Experiment set12IT024 for Pseudomonas putida KT2440

Compare to:

p-Coumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4890 -8.1 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_3951 -7.8 -5.4 3-oxoadipate CoA-transferase subunit A compare
PP_1985 -7.7 -5.3 3-isopropylmalate dehydratase large subunit compare
PP_1988 -7.4 -7.2 3-isopropylmalate dehydrogenase compare
PP_3952 -7.3 -8.7 3-oxoadipate CoA-transferase subunit A conserved
PP_1377 -7.3 -7.1 beta-ketoadipyl-CoA thiolase conserved
PP_5098 -7.2 -4.9 methionine biosynthesis protein MetW compare
PP_1379 -6.9 -6.7 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_0420 -6.9 -11.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4656 -6.8 -9.3 protocatechuate 3,4-dioxygenase beta chain compare
PP_0967 -6.7 -11.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2001 -6.6 -11.0 O-succinylhomoserine sulfhydrylase compare
PP_2168 -6.5 -7.7 Transaldolase compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_4678 -6.4 -14.9 Ketol-acid reductoisomerase compare
PP_5014 -6.3 -4.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4680 -6.3 -13.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -6.3 -4.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0417 -6.3 -19.8 Anthranilate synthase component 1 compare
PP_2371 -6.2 -7.4 Sulphite reductase hemoprotein, beta subunit compare
PP_0966 -6.2 -13.2 Histidinol dehydrogenase compare
PP_0422 -6.1 -7.3 Indole-3-glycerol phosphate synthase compare
PP_5097 -6.1 -14.8 homoserine O-acetyltransferase compare
PP_4723 -6.0 -5.9 Carbamoyl-phosphate synthase large chain compare
PP_1995 -6.0 -7.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -6.0 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3511 -5.9 -10.7 Branched-chain-amino-acid aminotransferase compare
PP_1088 -5.9 -5.7 Argininosuccinate synthase compare
PP_1380 -5.9 -8.0 3-oxoadipate enol-lactonase 2 conserved
PP_4724 -5.8 -5.6 Carbamoyl-phosphate synthase small chain compare
PP_4679 -5.7 -7.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0965 -5.4 -10.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1375 -5.4 -15.5 transcription regulatory protein (pca regulon) compare
PP_3357 -5.2 -5.7 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) conserved
PP_5128 -5.2 -8.9 Dihydroxy-acid dehydratase compare
PP_0083 -5.1 -3.5 tryptophan synthase beta chain compare
PP_2388 -5.1 -5.2 Transporter, LysE family compare
PP_5289 -5.1 -6.0 Acetylglutamate kinase compare
PP_5185 -5.0 -6.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4909 -5.0 -10.1 phosphoserine phosphatase compare
PP_1025 -4.9 -14.8 2-isopropylmalate synthase compare
PP_0421 -4.9 -8.0 Anthranilate phosphoribosyltransferase compare
PP_3999 -4.9 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5303 -4.8 -7.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0082 -4.8 -3.3 tryptophan synthase alpha chain compare
PP_0691 -4.8 -5.7 Glutamate 5-kinase compare
PP_3538 -4.6 -14.3 transcriptional regulator conserved
PP_0292 -4.6 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3537 -4.6 -10.7 p-hydroxybenzoate hydroxylase conserved
PP_1231 -4.6 -8.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -4.5 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0184 -4.5 -4.4 Argininosuccinate lyase compare
PP_1079 -4.4 -7.9 Ornithine carbamoyltransferase compare
PP_5095 -4.4 -3.0 pyrroline-5-carboxylate reductase compare
PP_4799 -4.4 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2327 -4.3 -6.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4364 -4.3 -4.7 putative Anti-sigma F factor antagonist compare
PP_4999 -4.3 -2.9 dihydroorotase-like protein compare
PP_4655 -4.2 -8.2 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_3356 -4.2 -15.2 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) conserved
PP_5155 -4.2 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0289 -4.1 -6.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0164 -4.1 -8.7 conserved protein of unknown function compare
PP_1713 -4.0 -2.7 Transcriptional regulator PcaQ compare
