Experiment set12IT021 for Agrobacterium fabrum C58

Compare to:

Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu8087 -3.5 -2.2 putative peptidoglycan binding protein compare
Atu2125 -3.4 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0141 -2.8 -2.7 cytochrome O ubiquinol oxidase subunit I compare
Atu0086 -2.7 -2.4 ribosome-binding factor A compare
Atu0331 -2.4 -4.3 sigma-54 modulation protein compare
Atu0769 -2.4 -2.6 protoheme IX farnesyltransferase compare
Atu1417 -2.2 -6.7 enoyl-CoA hydratase compare
Atu3469 -2.1 -3.4 phosphoglyceromutase compare
Atu3712 -2.0 -1.7 hypothetical protein compare
Atu0041 -2.0 -2.7 glutamine amidotransferase compare
Atu3763 -2.0 -1.9 hypothetical protein compare
Atu4317 -1.9 -4.3 TetR family transcriptional regulator compare
Atu0361 -1.8 -3.8 transcriptional regulator compare
Atu0486 -1.8 -4.0 dihydroorotate dehydrogenase compare
Atu1163 -1.7 -2.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4217 -1.7 -1.7 TetR family transcriptional regulator compare
Atu4618 -1.7 -10.6 dTDP-rhamnose-3,5-epimerase compare
Atu0399 -1.7 -5.4 dihydroorotase compare
Atu1364 -1.7 -5.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2728 -1.6 -4.0 beta (1-->2) glucan export ATP-binding protein compare
Atu2554 -1.6 -3.2 lysyl-tRNA synthetase compare
Atu0976 -1.6 -2.2 cycL protein compare
Atu0895 -1.6 -3.5 ABC transporter, substrate binding protein compare
Atu3730 -1.6 -1.5 hypothetical protein compare
Atu2183 -1.6 -5.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1308 -1.6 -5.6 aspartate carbamoyl transferase catalytic subunit compare
Atu3353 -1.6 -9.3 mannose-1-phosphate guanylyltransferase compare
Atu8191 -1.6 -2.6 hypothetical protein compare
Atu6098 -1.5 -1.3 transcriptional regulator, HTH family compare
Atu8162 -1.5 -2.0 hypothetical protein compare
Atu1810 -1.4 -1.5 hypothetical protein compare
Atu0149 -1.4 -3.0 enoyl-(acyl-carrier-protein) reductase compare
Atu4615 -1.4 -6.8 glucose-1-phosphate thymidylyltransferase compare
Atu3598 -1.3 -1.6 thiol:disulfide interchange protein compare
Atu4614 -1.3 -6.5 glycosyltransferase compare
Atu1307 -1.3 -3.7 dihydroorotase compare
Atu0039 -1.3 -2.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu2684 -1.3 -1.8 hypothetical protein compare
Atu4617 -1.3 -7.0 dTDP-D-glucose-4,6-dehydratase compare
Atu2207 -1.3 -2.7 two component sensor kinase compare
Atu0029 -1.3 -4.1 S-adenosylhomocysteine hydrolase compare
Atu4613 -1.3 -8.4 glycosyltransferase compare
Atu3311 -1.2 -9.0 phosphomannose isomerase compare
Atu2057 -1.2 -2.1 DNA helicase II compare
Atu0421 -1.2 -1.7 ABC transporter, membrane spanning protein compare
Atu0184 -1.2 -2.6 glucokinase compare
Atu2831 -1.2 -4.7 glucose inhibited division protein A compare
Atu3012 -1.2 -1.5 hypothetical protein compare
Atu3908 -1.1 -6.8 GntR family transcriptional regulator compare
Atu8167 -1.1 -6.5 putative transmembrane protein compare
Atu0050 -1.1 -3.2 two component response regulator compare
Atu6189 -1.1 -1.7 protein secretion chaperone compare
Atu1902 -1.1 -5.0 transketolase compare
Atu5430 -1.1 -1.7 hypothetical protein compare
Atu1513 -1.1 -4.6 ABC excinuclease subunit A compare
Atu0043 -1.1 -1.4 imidazoleglycerol-phosphate dehydratase compare
Atu1359 -1.0 -1.1 dnaK deletion suppressor protein compare
Atu0971 -1.0 -2.6 two component sensor kinase compare
Atu1644 -1.0 -2.5 hypothetical protein compare
Atu0977 -1.0 -3.5 serine protease DO-like protease compare
Atu0298 -1.0 -4.3 orotidine 5 compare
Atu3009 -1.0 -0.8 exopolysaccharide production protein compare
Atu2289 -1.0 -6.8 anthranilate synthase component I and II compare
Atu1225 -1.0 -1.8 hypothetical protein compare
Atu1874 -0.9 -2.5 RecA protein compare
Atu0723 -0.9 -1.5 FAD dependent oxidoreductase compare
Atu1588 -0.9 -4.4 homoserine dehydrogenase compare
Atu5115 -0.9 -1.2 hypothetical protein compare
Atu8138 -0.9 -1.6 hypothetical protein compare
Atu3755 -0.9 -3.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2832 -0.9 -2.4 tRNA modification GTPase compare
Atu1021 -0.9 -2.2 outer membrane protein compare
Atu4616 -0.9 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu2201 -0.9 -1.8 hydrolase compare
Atu0040 -0.8 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu5451 -0.8 -1.3 hypothetical protein compare
Atu1468 -0.8 -4.7 hypothetical protein compare
Atu2824 -0.8 -2.5 hypothetical protein compare
Atu0031 -0.8 -1.1 PTS system, IIA component compare
Atu2555 -0.8 -2.5 L-lysine 2,3-aminomutase compare
Atu2073 -0.8 -2.8 membrane protein compare
Atu4290 -0.8 -1.1 hypothetical protein compare
Atu0230 -0.8 -1.6 hypothetical protein compare
Atu3707 -0.8 -1.9 phosphoserine aminotransferase compare
Atu4610 -0.8 -5.2 sugar nucleotide epimerase/dehydratase compare
Atu3468 -0.8 -0.8 hypothetical protein compare
Atu1527 -0.8 -3.3 nitrogen fixation protein FixS compare
Atu0269 -0.8 -2.7 exodeoxyribonuclease VII large subunit compare
Atu3739 -0.8 -1.6 phosphoglycerate kinase compare
Atu1327 -0.8 -1.8 NADH-ubiquinone oxidoreductase compare
Atu4166 -0.8 -1.0 UDP-glucose 4-epimerase compare
Atu1140 -0.8 -2.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0876 -0.8 -1.2 superoxide dismutase compare
Atu2650 -0.8 -4.3 glycerol-3-phosphate dehydrogenase compare
Atu4072 -0.8 -1.4 nodulation protein N compare
Atu1469 -0.8 -1.7 hypothetical protein compare
Atu0400 -0.8 -2.5 orotate phosphoribosyltransferase compare
Atu2052 -0.7 -3.1 hypothetical protein compare
Atu4890 -0.7 -1.4 IS426 transposase compare
Atu3754 -0.7 -4.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2239 -0.7 -2.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1449 -0.7 -3.0 potassium uptake protein compare
Atu1204 -0.7 -3.0 potassium uptake protein compare
Atu2484 -0.7 -1.4 hypothetical protein compare
Atu1173 -0.7 -4.1 MFS permease compare
Atu4897 -0.7 -1.2 hypothetical protein compare
Atu2662 -0.7 -1.1 acetyltransferase compare
Atu4346 -0.7 -3.1 hypothetical protein compare
Atu0434 -0.7 -1.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1537 -0.7 -5.4 cytochrome-c oxidase, FixN chain compare
Atu3017 -0.7 -1.0 phosphoglyceromutase compare
Atu4711 -0.7 -2.5 two component sensor kinase compare
Atu1739 -0.7 -2.1 permease compare
Atu2237 -0.7 -2.7 cytochrome c1 compare
Atu1705 -0.7 -2.3 SEC-independent protein translocase protein compare
Atu1229 -0.7 -2.1 hypothetical protein compare
Atu1536 -0.7 -2.0 cytochrome C oxidase, FixO chain compare
Atu0340 -0.7 -1.7 SAM dependent methyltransferase compare
Atu0912 -0.7 -0.8 Na+/H+ antiporter compare
Atu3496 -0.7 -2.8 hypothetical protein compare
Atu3013 -0.7 -2.7 hypothetical protein compare
Atu0962 -0.7 -3.0 hypothetical protein compare
Atu8202 -0.7 -2.3 hypothetical protein compare
Atu0972 -0.7 -2.7 lipA protein compare
Atu2379 -0.7 -4.1 phosphomannomutase compare
Atu1850 -0.7 -2.2 phosphoribosylformylglycinamidine synthetase II compare
Atu1677 -0.7 -2.6 queuine tRNA-ribosyltransferase compare
Atu0188 -0.7 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0978 -0.7 -3.3 two component response regulator compare
Atu2376 -0.6 -1.1 hypothetical protein compare
Atu0784 -0.6 -2.1 hypothetical protein compare
Atu1679 -0.6 -1.4 peptidyl prolyl cis-trans isomerase compare
Atu8145 -0.6 -1.3 hypothetical protein compare
Atu2286 -0.6 -1.3 hypothetical protein compare
Atu0280 -0.6 -1.5 hypothetical protein compare
Atu3706 -0.6 -3.3 D-3-phosphoglycerate dehydrogenase compare
Atu1602 -0.6 -2.9 transcriptional activator, Crp family compare
Atu0026 -0.6 -0.8 hypothetical protein compare
Atu2615 -0.6 -3.1 hypothetical protein compare
Atu4888 -0.6 -2.7 hypothetical protein compare
Atu1075 -0.6 -3.5 amidophosphoribosyltransferase compare
Atu1528 -0.6 -4.1 nitrogen fixation protein FixI compare
Atu2808 -0.6 -3.1 cobyric acid synthase compare
Atu0038 -0.6 -2.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2028 -0.6 -1.8 transcriptional regulator, ArsR family compare
Atu4884 -0.6 -2.0 hypothetical protein compare
Atu1645 -0.6 -3.8 ABC transporter, substrate binding protein compare
Atu3732 -0.6 -4.0 hemolysin compare
Atu0099 -0.6 -3.9 prephenate dehydratase compare
Atu0051 -0.6 -2.7 two component sensor kinase compare
Atu4200 -0.6 -1.2 hypothetical protein compare
Atu1184 -0.6 -2.1 hypothetical protein compare
Atu2649 -0.6 -2.3 hypothetical protein compare
Atu0659 -0.6 -2.4 NTP pyrophosphohydrolase, MutT family compare
Atu0422 -0.6 -1.2 ABC transporter, membrane spanning protein compare
Atu2235 -0.6 -1.7 hypothetical protein compare
Atu1530 -0.6 -4.3 nitrogen fixation protein FixG compare
Atu1039 -0.6 -2.4 DNA repair protein RecO compare
Atu8056 -0.6 -0.8 hypothetical protein compare
Atu2036 -0.6 -4.5 acetolactate synthase III, large subunit compare
Atu2616 -0.6 -2.6 hypothetical protein compare
Atu2238 -0.6 -2.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2169 -0.6 -2.8 hypothetical protein compare
Atu4226 -0.6 -2.8 transcriptional regulator compare
Atu1838 -0.6 -2.0 ABC transporter, substrate binding protein (amino acid) compare
Atu1891 -0.6 -1.6 cobalamin biosynthesis protein compare
Atu5443 -0.6 -2.5 TetR family transcriptional regulator compare
Atu4502 -0.6 -3.3 cobalamin synthesis protein compare
Atu1994 -0.6 -2.2 acyl-CoA hydrolase compare
Atu0894 -0.6 -1.1 ABC transporter, membrane spanning protein compare
Atu5125 -0.6 -2.1 GntR family transcriptional regulator compare
Atu3667 -0.5 -2.3 aspartate alpha-decarboxylase compare
Atu4148 -0.5 -2.9 UDP-glucuronic acid epimerase compare
Atu0938 -0.5 -1.3 transcriptional regulator, MerR family compare
Atu4362 -0.5 -2.8 hypothetical protein compare
Atu2640 -0.5 -1.7 hypothetical protein compare
Atu6186 -0.5 -2.3 virA/G regulated protein compare
Atu3246 -0.5 -2.7 amino acid ABC transporter substrate-binding protein compare
Atu2040 -0.5 -2.0 phosphoserine phosphatase compare
Atu0904 -0.5 -1.4 hypothetical protein compare
Atu0923 -0.5 -2.6 hypothetical protein compare
Atu2532 -0.5 -1.6 transcriptional regulator, MarR family compare
Atu2799 -0.5 -2.3 precorrin-6x reductase compare
Atu0647 -0.5 -2.0 phosphoribosylamine--glycine ligase compare
Atu2184 -0.5 -2.8 transcriptional regulator, AsnC family compare
Atu0845 -0.5 -1.9 hypothetical protein compare
Atu1619 -0.5 -1.4 protein-export membrane protein SECG compare
Atu0030 -0.5 -0.9 phosphocarrier protein HPr compare
Atu4609 -0.5 -3.8 glycosyltransferase compare
Atu0846 -0.5 -1.5 transcriptional regulator, MarR family compare
Atu1534 -0.5 -3.0 cytochrome-c oxidase, FixP chain compare
Atu1774 -0.5 -2.5 ABC transporter, substrate binding protein (peptide) compare
Atu5123 -0.5 -4.1 acetolactate synthase catalytic subunit compare
Atu3911 -0.5 -1.6 hypothetical protein compare
Atu4435 -0.5 -1.9 oligopeptide ABC transporter ATPase compare
Atu4328 -0.5 -1.8 hypothetical protein compare
Atu2825 -0.5 -3.0 Sun protein compare
Atu1475 -0.5 -1.2 hypothetical protein compare
Atu0101 -0.5 -1.3 cytochrome c compare
Atu1682 -0.5 -2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms