Experiment set12IT025 for Pseudomonas putida KT2440

Compare to:

benzoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -8.1 -5.6 3-isopropylmalate dehydratase large subunit compare
PP_3164 -7.9 -5.5 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4678 -7.0 -15.7 Ketol-acid reductoisomerase compare
PP_5097 -6.9 -14.1 homoserine O-acetyltransferase compare
PP_0422 -6.9 -7.3 Indole-3-glycerol phosphate synthase compare
PP_1375 -6.8 -14.5 transcription regulatory protein (pca regulon) compare
PP_1995 -6.8 -4.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -6.7 -10.3 Branched-chain-amino-acid aminotransferase compare
PP_3714 -6.7 -9.2 Muconolactone Delta-isomerase compare
PP_5014 -6.6 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_5185 -6.5 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1380 -6.4 -8.7 3-oxoadipate enol-lactonase 2 compare
PP_1988 -6.4 -11.9 3-isopropylmalate dehydrogenase compare
PP_0967 -6.4 -13.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0691 -6.3 -4.4 Glutamate 5-kinase compare
PP_0290 -6.3 -6.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1377 -6.3 -10.6 beta-ketoadipyl-CoA thiolase compare
PP_1231 -6.3 -7.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4680 -6.1 -16.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -6.1 -14.1 Histidinol dehydrogenase compare
PP_3952 -6.0 -11.9 3-oxoadipate CoA-transferase subunit A compare
PP_4909 -6.0 -10.0 phosphoserine phosphatase compare
PP_0292 -5.9 -5.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -5.9 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0417 -5.9 -23.4 Anthranilate synthase component 1 compare
PP_5015 -5.9 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0420 -5.8 -12.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5098 -5.8 -11.2 methionine biosynthesis protein MetW compare
PP_3715 -5.7 -6.5 Muconate cycloisomerase 1 compare
PP_1088 -5.6 -10.1 Argininosuccinate synthase compare
PP_4723 -5.6 -11.9 Carbamoyl-phosphate synthase large chain compare
PP_3716 -5.6 -9.2 HTH-type transcriptional regulator compare
PP_4724 -5.5 -7.6 Carbamoyl-phosphate synthase small chain compare
PP_5289 -5.4 -6.5 Acetylglutamate kinase compare
PP_1079 -5.4 -7.8 Ornithine carbamoyltransferase compare
PP_0965 -5.4 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -5.3 -10.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0164 -5.3 -11.3 conserved protein of unknown function compare
PP_4890 -5.3 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_2001 -5.2 -12.5 O-succinylhomoserine sulfhydrylase compare
PP_0787 -5.2 -4.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4679 -5.2 -9.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3951 -5.1 -6.8 3-oxoadipate CoA-transferase subunit A compare
PP_5128 -5.1 -9.2 Dihydroxy-acid dehydratase compare
PP_0184 -5.0 -3.5 Argininosuccinate lyase compare
PP_0082 -4.8 -4.7 tryptophan synthase alpha chain compare
PP_1986 -4.8 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_1216 -4.8 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2327 -4.8 -7.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_3999 -4.7 -10.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5095 -4.7 -3.1 pyrroline-5-carboxylate reductase compare
PP_0421 -4.6 -8.2 Anthranilate phosphoribosyltransferase compare
PP_5303 -4.5 -6.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0083 -4.5 -6.1 tryptophan synthase beta chain compare
PP_2371 -4.4 -9.9 Sulphite reductase hemoprotein, beta subunit compare
PP_2370 -4.3 -4.2 conserved protein of unknown function compare
PP_4799 -4.3 -4.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1025 -4.3 -9.8 2-isopropylmalate synthase compare
PP_5155 -4.1 -5.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4364 -4.1 -5.9 putative Anti-sigma F factor antagonist compare
PP_2168 -3.9 -11.0 Transaldolase compare
PP_0291 -3.8 -5.3 conserved protein of unknown function compare
PP_3163 -3.7 -11.4 benzoate 1,2-dioxygenase electron transfer component compare
PP_4999 -3.6 -3.3 dihydroorotase-like protein compare
PP_3821 -3.4 -11.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3590 -3.4 -7.1 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0001 -3.2 -2.6 probable chromosome-partitioning protein compare
PP_4943 -3.2 -3.6 putative Glycosyl transferase compare
PP_3159 -3.2 -8.7 BenABC operon transcriptional activator compare
PP_2414 -3.0 -3.1 conserved exported protein of unknown function compare
PP_1233 -3.0 -5.1 sulfurtransferase compare
PP_4004 -2.9 -4.4 DNA translocase FtsK compare
PP_3161 -2.9 -12.2 benzoate 1,2-dioxygenase subunit alpha compare
PP_4699 -2.9 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4696 -2.8 -5.3 Nitrogen regulation protein NR(I) compare
PP_4700 -2.8 -2.7 pantothenate synthetase compare
PP_1994 -2.7 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_3162 -2.7 -5.9 benzoate 1,2-dioxygenase subunit beta compare
PP_4782 -2.6 -5.2 Phosphomethylpyrimidine kinase compare
PP_1426 -2.6 -14.2 L-aspartate oxidase compare
PP_5104 -2.6 -8.6 thiazole synthase compare
PP_4993 -2.6 -4.3 Glutathione synthetase compare
PP_2388 -2.6 -6.9 Transporter, LysE family compare
PP_2390 -2.5 -8.0 Transcriptional regulator, LysR family compare
PP_4902 -2.5 -3.1 Oligoribonuclease compare
PP_0339 -2.4 -6.5 Pyruvate dehydrogenase E1 component compare
PP_2328 -2.4 -7.9 Phosphoadenosine phosphosulfate reductase compare
PP_0735 -2.4 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_0846 -2.3 -2.0 DnaK-like molecular chaperone specific for IscU compare
PP_0393 -2.2 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4910 -2.1 -2.8 conserved protein of unknown function compare
PP_4917 -2.1 -5.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4922 -2.1 -10.1 Phosphomethylpyrimidine synthase compare
PP_1654 -2.0 -4.3 cysteine synthase B compare
PP_1468 -2.0 -1.6 Tyrosine recombinase XerD compare
PP_5230 -2.0 -3.4 Tyrosine recombinase XerC compare
PP_2356 -2.0 -11.6 putative Phytochrome family protein compare
PP_1734 -2.0 -2.6 Probable septum site-determining protein MinC compare
PP_3662 -1.9 -7.2 conserved protein of unknown function compare
PP_0833 -1.9 -1.3 queuine tRNA-ribosyltransferase compare
PP_1215 -1.9 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_2137 -1.9 -2.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_0914 -1.9 -10.1 GGDEF domain protein compare
PP_1378 -1.9 -5.6 alpha-ketoglutarate permease compare
PP_3484 -1.9 -5.1 Response regulator receiver protein compare
PP_4129 -1.8 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1664 -1.8 -5.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_1912 -1.8 -4.8 Phosphate acyltransferase compare
PP_4940 -1.8 -6.3 Putative glycosyltransferase compare
PP_3105 -1.8 -2.1 conserved membrane protein of unknown function compare
PP_0959 -1.7 -2.5 phospholipid ABC transporter compare
PP_4120 -1.7 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_3493 -1.7 -9.0 Transcriptional regulator, LysR family compare
PP_0406 -1.7 -7.2 Nucleotidyltransferase family protein compare
PP_0834 -1.6 -2.0 Sec translocation complex subunit YajC compare
PP_4481 -1.6 -5.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2354 -1.6 -8.5 Sensory box histidine kinase/response regulator compare
PP_5217 -1.6 -11.0 Polyphosphate kinase compare
PP_1348 -1.6 -4.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4880 -1.5 -7.9 exoribonuclease R compare
PP_4338 -1.5 -6.4 Chemotaxis histidine kinase CheA compare
PP_2378 -1.5 -2.6 Fe/S biogenesis protein NfuA compare
PP_0997 -1.5 -6.7 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_1783 -1.5 -1.0 dTDP-glucose pyrophosphorylase compare
PP_0435 -1.4 -8.5 Peptidase, M23/M37 family compare
PP_3713 -1.4 -6.2 Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data) compare
PP_4480 -1.4 -7.0 arginine N-succinyltransferase, subunit alpha compare
PP_3649 -1.4 -3.8 Transcriptional regulator, GntR family compare
PP_5035 -1.4 -5.3 Histidine utilization repressor compare
PP_0368 -1.4 -6.8 putative Acyl-CoA dehydrogenase compare
PP_0319 -1.4 -2.0 conserved protein of unknown function compare
PP_4329 -1.3 -3.0 FlhB domain protein compare
PP_3790 -1.3 -7.7 diaminopimelate epimerase compare
PP_3946 -1.3 -1.0 HTH-type transcriptional repressor NicR compare