PP_2390 -3.9 -9.0 Transcriptional regulator, LysR family compare
PP_2370 -3.9 -4.0 conserved protein of unknown function compare
PP_0291 -3.7 -3.6 conserved protein of unknown function compare
PP_4696 -3.7 -3.6 Nitrogen regulation protein NR(I) compare
PP_4098 -3.4 -4.0 UvrABC system protein C compare
PP_4126 -3.2 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_3358 -3.1 -8.2 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_2328 -3.1 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_4782 -3.0 -6.8 Phosphomethylpyrimidine kinase compare
PP_4700 -2.8 -2.0 pantothenate synthetase compare
PP_2414 -2.8 -3.6 conserved exported protein of unknown function compare
PP_1381 -2.6 -2.1 4-carboxymuconolactone decarboxylase compare
PP_0735 -2.6 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_4699 -2.6 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5104 -2.5 -6.2 thiazole synthase compare
PP_0356 -2.5 -7.6 malate synthase G compare
PP_3766 -2.5 -3.0 Lactoylglutathione lyase compare
PP_1217 -2.3 -4.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5085 -2.3 -6.9 malic enzyme B compare
PP_1654 -2.2 -3.7 cysteine synthase B compare
PP_3590 -2.1 -5.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1355 -2.1 -16.3 Muropeptide permease AmpG compare
PP_0434 -2.1 -12.0 Anhydro-N-acetylmuramic acid kinase compare
PP_4120 -2.0 -4.4 NADH-quinone oxidoreductase subunit B compare
PP_0406 -2.0 -7.7 Nucleotidyltransferase family protein compare
PP_2136 -2.0 -3.5 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0393 -2.0 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1233 -2.0 -4.4 sulfurtransferase compare
PP_0846 -1.9 -1.9 DnaK-like molecular chaperone specific for IscU compare
PP_2356 -1.9 -9.6 putative Phytochrome family protein compare
PP_5216 -1.9 -2.6 exopolyphosphatase compare
PP_5217 -1.9 -11.1 Polyphosphate kinase compare
PP_0405 -1.9 -13.4 conserved protein of unknown function compare
PP_4993 -1.9 -3.3 Glutathione synthetase compare
PP_0368 -1.8 -8.1 putative Acyl-CoA dehydrogenase compare
PP_4004 -1.8 -3.3 DNA translocase FtsK compare
PP_2145 -1.7 -6.8 beta-N-acetylglucosaminidase compare
PP_4922 -1.7 -8.4 Phosphomethylpyrimidine synthase compare
PP_1378 -1.7 -4.4 alpha-ketoglutarate permease compare
PP_5000 -1.7 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_1733 -1.6 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_2087 -1.6 -2.6 CmpX protein compare
PP_0435 -1.6 -8.3 Peptidase, M23/M37 family compare
PP_4129 -1.6 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1734 -1.6 -2.1 Probable septum site-determining protein MinC compare
PP_1384 -1.6 -5.4 Probable efflux pump outer membrane protein TtgC compare
PP_5571 -1.6 -2.0 conserved protein of unknown function compare
PP_2000 -1.6 -1.5 amidophosphoribosyl transferase compare
PP_5028 -1.5 -2.3 proline iminopeptidase compare
PP_1426 -1.5 -9.0 L-aspartate oxidase compare
PP_1764 -1.5 -3.8 Phosphoglycolate phosphatase 2 compare
PP_2354 -1.5 -8.3 Sensory box histidine kinase/response regulator compare
PP_1293 -1.5 -1.5 molybdopterin synthase small subunit compare
PP_4124 -1.5 -3.8 NADH-quinone oxidoreductase subunit G compare
PP_0653 -1.4 -1.7 conserved protein of unknown function compare
PP_5347 -1.4 -8.1 pyruvate carboxylase subunit A compare
PP_3946 -1.4 -1.2 HTH-type transcriptional repressor NicR compare
PP_4961 -1.4 -1.6 putative Lipoprotein compare
PP_3790 -1.4 -7.3 diaminopimelate epimerase compare
PP_2345 -1.3 -3.8 conserved exported protein of unknown function compare
PP_4144 -1.3 -4.8 Hydroxyacylglutathione hydrolase compare
PP_1348 -1.3 -5.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1062 -1.3 -3.4 MutT/nudix family protein compare
PP_3519 -1.3 -1.6 putative Lipoprotein compare
PP_0339 -1.2 -3.7 Pyruvate dehydrogenase E1 component compare
PP_3359 -1.2 -1.1 putative Hydroxycinnamic acid degradation regulator compare
PP_1493 -1.2 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1731 -1.2 -2.6 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_1097 -1.2 -1.9 Methionine--tRNA ligase compare
PP_4695 -1.2 -5.2 Sensory box histidine kinase compare
