.7 Dyp-type peroxidase family protein compare
PP_5310 -1.0 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_5491 -1.0 -2.2 conserved protein of unknown function with SEC-C motif domain compare
PP_1304 -1.0 -6.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0988 -1.0 -6.1 glycine dehydrogenase compare
PP_1214 -1.0 -1.6 putative transcriptional regulatory protein compare
PP_0612 -1.0 -6.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_1309 -0.9 -5.7 conserved exported protein of unknown function compare
PP_1387 -0.9 -2.4 Probable HTH-type transcriptional regulator TtgR compare
PP_2378 -0.9 -1.7 Fe/S biogenesis protein NfuA compare
PP_2847 -0.9 -2.3 Urease accessory protein UreJ compare
PP_5216 -0.9 -1.7 exopolyphosphatase compare
PP_0986 -0.9 -3.6 aminomethyltransferase compare
PP_2087 -0.9 -2.0 CmpX protein compare
PP_4375 -0.9 -5.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_0195 -0.9 -1.9 conserved protein of unknown function compare
PP_0852 -0.9 -2.4 Transcriptional regulator, Cro/CI family compare
PP_0881 -0.9 -4.2 dipeptide ABC transporter - putative membrane subunit compare
PP_4829 -0.9 -2.7 putative precorrin-3B synthase compare
PP_0484 -0.9 -4.0 transporter of an unknown substrate compare
PP_5SB -0.9 -2.2 5S ribosomal RNA compare
PP_5659 -0.9 -2.6 protein of unknown function compare
PP_0035 -0.9 -1.8 putative bactoprenol-linked glycose transferase compare
PP_1783 -0.9 -0.8 dTDP-glucose pyrophosphorylase compare
PP_4358 -0.9 -4.8 flagellar synthesis, switching and energizing component compare
PP_4368 -0.9 -4.8 flagellar motor switch protein compare
PP_3286 -0.9 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4722 -0.8 -2.6 Transcription elongation factor GreA compare
PP_1678 -0.8 -3.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4988 -0.8 -4.5 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0878 -0.8 -3.8 dipeptide ABC transporter, binding subunit compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source Ferulic Acid in Pseudomonas putida KT2440

For carbon source Ferulic Acid across organisms