PP_0989 -1.3 -3.0 glycine cleavage system H protein 1 compare
PP_4126 -1.3 -1.9 NADH-quinone oxidoreductase subunit I compare
PP_0986 -1.3 -5.0 aminomethyltransferase compare
PP_2402 -1.3 -2.3 putative Sensor histidine kinase compare
PP_4124 -1.3 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_0872 -1.3 -3.9 Peptide chain release factor 3 compare
PP_4561 -1.3 -0.9 stress response protein compare
PP_4340 -1.2 -2.7 response regulator for chemotactic signal transduction compare
PP_3248 -1.2 -1.9 Dyp-type peroxidase family protein compare
PP_0063 -1.2 -2.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0340 -1.2 -7.6 Glutamate-ammonia-ligase adenylyltransferase compare
PP_4392 -1.2 -4.6 chemotaxis protein methyltransferase compare
PP_0960 -1.2 -3.9 phospholipid ABC transporter binding protein compare
PP_5146 -1.2 -5.9 RNA pyrophosphohydrolase compare
PP_1353 -1.2 -0.8 conserved membrane protein of unknown function compare
PP_0958 -1.2 -4.2 phospholipid ABC transporter ATP-binding subunit compare
PP_4358 -1.2 -6.3 flagellar synthesis, switching and energizing component compare
PP_0673 -1.2 -2.6 conserved protein of unknown function compare
PP_4131 -1.2 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_2302 -1.1 -3.3 DNA-binding, ATP-dependent protease compare
PP_4130 -1.1 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1493 -1.1 -1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2928 -1.1 -6.8 Saccharopine dehydrogenase compare
PP_4828 -1.1 -1.1 Precorrin-8X methylmutase compare
PP_0988 -1.1 -7.4 glycine dehydrogenase compare
PP_0612 -1.1 -5.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_1366 -1.1 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_0356 -1.1 -5.9 malate synthase G compare
PP_3359 -1.1 -2.9 putative Hydroxycinnamic acid degradation regulator compare
PP_1062 -1.1 -2.5 MutT/nudix family protein compare
PP_5661 -1.1 -3.6 putative lipoprotein compare
PP_1387 -1.1 -3.3 Probable HTH-type transcriptional regulator TtgR compare
PP_4337 -1.1 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4098 -1.0 -2.3 UvrABC system protein C compare
PP_4938 -1.0 -4.3 putative Glycosyl transferase compare
PP_5022 -1.0 -1.9 Glutamine transport ATP-binding protein GlnQ compare
PP_1733 -1.0 -1.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1764 -1.0 -4.7 Phosphoglycolate phosphatase 2 compare
PP_0962 -1.0 -2.1 toluene-tolerance protein compare
PP_5227 -1.0 -4.5 diaminopimelate decarboxylase compare
PP_4519 -1.0 -7.1 Agglutination protein compare
PP_2145 -1.0 -4.5 beta-N-acetylglucosaminidase compare
PP_0003 -1.0 -2.5 16S RNA methyltransferase compare
PP_1629 -1.0 -3.3 Protein RecA compare
PP_4905 -1.0 -4.4 Flagellar motor rotation protein compare
PP_3241 -1.0 -1.1 conserved exported protein of unknown function compare
PP_5114 -1.0 -1.1 putative adenine methyltransferase compare
PP_3102 -1.0 -3.7 conserved protein of unknown function compare
PP_2203 -1.0 -0.9 conserved protein of unknown function compare
PP_1589 -1.0 -6.8 uridylyltransferase compare
PP_4375 -1.0 -5.2 flagellar chaperone, inhibits premature FliC assembly compare
PP_1176 -1.0 -0.9 conserved protein of unknown function compare
PP_4333 -1.0 -3.2 CheW domain protein compare
PP_1778 -1.0 -3.1 Lipopolysaccharide ABC export system, permease protein compare
PP_2000 -1.0 -1.5 amidophosphoribosyl transferase compare
PP_2847 -1.0 -1.7 Urease accessory protein UreJ compare
PP_0961 -1.0 -5.0 toluene tolerance protein compare
PP_5331 -1.0 -3.0 Long-chain acyl-CoA thioester hydrolase compare
PP_1678 -1.0 -2.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0191 -0.9 -2.4 Transcriptional regulatory protein AlgQ compare
PP_2159 -0.9 -2.7 Copper-binding protein, plastocyanin/azurin family compare
PP_1214 -0.9 -2.2 putative transcriptional regulatory protein compare
PP_4726 -0.9 -1.6 Chaperone protein DnaJ compare
PP_1917 -0.9 -4.4 4-amino-4-deoxychorismate lyase compare
PP_2087 -0.9 -1.7 CmpX protein compare
PP_2345 -0.9 -3.0 conserved exported protein of unknown function compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source benzoic acid in Pseudomonas putida KT2440

For carbon source benzoic acid across organisms