PP_1215 -1.2 -1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_4480 -1.2 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_5035 -1.1 -4.4 Histidine utilization repressor compare
PP_4131 -1.1 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_3102 -1.1 -3.0 conserved protein of unknown function compare
PP_1548 -1.1 -3.4 conserved protein of unknown function compare
PP_2433 -1.1 -1.7 conserved protein of unknown function compare
PP_2475 -1.1 -3.0 Transcriptional regulator, TetR family compare
PP_4122 -1.1 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4880 -1.1 -5.7 exoribonuclease R compare
PP_1237 -1.1 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4902 -1.1 -2.0 Oligoribonuclease compare
PP_1216 -1.1 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5346 -1.1 -6.2 pyruvate carboxylase subunit B compare
PP_0855 -1.0 -1.2 conserved protein of unknown function compare
PP_1186 -1.0 -0.7 two component system DNA-binding transcriptional dual regulator compare
PP_2402 -1.0 -2.2 putative Sensor histidine kinase compare
PP_1185 -1.0 -2.9 Outer membrane protein H1 compare
PP_2336 -1.0 -2.4 aconitate hydratase 1 compare
PP_4697 -1.0 -1.9 poly(A) polymerase compare
PP_4130 -1.0 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3649 -1.0 -3.2 Transcriptional regulator, GntR family compare
PP_2324 -1.0 -4.5 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1385 -1.0 -7.5 Probable efflux pump membrane transporter TtgB compare
PP_0848 -1.0 -1.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1076 -1.0 -1.6 aquaglyceroporin compare
PP_1386 -1.0 -4.9 Probable efflux pump periplasmic linker TtgA compare
PP_0002 -1.0 -4.3 probable chromosome partition protein compare
PP_1303 -1.0 -4.8 Sulfate adenylyltransferase subunit 2 compare
PP_2186 -1.0 -2.6 putative Formate dehydrogenase, delta subunit compare
PP_5227 -0.9 -3.7 diaminopimelate decarboxylase compare
PP_1677 -0.9 -2.9 Adenosyl-cobyric acid synthase compare
PP_4726 -0.9 -2.5 Chaperone protein DnaJ compare
PP_0003 -0.9 -1.6 16S RNA methyltransferase compare
PP_4681 -0.9 -1.9 conserved protein of unknown function compare
PP_5202 -0.9 -2.6 putative cell division protein compare
PP_3365 -0.9 -1.4 Acetolactate synthase compare
PP_1664 -0.9 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_1589 -0.9 -4.4 uridylyltransferase compare
PP_1374 -0.9 -2.9 conserved protein of unknown function compare
PP_2337 -0.9 -1.6 aconitate isomerase compare
PP_0612 -0.9 -4.6 FAD-dependent glycine/D-amino acid oxidase compare
PP_1204 -0.9 -3.0 putative Lipoprotein compare
PP_4828 -0.9 -1.0 Precorrin-8X methylmutase compare
PP_1629 -0.9 -2.7 Protein RecA compare
PP_2378 -0.9 -1.6 Fe/S biogenesis protein NfuA compare
PP_2123 -0.9 -4.8 molybdenum::molybdopterin ligase compare
PP_0035 -0.9 -1.8 putative bactoprenol-linked glycose transferase compare
PP_1304 -0.9 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4829 -0.8 -1.5 putative precorrin-3B synthase compare
PP_5350 -0.8 -1.6 Transcriptional regulator, RpiR family compare
PP_1021 -0.8 -3.6 DNA-binding transcriptional regulator compare
PP_1207 -0.8 -2.5 conserved protein of unknown function compare
PP_2144 -0.8 -2.8 Transcriptional regulator, TetR family compare
PP_4196 -0.8 -1.7 conserved exported protein of unknown function compare
PP_0117 -0.8 -3.5 Zn(2+) ABC transporter - permease subunit compare
PP_0048 -0.8 -1.3 conserved protein of unknown function compare
PP_3312 -0.8 -1.6 putative Heat shock protein compare
PP_5453 -0.8 -1.3 conserved protein of unknown function compare
PP_4121 -0.8 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4008 -0.8 -3.4 ATP-dependent serine protease compare
PP_0789 -0.8 -3.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2029 -0.8 -1.5 von Willebrand factor type A domain protein compare
PP_1609 -0.8 -2.1 conserved protein of unknown function compare
PP_2622 -0.8 -2.4 conserved protein of unknown function compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source p-Coumaric acid in Pseudomonas putida KT2440

For carbon source p-Coumaric acid across organisms