Experiment set12IT022 for Pseudomonas putida KT2440

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.8 -5.4 Indole-3-glycerol phosphate synthase compare
PP_0787 -7.5 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1985 -7.1 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_0966 -6.9 -10.5 Histidinol dehydrogenase compare
PP_1988 -6.9 -9.4 3-isopropylmalate dehydrogenase compare
PP_3511 -6.8 -9.4 Branched-chain-amino-acid aminotransferase compare
PP_2001 -6.8 -11.3 O-succinylhomoserine sulfhydrylase compare
PP_1986 -6.6 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_0967 -6.4 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5097 -6.4 -14.2 homoserine O-acetyltransferase compare
PP_5098 -6.4 -8.7 methionine biosynthesis protein MetW compare
PP_4724 -6.3 -4.4 Carbamoyl-phosphate synthase small chain compare
PP_4678 -6.3 -16.4 Ketol-acid reductoisomerase compare
PP_4680 -6.2 -14.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -6.2 -6.0 Ornithine carbamoyltransferase compare
PP_0691 -6.1 -4.2 Glutamate 5-kinase compare
PP_1995 -6.1 -7.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1231 -5.9 -7.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4364 -5.9 -7.6 putative Anti-sigma F factor antagonist compare
PP_5128 -5.8 -10.1 Dihydroxy-acid dehydratase compare
PP_0289 -5.7 -8.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5015 -5.7 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4723 -5.7 -9.5 Carbamoyl-phosphate synthase large chain compare
PP_4679 -5.7 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -5.5 -5.4 Acetylglutamate kinase compare
PP_0290 -5.5 -7.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0965 -5.5 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4909 -5.4 -9.8 phosphoserine phosphatase compare
PP_2168 -5.3 -13.2 Transaldolase compare
PP_2371 -5.2 -8.7 Sulphite reductase hemoprotein, beta subunit compare
PP_0083 -5.2 -3.6 tryptophan synthase beta chain compare
PP_5014 -5.2 -6.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1764 -5.1 -9.0 Phosphoglycolate phosphatase 2 compare
PP_4890 -5.0 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_3999 -5.0 -8.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_0417 -4.8 -18.5 Anthranilate synthase component 1 compare
PP_0421 -4.8 -8.3 Anthranilate phosphoribosyltransferase compare
PP_1088 -4.8 -12.0 Argininosuccinate synthase compare
PP_0406 -4.8 -5.5 Nucleotidyltransferase family protein compare
PP_5155 -4.7 -4.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0082 -4.6 -4.5 tryptophan synthase alpha chain compare
PP_5095 -4.5 -3.1 pyrroline-5-carboxylate reductase compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4999 -4.4 -3.0 dihydroorotase-like protein compare
PP_2327 -4.2 -7.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0292 -4.2 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5346 -3.8 -10.1 pyruvate carboxylase subunit B compare
PP_4696 -3.8 -3.7 Nitrogen regulation protein NR(I) compare
PP_5185 -3.7 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2370 -3.6 -4.9 conserved protein of unknown function compare
PP_4058 -3.6 -12.5 1,4-alpha-glucan branching enzyme compare
PP_5347 -3.6 -11.7 pyruvate carboxylase subunit A compare
PP_1215 -3.5 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_2868 -3.5 -9.2 Transcriptional regulator, Cro/CI family compare
PP_1025 -3.5 -11.8 2-isopropylmalate synthase compare
PP_0164 -3.4 -8.2 conserved protein of unknown function compare
PP_0339 -3.3 -6.6 Pyruvate dehydrogenase E1 component compare
PP_1362 -3.2 -5.3 pyruvate kinase II compare
PP_2433 -3.1 -4.0 conserved protein of unknown function compare
PP_0420 -3.0 -9.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1075 -2.9 -6.0 glycerol kinase compare
PP_4004 -2.7 -4.5 DNA translocase FtsK compare
PP_1654 -2.6 -4.0 cysteine synthase B compare
PP_1994 -2.6 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_4120 -2.6 -5.2 NADH-quinone oxidoreductase subunit B compare
