Experiment set12IT019 for Pseudomonas putida KT2440

Compare to:

Delta-Dodecalactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.3 -5.1 Indole-3-glycerol phosphate synthase compare
PP_0966 -6.5 -8.9 Histidinol dehydrogenase compare
PP_4678 -6.3 -13.4 Ketol-acid reductoisomerase compare
PP_2903 -6.2 -4.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1988 -6.1 -9.4 3-isopropylmalate dehydrogenase compare
PP_3511 -6.1 -9.3 Branched-chain-amino-acid aminotransferase compare
PP_0967 -6.1 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4679 -6.1 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -6.0 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_5014 -5.9 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_4909 -5.9 -7.0 phosphoserine phosphatase compare
PP_5015 -5.6 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2137 -5.6 -3.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_4680 -5.4 -15.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -5.3 -20.7 Anthranilate synthase component 1 compare
PP_5097 -5.3 -14.2 homoserine O-acetyltransferase compare
PP_0293 -5.1 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4890 -5.1 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0767 -5.0 -12.6 Transcriptional regulator, LuxR family compare
PP_2001 -5.0 -9.0 O-succinylhomoserine sulfhydrylase compare
PP_2019 -5.0 -16.9 adhesin-associated MmpL efflux pump (from data) compare
PP_5098 -5.0 -9.5 methionine biosynthesis protein MetW compare
PP_1995 -5.0 -8.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5155 -5.0 -6.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4723 -4.8 -10.3 Carbamoyl-phosphate synthase large chain compare
PP_2136 -4.8 -3.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0765 -4.7 -16.6 putative adhesin (DUF1302) (from data) compare
PP_4116 -4.7 -11.2 isocitrate lyase compare
PP_0164 -4.7 -9.0 conserved protein of unknown function compare
PP_5185 -4.7 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5289 -4.7 -5.6 Acetylglutamate kinase compare
PP_0292 -4.7 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1898 -4.5 -3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1079 -4.5 -6.8 Ornithine carbamoyltransferase compare
PP_5128 -4.5 -8.0 Dihydroxy-acid dehydratase compare
PP_2168 -4.5 -12.5 Transaldolase compare
PP_0965 -4.4 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4699 -4.4 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1384 -4.4 -7.9 Probable efflux pump outer membrane protein TtgC compare
PP_0368 -4.4 -11.6 putative Acyl-CoA dehydrogenase compare
PP_4724 -4.3 -7.7 Carbamoyl-phosphate synthase small chain compare
PP_0421 -4.3 -6.5 Anthranilate phosphoribosyltransferase compare
PP_2018 -4.2 -5.1 adhesin-associated BNR repeat protein (from data) compare
PP_4122 -4.2 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2327 -4.2 -6.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0083 -4.2 -5.0 tryptophan synthase beta chain compare
PP_4549 -4.2 -13.1 long-chain-fatty-acid/CoA ligase compare
PP_1088 -4.2 -11.1 Argininosuccinate synthase compare
PP_4817 -4.1 -4.2 MaoC domain protein compare
PP_0082 -4.1 -4.0 tryptophan synthase alpha chain compare
PP_0766 -4.1 -13.0 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_0356 -4.0 -7.4 malate synthase G compare
PP_1985 -3.9 -4.7 3-isopropylmalate dehydratase large subunit compare
PP_4058 -3.9 -13.4 1,4-alpha-glucan branching enzyme compare
PP_5095 -3.9 -2.7 pyrroline-5-carboxylate reductase compare
PP_0691 -3.9 -5.9 Glutamate 5-kinase compare
PP_0289 -3.8 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1654 -3.8 -2.6 cysteine synthase B compare
PP_3821 -3.8 -10.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0959 -3.8 -3.1 phospholipid ABC transporter compare
PP_4999 -3.8 -2.6 dihydroorotase-like protein compare
PP_4994 -3.8 -5.8 conserved protein of unknown function compare
PP_4943 -3.7 -2.6 putative Glycosyl transferase compare
PP_4940 -3.7 -9.8 Putative glycosyltransferase compare
PP_4364 -3.7 -4.0 putative Anti-sigma F factor antagonist compare
PP_4120 -3.6 -2.5 NADH-quinone oxidoreductase subunit B compare
PP_0184 -3.6 -4.9 Argininosuccinate lyase compare
PP_0290 -3.6 -6.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2433 -3.5 -3.7 conserved protein of unknown function compare
PP_3484 -3.5 -5.7 Response regulator receiver protein compare
PP_2402 -3.4 -3.7 putative Sensor histidine kinase compare
PP_4131 -3.4 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_4696 -3.4 -2.3 Nitrogen regulation protein NR(I) compare
PP_5659 -3.3 -5.9 protein of unknown function compare
PP_1355 -3.3 -15.5 Muropeptide permease AmpG compare
PP_4129 -3.2 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0434 -3.1 -8.5 Anhydro-N-acetylmuramic acid kinase compare
PP_0914 -3.1 -11.2 GGDEF domain protein compare
PP_4977 -3.1 -10.8 5,10-methylenetetrahydrofolate reductase compare
PP_0420 -2.9 -7.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0405 -2.9 -15.1 conserved protein of unknown function compare
PP_0787 -2.9 -2.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5007 -2.9 -3.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4799 -2.9 -3.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4695 -2.9 -10.1 Sensory box histidine kinase compare
PP_0406 -2.9 -5.8 Nucleotidyltransferase family protein compare
PP_1181 -2.8 -5.0 DNA-binding response regulator compare
PP_2806 -2.8 -5.4 Transcriptional regulator, TetR family compare
PP_2375 -2.7 -13.4 cobalamin-dependent methionine synthase compare
PP_1386 -2.7 -6.9 Probable efflux pump periplasmic linker TtgA compare
PP_4126 -2.7 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_4004 -2.7 -3.6 DNA translocase FtsK compare
PP_3999 -2.6 -8.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4121 -2.6 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_1493 -2.6 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4342 -2.6 -3.1 flagellar synthesis regulator, putative ATPase compare
PP_5203 -2.5 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_0901 -2.5 -7.1 DNA-binding response regulator compare
PP_2868 -2.5 -5.3 Transcriptional regulator, Cro/CI family compare
PP_1231 -2.5 -4.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4124 -2.5 -3.4 NADH-quinone oxidoreductase subunit G compare
PP_3649 -2.5 -5.0 Transcriptional regulator, GntR family compare
PP_2145 -2.4 -5.6 beta-N-acetylglucosaminidase compare
PP_0393 -2.4 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5008 -2.4 -2.4 Poly granule-associated protein compare
PP_0958 -2.3 -5.7 phospholipid ABC transporter ATP-binding subunit compare
PP_1025 -2.3 -8.7 2-isopropylmalate synthase compare
PP_4700 -2.3 -1.6 pantothenate synthetase compare
PP_0435 -2.3 -8.4 Peptidase, M23/M37 family compare
PP_5347 -2.2 -8.0 pyruvate carboxylase subunit A compare
PP_1999 -2.2 -2.5 membrane protein required for colicin V production compare
PP_1385 -2.2 -9.8 Probable efflux pump membrane transporter TtgB compare
PP_1468 -2.1 -2.1 Tyrosine recombinase XerD compare
PP_2328 -2.1 -5.7 Phosphoadenosine phosphosulfate reductase compare
PP_2356 -2.1 -9.0 putative Phytochrome family protein compare
PP_1826 -2.1 -2.5 Hydrolase, isochorismatase family compare
PP_4008 -2.0 -6.6 ATP-dependent serine protease compare
PP_2371 -2.0 -5.5 Sulphite reductase hemoprotein, beta subunit compare
PP_1941 -2.0 -5.3 conserved protein of unknown function compare
PP_1182 -2.0 -8.3 Sensor histidine kinase compare
PP_2302 -1.9 -4.3 DNA-binding, ATP-dependent protease compare
PP_5085 -1.9 -5.3 malic enzyme B compare
PP_4938 -1.9 -6.1 putative Glycosyl transferase compare
PP_1217 -1.9 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5346 -1.9 -6.4 pyruvate carboxylase subunit B compare
PP_2335 -1.9 -7.8 methylcitrate synthase compare
PP_2370 -1.8 -2.7 conserved protein of unknown function compare
PP_0961 -1.8 -5.2 toluene tolerance protein compare
PP_4701 -1.8 -1.5 glucose-6-phosphate isomerase compare
PP_4130 -1.8 -3.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2354 -1.8 -7.6 Sensory box histidine kinase/response regulator compare
PP_2087 -1.7 -1.7 CmpX protein compare
PP_0339 -1.7 -5.1 Pyruvate dehydrogenase E1 component compare
PP_3662 -1.7 -6.8 conserved protein of unknown function compare
PP_4591 -1.7 -3.5 Ribonuclease D compare
PP_2631 -1.6 -2.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0291 -1.6 -1.8 conserved protein of unknown function compare
PP_4532 -1.6 -1.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4482 -1.6 -3.7 Transcriptional regulator, AraC family compare
PP_1528 -1.6 -1.8 conserved protein of unknown function compare
PP_1734 -1.6 -2.1 Probable septum site-determining protein MinC compare
PP_0735 -1.5 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_0902 -1.5 -7.9 integral membrane sensor signal transduction histidine kinase compare
PP_0989 -1.5 -2.3 glycine cleavage system H protein 1 compare
PP_4936 -1.5 -4.3 O-antigen polymerase compare
PP_1233 -1.5 -4.3 sulfurtransferase compare
PP_5217 -1.5 -9.4 Polyphosphate kinase compare
PP_1629 -1.5 -4.1 Protein RecA compare
PP_0248 -1.5 -8.5 Probable alpha-L-glutamate ligase compare
PP_1678 -1.5 -2.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0997 -1.5 -6.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_4545 -1.5 -3.0 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_1428 -1.5 -1.0 Sigma factor AlgU negative regulatory protein compare
PP_0988 -1.5 -8.3 glycine dehydrogenase compare
PP_0789 -1.4 -6.0 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_1779 -1.4 -4.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4779 -1.4 -8.9 AMP nucleosidase compare
PP_0413 -1.4 -8.1 Polyamine ABC transporter, permease protein compare
PP_3474 -1.4 -2.0 putative Curli fiber protein CsgE compare
PP_2388 -1.4 -4.1 Transporter, LysE family compare
PP_4505 -1.4 -5.0 Sensor histidine kinase compare
PP_4902 -1.4 -2.0 Oligoribonuclease compare
PP_4880 -1.3 -5.9 exoribonuclease R compare
PP_2414 -1.3 -1.6 conserved exported protein of unknown function compare
PP_0852 -1.3 -2.3 Transcriptional regulator, Cro/CI family compare
PP_3102 -1.3 -3.1 conserved protein of unknown function compare
PP_0986 -1.3 -2.8 aminomethyltransferase compare
PP_3819 -1.3 -5.2 glutathione reductase (NADPH) compare
PP_4910 -1.3 -1.5 conserved protein of unknown function compare
PP_1681 -1.3 -6.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1672 -1.3 -3.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_5327 -1.3 -4.1 putative phosphate ABC transporter, permease subunit compare
PP_4362 -1.3 -2.8 conserved protein of unknown function compare
PP_4824 -1.3 -3.0 Sensor histidine kinase/response regulator compare
PP_5456 -1.3 -1.7 conserved protein of unknown function compare
PP_1215 -1.2 -1.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_1778 -1.2 -3.5 Lipopolysaccharide ABC export system, permease protein compare
PP_4340 -1.2 -2.5 response regulator for chemotactic signal transduction compare
PP_4826 -1.2 -4.1 Precorrin-3B C17-methyltransferase compare
PP_4143 -1.2 -2.7 conserved protein of unknown function compare
PP_2336 -1.2 -2.1 aconitate hydratase 1 compare
PP_2436 -1.2 -4.8 Transcriptional regulator, LysR family compare
PP_2160 -1.2 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_5348 -1.2 -4.9 Transcriptional regulator, LysR family compare
PP_3810 -1.2 -2.2 conserved protein of unknown function compare
PP_0960 -1.1 -3.0 phospholipid ABC transporter binding protein compare
PP_0001 -1.1 -1.5 probable chromosome-partitioning protein compare
PP_1309 -1.1 -6.8 conserved exported protein of unknown function compare
PP_0833 -1.1 -0.8 queuine tRNA-ribosyltransferase compare
PP_3519 -1.1 -1.3 putative Lipoprotein compare
PP_0414 -1.1 -2.0 Polyamine ABC transporter, permease protein compare
PP_5328 -1.1 -2.6 putative phosphate transport system permease protein compare
PP_1764 -1.1 -3.9 Phosphoglycolate phosphatase 2 compare
PP_2186 -1.1 -3.5 putative Formate dehydrogenase, delta subunit compare
PP_1317 -1.1 -4.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1804 -1.1 -7.3 Glycosyl transferase WbpL compare
PP_1800 -1.1 -6.5 Oxidoreductase Rmd compare
PP_1675 -1.1 -4.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5054 -1.1 -1.6 glutaredoxin 3 compare
PP_3637 -1.1 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare


Specific Phenotypes

For 22 genes in this experiment

For carbon source Delta-Dodecalactone in Pseudomonas putida KT2440

For carbon source Delta-Dodecalactone across organisms