Experiment set12IT020 for Pseudomonas putida KT2440

Compare to:

Delta-Decalactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_1328 -6.9 -4.2 Protein MraZ compare
PP_4679 -6.2 -6.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -6.1 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -6.1 -5.5 Indole-3-glycerol phosphate synthase compare
PP_0967 -5.6 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -5.2 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5014 -5.2 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4994 -5.0 -4.9 conserved protein of unknown function compare
PP_0691 -5.0 -4.9 Glutamate 5-kinase compare
PP_0962 -5.0 -3.4 toluene-tolerance protein compare
PP_1985 -4.9 -7.5 3-isopropylmalate dehydratase large subunit compare
PP_2136 -4.9 -3.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1088 -4.8 -9.8 Argininosuccinate synthase compare
PP_4532 -4.8 -3.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1386 -4.8 -11.1 Probable efflux pump periplasmic linker TtgA compare
PP_0966 -4.7 -10.5 Histidinol dehydrogenase compare
PP_4723 -4.6 -12.0 Carbamoyl-phosphate synthase large chain compare
PP_0292 -4.5 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4890 -4.5 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5098 -4.5 -9.8 methionine biosynthesis protein MetW compare
PP_0082 -4.5 -3.1 tryptophan synthase alpha chain compare
PP_1385 -4.5 -15.8 Probable efflux pump membrane transporter TtgB compare
PP_0417 -4.5 -15.6 Anthranilate synthase component 1 compare
PP_4122 -4.4 -3.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0083 -4.4 -5.2 tryptophan synthase beta chain compare
PP_1079 -4.3 -7.3 Ornithine carbamoyltransferase compare
PP_5185 -4.3 -6.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3511 -4.3 -10.0 Branched-chain-amino-acid aminotransferase compare
PP_0289 -4.3 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_2327 -4.2 -7.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4724 -4.2 -7.5 Carbamoyl-phosphate synthase small chain compare
PP_0767 -4.2 -9.1 Transcriptional regulator, LuxR family compare
PP_0547 -4.1 -6.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2168 -4.1 -11.7 Transaldolase compare
PP_4678 -4.1 -13.2 Ketol-acid reductoisomerase compare
PP_4799 -4.0 -2.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0290 -4.0 -6.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -4.0 -13.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1654 -4.0 -2.8 cysteine synthase B compare
PP_5095 -4.0 -2.7 pyrroline-5-carboxylate reductase compare
PP_2001 -4.0 -8.9 O-succinylhomoserine sulfhydrylase compare
PP_4116 -4.0 -10.7 isocitrate lyase compare
PP_0406 -3.9 -5.4 Nucleotidyltransferase family protein compare
PP_4999 -3.9 -2.7 dihydroorotase-like protein compare
PP_4943 -3.9 -2.7 putative Glycosyl transferase compare
PP_1384 -3.9 -7.6 Probable efflux pump outer membrane protein TtgC compare
PP_4699 -3.8 -3.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4120 -3.8 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_3649 -3.8 -5.7 Transcriptional regulator, GntR family compare
PP_0368 -3.8 -10.7 putative Acyl-CoA dehydrogenase compare
PP_1232 -3.7 -9.1 conserved exported protein of unknown function compare
PP_2436 -3.7 -6.5 Transcriptional regulator, LysR family compare
PP_5128 -3.7 -7.4 Dihydroxy-acid dehydratase compare
PP_5659 -3.7 -3.0 protein of unknown function compare
PP_1988 -3.7 -9.6 3-isopropylmalate dehydrogenase compare
PP_1986 -3.7 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_0965 -3.6 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -3.6 -10.8 homoserine O-acetyltransferase compare
PP_1231 -3.5 -6.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0356 -3.5 -7.3 malate synthase G compare
PP_4342 -3.5 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_3925 -3.4 -10.8 conserved protein of unknown function compare
PP_5104 -3.3 -6.7 thiazole synthase compare
PP_0961 -3.3 -7.5 toluene tolerance protein compare
PP_1233 -3.3 -5.9 sulfurtransferase compare
PP_0735 -3.3 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_2163 -3.3 -7.2 VacJ lipoprotein compare
PP_2903 -3.3 -2.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0184 -3.2 -5.8 Argininosuccinate lyase compare
PP_2370 -3.2 -3.9 conserved protein of unknown function compare
PP_2337 -3.2 -2.2 aconitate isomerase compare
PP_0960 -3.2 -5.1 phospholipid ABC transporter binding protein compare
PP_4131 -3.2 -6.0 NADH-quinone oxidoreductase subunit N compare
PP_5085 -3.1 -7.5 malic enzyme B compare
PP_0421 -3.1 -6.7 Anthranilate phosphoribosyltransferase compare
PP_1216 -3.0 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3999 -3.0 -9.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4004 -3.0 -3.6 DNA translocase FtsK compare
PP_4782 -3.0 -4.2 Phosphomethylpyrimidine kinase compare
PP_4124 -3.0 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_2371 -3.0 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3946 -3.0 -1.5 HTH-type transcriptional repressor NicR compare
PP_2328 -3.0 -5.7 Phosphoadenosine phosphosulfate reductase compare
PP_3923 -2.9 -6.4 Phosphoglycerate mutase compare
PP_2356 -2.9 -10.5 putative Phytochrome family protein compare
PP_4126 -2.9 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_4948 -2.8 -9.1 Acyl-CoA dehydrogenase family protein compare
PP_4008 -2.8 -8.0 ATP-dependent serine protease compare
PP_4121 -2.8 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_5015 -2.7 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2214 -2.7 -5.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0653 -2.7 -1.6 conserved protein of unknown function compare
PP_4058 -2.7 -9.0 1,4-alpha-glucan branching enzyme compare
PP_0763 -2.7 -7.9 Medium-chain-fatty-acid CoA ligase compare
PP_4129 -2.6 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4817 -2.5 -3.2 MaoC domain protein compare
PP_1941 -2.5 -5.6 conserved protein of unknown function compare
PP_1898 -2.5 -2.6 MotA/TolQ/ExbB proton channel family protein compare
PP_5289 -2.5 -3.3 Acetylglutamate kinase compare
PP_2137 -2.5 -2.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_5203 -2.4 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_2433 -2.4 -2.3 conserved protein of unknown function compare
PP_5216 -2.4 -2.3 exopolyphosphatase compare
PP_4937 -2.3 -3.5 toluene tolerance protein compare
PP_5109 -2.3 -4.8 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_0958 -2.3 -4.8 phospholipid ABC transporter ATP-binding subunit compare
PP_0997 -2.3 -7.0 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_4364 -2.3 -4.6 putative Anti-sigma F factor antagonist compare
PP_4909 -2.2 -8.0 phosphoserine phosphatase compare
PP_4271 -2.2 -1.4 conserved protein of unknown function compare
PP_0959 -2.2 -2.3 phospholipid ABC transporter compare
PP_3603 -2.2 -5.9 Transcriptional regulator, GntR family compare
PP_0989 -2.1 -3.1 glycine cleavage system H protein 1 compare
PP_1655 -2.1 -10.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3248 -2.1 -1.4 Dyp-type peroxidase family protein compare
PP_0832 -2.1 -2.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0988 -2.1 -9.3 glycine dehydrogenase compare
PP_0787 -2.1 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0766 -2.0 -9.9 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_1493 -2.0 -2.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2304 -2.0 -5.4 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_1733 -2.0 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_3484 -2.0 -4.0 Response regulator receiver protein compare
PP_1322 -2.0 -1.2 putative Lipoprotein compare
PP_4471 -2.0 -3.5 Magnesium transporter compare
PP_2132 -1.9 -4.3 Universal stress protein compare
PP_2019 -1.9 -10.5 adhesin-associated MmpL efflux pump (from data) compare
PP_4700 -1.9 -2.3 pantothenate synthetase compare
PP_5347 -1.9 -7.2 pyruvate carboxylase subunit A compare
PP_0938 -1.9 -6.3 conserved protein of unknown function compare
PP_4213 -1.9 -2.5 putative dipeptidase compare
PP_2348 -1.9 -3.8 Sensor histidine kinase compare
PP_2018 -1.9 -3.9 adhesin-associated BNR repeat protein (from data) compare
PP_4804 -1.9 -1.8 RlpA-like lipoprotein compare
PP_1187 -1.9 -5.0 sensor protein compare
PP_1355 -1.9 -12.3 Muropeptide permease AmpG compare
PP_4922 -1.8 -8.3 Phosphomethylpyrimidine synthase compare
PP_2354 -1.8 -7.6 Sensory box histidine kinase/response regulator compare
PP_4164 -1.8 -4.2 Alpha/beta hydrolase compare
PP_2299 -1.8 -3.1 Trigger factor compare
PP_2302 -1.8 -4.3 DNA-binding, ATP-dependent protease compare
PP_5331 -1.8 -4.1 Long-chain acyl-CoA thioester hydrolase compare
PP_4505 -1.7 -4.5 Sensor histidine kinase compare
PP_5035 -1.7 -4.1 Histidine utilization repressor compare
PP_3474 -1.7 -1.8 putative Curli fiber protein CsgE compare
PP_5352 -1.7 -7.2 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4130 -1.7 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2402 -1.7 -2.3 putative Sensor histidine kinase compare
PP_0852 -1.7 -2.5 Transcriptional regulator, Cro/CI family compare
PP_2335 -1.7 -8.4 methylcitrate synthase compare
PP_1860 -1.6 -2.9 Organic hydroperoxide resistance transcriptional regulator compare
PP_1025 -1.6 -5.6 2-isopropylmalate synthase compare
PP_0986 -1.6 -3.8 aminomethyltransferase compare
PP_4710 -1.6 -6.0 tRNA pseudouridine 55 synthase compare
PP_3300 -1.6 -7.6 Transcriptional regulator, tetR family compare
PP_2145 -1.6 -4.8 beta-N-acetylglucosaminidase compare
PP_4550 -1.6 -6.1 long-chain-fatty-acid/CoA ligase compare
PP_0872 -1.6 -4.6 Peptide chain release factor 3 compare
PP_2000 -1.6 -1.1 amidophosphoribosyl transferase compare
PP_2868 -1.6 -5.3 Transcriptional regulator, Cro/CI family compare
PP_5155 -1.5 -2.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4266 -1.5 -3.9 Adenine phosphoribosyltransferase compare
PP_1217 -1.5 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0995 -1.5 -5.2 conserved membrane protein of unknown function compare
PP_4482 -1.5 -2.7 Transcriptional regulator, AraC family compare
PP_0254 -1.5 -2.0 conserved protein of unknown function compare
PP_1568 -1.5 -1.2 conserved protein of unknown function compare
PP_0413 -1.5 -8.4 Polyamine ABC transporter, permease protein compare
PP_5346 -1.5 -5.0 pyruvate carboxylase subunit B compare
PP_0420 -1.4 -3.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4722 -1.4 -2.6 Transcription elongation factor GreA compare
PP_2336 -1.4 -2.5 aconitate hydratase 1 compare
PP_2806 -1.4 -3.1 Transcriptional regulator, TetR family compare
PP_0435 -1.4 -8.3 Peptidase, M23/M37 family compare
PP_1716 -1.4 -1.8 Transcriptional regulator, Cro/CI family compare
PP_3637 -1.4 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4880 -1.4 -6.3 exoribonuclease R compare
PP_3332 -1.4 -2.8 putative cytochrome c-type protein compare
PP_0248 -1.4 -6.9 Probable alpha-L-glutamate ligase compare
PP_2147 -1.4 -3.5 conserved exported protein of unknown function compare
PP_2320 -1.4 -7.0 conserved exported protein of unknown function compare
PP_2305 -1.3 -5.4 conserved protein of unknown function compare
PP_0833 -1.3 -0.9 queuine tRNA-ribosyltransferase compare
PP_0765 -1.3 -9.5 putative adhesin (DUF1302) (from data) compare
PP_1309 -1.3 -4.2 conserved exported protein of unknown function compare
PP_0887 -1.3 -4.2 Sensor histidine kinase compare
PP_3102 -1.3 -3.3 conserved protein of unknown function compare
PP_0434 -1.3 -6.3 Anhydro-N-acetylmuramic acid kinase compare
PP_2334 -1.3 -3.1 2-methylisocitrate lyase compare
PP_4696 -1.3 -2.7 Nitrogen regulation protein NR(I) compare
PP_5327 -1.3 -3.2 putative phosphate ABC transporter, permease subunit compare
PP_1381 -1.3 -1.1 4-carboxymuconolactone decarboxylase compare
PP_4060 -1.2 -7.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1301 -1.2 -5.3 quality control serine endoprotease DegS compare
PP_2013 -1.2 -3.8 conserved protein of unknown function compare
PP_1892 -1.2 -1.9 conserved protein of unknown function compare
PP_5329 -1.2 -2.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4754 -1.2 -5.3 Transcriptional regulator, TetR family compare
PP_1734 -1.2 -1.6 Probable septum site-determining protein MinC compare
PP_0063 -1.2 -1.4 putative Lipid A biosynthesis lauroyl acyltransferase compare


Specific Phenotypes

For 35 genes in this experiment

For carbon source Delta-Decalactone in Pseudomonas putida KT2440

For carbon source Delta-Decalactone across organisms