PP_4700 -2.6 -2.5 pantothenate synthetase compare
PP_3484 -2.4 -5.8 Response regulator receiver protein compare
PP_5230 -2.3 -3.8 Tyrosine recombinase XerC compare
PP_5717 -2.3 -2.3 conserved protein of unknown function compare
PP_5348 -2.2 -9.5 Transcriptional regulator, LysR family compare
PP_5338 -2.2 -3.0 aspartate ammonia-lyase compare
PP_4782 -2.2 -5.4 Phosphomethylpyrimidine kinase compare
PP_1428 -2.1 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_1216 -2.1 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3649 -2.1 -4.8 Transcriptional regulator, GntR family compare
PP_0393 -2.1 -2.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2414 -1.9 -1.9 conserved exported protein of unknown function compare
PP_4699 -1.9 -4.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2402 -1.8 -2.5 putative Sensor histidine kinase compare
PP_0735 -1.8 -2.8 molybdopterin-synthase adenylyltransferase compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_5217 -1.8 -10.6 Polyphosphate kinase compare
PP_4701 -1.7 -1.8 glucose-6-phosphate isomerase compare
PP_4247 -1.7 -1.6 Exonuclease compare
PP_4124 -1.7 -4.0 NADH-quinone oxidoreductase subunit G compare
PP_4129 -1.7 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4342 -1.7 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_0405 -1.6 -11.8 conserved protein of unknown function compare
PP_5628 -1.6 -2.8 conserved protein of unknown function compare
PP_1355 -1.6 -13.7 Muropeptide permease AmpG compare
PP_5216 -1.6 -2.3 exopolyphosphatase compare
PP_1022 -1.5 -4.1 glucose 6-phosphate-1-dehydrogenase compare
PP_5104 -1.5 -5.3 thiazole synthase compare
PP_1493 -1.5 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_t12 -1.5 -1.6 tRNA-Thr compare
PP_1217 -1.5 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2145 -1.4 -5.9 beta-N-acetylglucosaminidase compare
PP_4943 -1.4 -2.5 putative Glycosyl transferase compare
PP_4131 -1.4 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_0434 -1.4 -6.8 Anhydro-N-acetylmuramic acid kinase compare
PP_3790 -1.4 -7.5 diaminopimelate epimerase compare
PP_2328 -1.4 -5.8 Phosphoadenosine phosphosulfate reductase compare
PP_1783 -1.4 -0.9 dTDP-glucose pyrophosphorylase compare
PP_5035 -1.4 -4.6 Histidine utilization repressor compare
PP_2336 -1.3 -3.1 aconitate hydratase 1 compare
PP_1426 -1.3 -7.7 L-aspartate oxidase compare
PP_0435 -1.3 -8.0 Peptidase, M23/M37 family compare
PP_1629 -1.3 -4.0 Protein RecA compare
PP_5350 -1.3 -2.3 Transcriptional regulator, RpiR family compare
PP_1734 -1.3 -2.1 Probable septum site-determining protein MinC compare
PP_3443 -1.3 -7.4 putative glyceraldehyde-3-phosphate dehydrogenase conserved
PP_1076 -1.3 -1.5 aquaglyceroporin compare
PP_2000 -1.3 -1.6 amidophosphoribosyl transferase compare
PP_5279 -1.2 -2.4 conserved protein of unknown function compare
PP_2388 -1.2 -3.0 Transporter, LysE family compare
PP_5008 -1.2 -1.1 Poly granule-associated protein compare
PP_0291 -1.2 -1.3 conserved protein of unknown function compare
PP_1233 -1.2 -3.4 sulfurtransferase compare
PP_5203 -1.2 -4.8 5-formyltetrahydrofolate cyclo-ligase compare
PP_0377 -1.2 -2.4 coenzyme PQQ synthesis protein D compare
PP_5303 -1.2 -4.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1733 -1.2 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4895 -1.2 -1.4 tRNA dimethylallyltransferase compare
PP_4060 -1.1 -8.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2087 -1.1 -2.3 CmpX protein compare
PP_5198 -1.1 -2.4 conserved protein of unknown function compare
PP_4009 -1.1 -3.4 ATP-dependent Clp protease adapter protein ClpS compare
PP_2044 -1.1 -2.4 conserved inner membrane protein of unknown function compare
PP_5161 -1.1 -5.8 putative lysophospholipase compare
PP_0276 -1.1 -1.3 Transcriptional regulator, Cro/CI family compare
PP_4130 -1.1 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0949 -1.0 -3.9 putative ATP-binding protein UPF0042 compare
PP_2337 -1.0 -1.9 aconitate isomerase compare
PP_4695 -1.0 -5.0 Sensory box histidine kinase compare
PP_0986 -1.0 -3.7 aminomethyltransferase compare
PP_2568 -1.0 -1.3 Ring-cleaving dioxygenase compare
PP_5114 -1.0 -1.7 putative adenine methyltransferase compare
PP_0593 -1.0 -1.2 putative ribosome-binding factor compare
PP_0855 -1.0 -1.3 conserved protein of unknown function compare
PP_1789 -1.0 -2.9 Hydrolase, haloacid dehalogenase-like family compare
PP_4808 -1.0 -2.1 23S rRNA m3psi1915 methyltransferase compare
PP_1122 -0.9 -2.4 OmpA family protein compare
PP_0914 -0.9 -6.5 GGDEF domain protein compare
PP_0261 -0.9 -4.8 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4922 -0.9 -5.3 Phosphomethylpyrimidine synthase compare
PP_5583 -0.9 -1.9 conserved protein of unknown function compare
PP_3603 -0.9 -4.0 Transcriptional regulator, GntR family compare
PP_0653 -0.9 -1.3 conserved protein of unknown function compare
PP_2070 -0.9 -1.8 Transcriptional regulator, AraC family compare
PP_2737 -0.9 -1.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3198 -0.9 -2.5 Ferredoxin, 2Fe-2S compare
PP_3903 -0.9 -1.6 conserved protein of unknown function compare
PP_2747 -0.9 -2.0 conserved protein of unknown function compare
PP_1679 -0.8 -2.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_5229 -0.8 -2.6 conserved protein of unknown function compare
PP_5295 -0.8 -1.8 conserved protein of unknown function compare
PP_4271 -0.8 -1.0 conserved protein of unknown function compare
PP_0988 -0.8 -6.0 glycine dehydrogenase compare
PP_3951 -0.8 -3.5 3-oxoadipate CoA-transferase subunit A compare
PP_4199 -0.8 -1.3 putative Lipoprotein compare
PP_2640 -0.8 -2.5 Acetyltransferase, GNAT family compare
PP_2345 -0.8 -2.7 conserved exported protein of unknown function compare
PP_2152 -0.8 -2.1 glycerophosphoryl diester phosphodiesterase compare
PP_0962 -0.8 -2.0 toluene-tolerance protein compare
PP_2899 -0.8 -1.3 conserved exported protein of unknown function compare
PP_1826 -0.8 -2.0 Hydrolase, isochorismatase family compare
PP_1348 -0.8 -3.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2137 -0.8 -2.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_1675 -0.8 -4.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1589 -0.8 -4.7 uridylyltransferase compare
PP_3105 -0.8 -1.6 conserved membrane protein of unknown function compare
PP_1824 -0.8 -1.5 Smr domain protein compare
PP_4122 -0.8 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5SB -0.8 -2.1 5S ribosomal RNA compare
PP_5090 -0.8 -1.5 putative cell division protein compare
PP_2107 -0.7 -1.3 conserved protein of unknown function compare
PP_0362 -0.7 -5.4 Biotin synthase compare
PP_3328 -0.7 -1.9 putative Ring-cleaving dioxygenase compare
PP_4874 -0.7 -0.5 50S ribosomal protein L9 compare
PP_4358 -0.7 -4.0 flagellar synthesis, switching and energizing component compare
PP_4362 -0.7 -1.8 conserved protein of unknown function compare
PP_4828 -0.7 -1.0 Precorrin-8X methylmutase compare
PP_1026 -0.7 -2.6 Peptidase, M23/M37 family compare
PP_2928 -0.7 -4.0 Saccharopine dehydrogenase compare
PP_1941 -0.7 -3.0 conserved protein of unknown function compare
PP_5047 -0.7 -2.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1346 -0.7 -3.3 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_3883 -0.7 -1.4 putative Phage holin compare
PP_5039 -0.7 -1.2 conserved protein of unknown function compare
PP_1054 -0.7 -1.7 Type II secretion pathway protein XcpZ compare
PP_2088 -0.7 -1.5 RNA polymerase sigma factor SigX compare
PP_0997 -0.7 -3.4 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_2132 -0.7 -1.6 Universal stress protein compare
PP_2136 -0.7 -1.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5073 -0.7 -1.2 conserved exported protein of unknown function compare
PP_0834 -0.6 -1.4 Sec translocation complex subunit YajC compare
PP_3014 -0.6 -2.5 conserved exported protein of unknown function compare
PP_1038 -0.6 -1.4 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Pseudomonas putida KT2440

For carbon source Glycerol across organisms