Experiment set12IT024 for Agrobacterium fabrum C58

Compare to:

Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu4616 -4.0 -3.5 dTDP-4-dehydrorhamnose reductase compare
Atu0331 -3.2 -4.5 sigma-54 modulation protein compare
Atu6036 -3.0 -1.9 entry-exclusion protein compare
Atu3763 -3.0 -2.0 hypothetical protein compare
Atu0354 -2.7 -3.1 ferric uptake regulator compare
Atu0086 -2.6 -2.3 ribosome-binding factor A compare
Atu0399 -2.4 -7.3 dihydroorotase compare
Atu1874 -2.4 -3.6 RecA protein compare
Atu1417 -2.4 -7.6 enoyl-CoA hydratase compare
Atu0030 -2.3 -2.2 phosphocarrier protein HPr compare
Atu1030 -2.2 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3707 -2.1 -4.0 phosphoserine aminotransferase compare
Atu3468 -1.9 -1.4 hypothetical protein compare
Atu1307 -1.9 -4.9 dihydroorotase compare
Atu2183 -1.8 -8.7 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2239 -1.8 -4.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0298 -1.8 -6.2 orotidine 5 compare
Atu3908 -1.8 -7.1 GntR family transcriptional regulator compare
Atu0041 -1.7 -2.6 glutamine amidotransferase compare
Atu0486 -1.7 -4.8 dihydroorotate dehydrogenase compare
Atu4166 -1.7 -2.8 UDP-glucose 4-epimerase compare
Atu2787 -1.7 -1.5 hypothetical protein compare
Atu4317 -1.6 -3.3 TetR family transcriptional regulator compare
Atu3706 -1.6 -6.7 D-3-phosphoglycerate dehydrogenase compare
Atu0895 -1.6 -3.3 ABC transporter, substrate binding protein compare
Atu0039 -1.5 -2.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu5125 -1.5 -5.6 GntR family transcriptional regulator compare
Atu0769 -1.5 -1.4 protoheme IX farnesyltransferase compare
Atu1588 -1.5 -7.1 homoserine dehydrogenase compare
Atu3353 -1.5 -7.5 mannose-1-phosphate guanylyltransferase compare
Atu0141 -1.5 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu0894 -1.5 -2.6 ABC transporter, membrane spanning protein compare
Atu4614 -1.5 -8.5 glycosyltransferase compare
Atu0361 -1.4 -3.2 transcriptional regulator compare
Atu0043 -1.4 -2.6 imidazoleglycerol-phosphate dehydratase compare
Atu0017 -1.4 -3.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4617 -1.4 -8.8 dTDP-D-glucose-4,6-dehydratase compare
Atu8138 -1.4 -2.1 hypothetical protein compare
Atu4615 -1.4 -9.1 glucose-1-phosphate thymidylyltransferase compare
Atu0184 -1.4 -2.1 glucokinase compare
Atu2207 -1.4 -3.3 two component sensor kinase compare
Atu4618 -1.4 -7.5 dTDP-rhamnose-3,5-epimerase compare
Atu2289 -1.3 -9.0 anthranilate synthase component I and II compare
Atu0419 -1.3 -2.1 two component sensor kinase compare
Atu0400 -1.3 -2.6 orotate phosphoribosyltransferase compare
Atu1364 -1.3 -3.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4346 -1.3 -3.3 hypothetical protein compare
Atu0099 -1.2 -4.9 prephenate dehydratase compare
Atu2067 -1.2 -1.2 hypothetical protein compare
Atu0026 -1.2 -1.2 hypothetical protein compare
Atu2125 -1.2 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu3754 -1.2 -4.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0029 -1.1 -3.1 S-adenosylhomocysteine hydrolase compare
Atu3311 -1.1 -7.4 phosphomannose isomerase compare
Atu2684 -1.1 -1.0 hypothetical protein compare
Atu2036 -1.1 -6.8 acetolactate synthase III, large subunit compare
Atu2662 -1.1 -1.3 acetyltransferase compare
Atu0401 -1.1 -3.8 fructokinase compare
Atu2728 -1.1 -2.3 beta (1-->2) glucan export ATP-binding protein compare
Atu1308 -1.1 -3.6 aspartate carbamoyl transferase catalytic subunit compare
Atu0269 -1.1 -2.8 exodeoxyribonuclease VII large subunit compare
Atu1260 -1.1 -1.5 hypothetical protein compare
Atu1503 -1.0 -1.2 hypothetical protein compare
Atu2073 -1.0 -2.2 membrane protein compare
Atu4613 -1.0 -7.8 glycosyltransferase compare
Atu2441 -1.0 -2.3 RNA methylase compare
Atu0640 -1.0 -1.1 hypothetical protein compare
Atu0679 -1.0 -3.2 ATP phosphoribosyltransferase compare
Atu4610 -0.9 -6.0 sugar nucleotide epimerase/dehydratase compare
Atu2803 -0.9 -2.7 Cobalamin biosynthesis associated protein compare
Atu8167 -0.9 -5.5 putative transmembrane protein compare
Atu1528 -0.9 -5.7 nitrogen fixation protein FixI compare
Atu0678 -0.9 -3.7 histidyl-tRNA synthetase compare
Atu0375 -0.9 -2.1 small heat shock protein compare
Atu2832 -0.9 -2.4 tRNA modification GTPase compare
Atu1026 -0.9 -2.3 hypothetical protein compare
Atu3755 -0.9 -2.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3750 -0.9 -2.1 thiamine-phosphate pyrophosphorylase compare
Atu1163 -0.9 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1447 -0.9 -1.8 two component sensor kinase compare
Atu2237 -0.9 -3.6 cytochrome c1 compare
Atu2640 -0.9 -2.7 hypothetical protein compare
Atu0690 -0.9 -1.7 hypothetical protein compare
Atu4410 -0.9 -3.0 periplasmic nitrate reductase, cytochrome c-type protein compare
Atu1031 -0.9 -2.1 hypothetical protein compare
Atu2831 -0.9 -2.9 glucose inhibited division protein A compare
Atu1902 -0.8 -2.5 transketolase compare
Atu1602 -0.8 -3.3 transcriptional activator, Crp family compare
Atu1074 -0.8 -4.8 NAD/NADP dependent oxidoreductase compare
Atu1705 -0.8 -2.1 SEC-independent protein translocase protein compare
Atu3469 -0.8 -1.5 phosphoglyceromutase compare
Atu0977 -0.8 -2.1 serine protease DO-like protease compare
Atu2368 -0.8 -1.3 hypothetical protein compare
Atu0050 -0.8 -2.9 two component response regulator compare
Atu1141 -0.8 -3.2 Phosphoribosylglycinamide synthetase compare
Atu2238 -0.8 -2.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1173 -0.8 -5.0 MFS permease compare
Atu2824 -0.8 -2.7 hypothetical protein compare
Atu1513 -0.8 -2.6 ABC excinuclease subunit A compare
Atu3727 -0.8 -3.0 hypothetical protein compare
Atu2615 -0.8 -3.2 hypothetical protein compare
Atu1774 -0.8 -3.5 ABC transporter, substrate binding protein (peptide) compare
Atu1359 -0.8 -0.8 dnaK deletion suppressor protein compare
Atu0703 -0.8 -2.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1075 -0.8 -3.3 amidophosphoribosyltransferase compare
Atu3012 -0.8 -1.4 hypothetical protein compare
Atu2555 -0.7 -1.8 L-lysine 2,3-aminomutase compare
Atu2801 -0.7 -2.5 precorrin-2 C20 methyltransferase compare
Atu1739 -0.7 -2.6 permease compare
Atu3005 -0.7 -1.0 hypothetical protein compare
Atu2057 -0.7 -1.7 DNA helicase II compare
Atu1028 -0.7 -1.3 hypothetical protein compare
Atu1644 -0.7 -2.7 hypothetical protein compare
Atu0749 -0.7 -2.1 biotin synthesis BioY protein compare
Atu0723 -0.7 -1.1 FAD dependent oxidoreductase compare
Atu1468 -0.7 -3.6 hypothetical protein compare
Atu2791 -0.7 -4.2 3-isopropylmalate dehydrogenase compare
Atu3733 -0.7 -2.0 hypothetical protein compare
Atu5123 -0.7 -5.5 acetolactate synthase catalytic subunit compare
Atu1530 -0.7 -4.3 nitrogen fixation protein FixG compare
Atu4609 -0.7 -5.4 glycosyltransferase compare
Atu3815 -0.7 -3.2 GntR family transcriptional regulator compare
Atu1225 -0.7 -1.3 hypothetical protein compare
Atu1127 -0.7 -1.8 molybdopterin converting factor small subunit compare
Atu4773 -0.7 -1.5 two component response regulator compare
Atu4217 -0.7 -0.6 TetR family transcriptional regulator compare
Atu0031 -0.7 -0.9 PTS system, IIA component compare
Atu0093 -0.7 -1.8 Recombination protein compare
Atu3572 -0.7 -3.3 transcriptional regulator compare
Atu0976 -0.7 -1.3 cycL protein compare
Atu3732 -0.7 -4.0 hemolysin compare
Atu1980 -0.7 -1.5 hypothetical protein compare
Atu8052 -0.7 -1.0 hypothetical protein compare
Atu2807 -0.7 -2.9 cob(I)alamin adenosyltransferase compare
Atu8023 -0.7 -1.6 hypothetical protein compare
Atu2692 -0.7 -2.2 intracellular septation protein compare
Atu0025 -0.7 -1.0 hypothetical protein compare
Atu1446 -0.7 -1.2 two component response regulator compare
Atu3423 -0.7 -1.2 hypothetical protein compare
Atu4328 -0.6 -1.8 hypothetical protein compare
Atu2617 -0.6 -0.8 chemotaxis protein compare
Atu1850 -0.6 -1.5 phosphoribosylformylglycinamidine synthetase II compare
Atu0922 -0.6 -2.7 hypothetical protein compare
Atu2722 -0.6 -2.8 porin compare
Atu1536 -0.6 -2.5 cytochrome C oxidase, FixO chain compare
Atu1534 -0.6 -2.7 cytochrome-c oxidase, FixP chain compare
Atu0038 -0.6 -2.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0647 -0.6 -3.0 phosphoribosylamine--glycine ligase compare
Atu1750 -0.6 -2.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu0893 -0.6 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2058 -0.6 -2.5 hypothetical protein compare
Atu0660 -0.6 -3.8 hydrolase compare
Atu5124 -0.6 -4.3 glutamate-1-semialdehyde aminotransferase compare
Atu0051 -0.6 -2.2 two component sensor kinase compare
Atu2746 -0.6 -1.6 hypothetical protein compare
Atu0602 -0.6 -3.6 glutamine synthetase compare
Atu0046 -0.6 -3.8 hypothetical protein compare
Atu1844 -0.6 -0.7 Phosphoribosylformylglycinamidine synthetase compare
Atu2083 -0.6 -2.1 DNA repair protein RecN compare
Atu4099 -0.6 -2.8 hypothetical protein compare
Atu1580 -0.6 -3.5 ABC transporter, nucleotide binding/ATPase protein (amino acid) compare
Atu0319 -0.6 -0.8 ubiquinone biosynthesis protein compare
Atu2718 -0.6 -2.7 homoserine O-succinyltransferase compare
Atu2797 -0.6 -1.6 cobalamin biosynthesis protein compare
Atu1205 -0.6 -3.6 threonine dehydratase compare
Atu3201 -0.6 -3.7 TetR family transcriptional regulator compare
Atu0001 -0.6 -2.7 hypothetical protein compare
Atu0153 -0.6 -1.8 transcriptional regulator, Fur family compare
Atu0011 -0.6 -2.0 transcriptional regulator compare
Atu1527 -0.6 -2.7 nitrogen fixation protein FixS compare
Atu3248 -0.6 -3.2 cell division inhibitor compare
Atu0659 -0.6 -2.2 NTP pyrophosphohydrolase, MutT family compare
Atu0537 -0.6 -1.8 histidinol dehydrogenase compare
Atu2650 -0.6 -3.7 glycerol-3-phosphate dehydrogenase compare
Atu1645 -0.6 -3.0 ABC transporter, substrate binding protein compare
Atu1904 -0.6 -3.0 transcriptional regulator compare
Atu0101 -0.6 -1.8 cytochrome c compare
Atu1258 -0.6 -2.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu1859 -0.6 -2.1 glutaminase A compare
Atu1470 -0.6 -0.8 Camphor resistance protein compare
Atu1683 -0.6 -1.2 hypothetical protein compare
Atu0188 -0.6 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu3494 -0.6 -2.6 hypothetical protein compare
Atu1537 -0.6 -3.3 cytochrome-c oxidase, FixN chain compare
Atu2709 -0.6 -4.3 3-isopropylmalate dehydratase, large subunit compare
Atu5157 -0.6 -1.3 hypothetical protein compare
Atu1077 -0.6 -1.9 DNA repair protein compare
Atu1535 -0.6 -1.4 cytochrome c oxidase, FixQ chain compare
Atu1099 -0.6 -2.8 hypothetical protein compare
Atu3744 -0.5 -3.7 ABC transporter permease compare
Atu1232 -0.5 -1.1 hypothetical protein compare
Atu4711 -0.5 -2.8 two component sensor kinase compare
Atu0973 -0.5 -2.7 cycH protein compare
Atu1688 -0.5 -2.3 indole-3-glycerol-phosphate synthase compare
Atu3506 -0.5 -2.2 hypothetical protein compare
Atu1973 -0.5 -1.3 hypothetical protein compare
Atu0421 -0.5 -0.9 ABC transporter, membrane spanning protein compare
Atu0627 -0.5 -1.8 carboxymethylenebutenolidase compare
Atu0340 -0.5 -1.3 SAM dependent methyltransferase compare
Atu2127 -0.5 -2.4 L-carnitine dehydratase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms