Experiment set12IT018 for Pseudomonas putida KT2440

Compare to:

Delta-Undecalactone carbon source

200 most important genes:

  gene name fitness t score description  
PP_4890 -8.2 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0422 -7.9 -5.4 Indole-3-glycerol phosphate synthase compare
PP_0967 -7.7 -7.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2335 -7.5 -7.3 methylcitrate synthase compare
PP_0406 -7.5 -7.3 Nucleotidyltransferase family protein compare
PP_2433 -7.4 -5.1 conserved protein of unknown function compare
PP_4678 -7.4 -10.2 Ketol-acid reductoisomerase compare
PP_0966 -7.2 -8.6 Histidinol dehydrogenase compare
PP_3511 -7.2 -8.6 Branched-chain-amino-acid aminotransferase compare
PP_5015 -6.9 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0417 -6.8 -21.1 Anthranilate synthase component 1 compare
PP_2903 -6.7 -4.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1355 -6.7 -16.2 Muropeptide permease AmpG compare
PP_1986 -6.5 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_1941 -6.5 -7.8 conserved protein of unknown function compare
PP_0434 -6.5 -9.9 Anhydro-N-acetylmuramic acid kinase compare
PP_2168 -6.4 -8.8 Transaldolase compare
PP_4679 -6.4 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -6.4 -4.4 Acetylglutamate kinase compare
PP_4680 -6.3 -14.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -6.3 -4.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1385 -6.3 -15.7 Probable efflux pump membrane transporter TtgB compare
PP_1079 -6.2 -6.1 Ornithine carbamoyltransferase compare
PP_4723 -6.2 -4.3 Carbamoyl-phosphate synthase large chain compare
PP_1995 -6.2 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2145 -6.2 -9.5 beta-N-acetylglucosaminidase compare
PP_2436 -6.2 -9.5 Transcriptional regulator, LysR family compare
PP_5097 -6.2 -14.9 homoserine O-acetyltransferase compare
PP_5098 -6.2 -9.4 methionine biosynthesis protein MetW compare
PP_0767 -6.1 -12.5 Transcriptional regulator, LuxR family compare
PP_2137 -6.1 -4.2 beta-ketoadipyl CoA thiolase, beta component compare
PP_2327 -6.0 -4.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1988 -5.9 -11.3 3-isopropylmalate dehydrogenase compare
PP_0965 -5.9 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0290 -5.8 -6.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0421 -5.7 -10.1 Anthranilate phosphoribosyltransferase compare
PP_1985 -5.7 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_2001 -5.7 -13.1 O-succinylhomoserine sulfhydrylase compare
PP_0405 -5.7 -17.4 conserved protein of unknown function compare
PP_5014 -5.6 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_1088 -5.6 -8.5 Argininosuccinate synthase compare
PP_2334 -5.5 -8.4 2-methylisocitrate lyase compare
PP_4724 -5.5 -6.5 Carbamoyl-phosphate synthase small chain compare
PP_1386 -5.5 -11.1 Probable efflux pump periplasmic linker TtgA compare
PP_4994 -5.4 -5.3 conserved protein of unknown function compare
PP_4937 -5.3 -5.1 toluene tolerance protein compare
PP_4532 -5.2 -3.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0083 -5.2 -3.6 tryptophan synthase beta chain compare
PP_1898 -5.2 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1384 -5.2 -8.6 Probable efflux pump outer membrane protein TtgC compare
PP_0356 -5.2 -9.8 malate synthase G compare
PP_4699 -5.0 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0787 -5.0 -5.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0691 -4.9 -5.9 Glutamate 5-kinase compare
PP_3925 -4.9 -17.1 conserved protein of unknown function compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_2136 -4.8 -4.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4122 -4.8 -3.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5128 -4.8 -7.9 Dihydroxy-acid dehydratase compare
PP_0082 -4.6 -4.5 tryptophan synthase alpha chain compare
PP_0368 -4.5 -12.1 putative Acyl-CoA dehydrogenase compare
PP_0292 -4.5 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1231 -4.5 -7.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4116 -4.5 -13.2 isocitrate lyase compare
PP_5095 -4.5 -3.1 pyrroline-5-carboxylate reductase compare
PP_5347 -4.5 -14.0 pyruvate carboxylase subunit A compare
PP_4909 -4.4 -10.4 phosphoserine phosphatase compare
PP_4799 -4.4 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0289 -4.4 -7.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4999 -4.3 -3.0 dihydroorotase-like protein compare
PP_2031 -4.3 -3.4 conserved protein of unknown function compare
PP_5346 -4.3 -11.7 pyruvate carboxylase subunit B compare
PP_4131 -4.2 -4.1 NADH-quinone oxidoreductase subunit N compare
PP_0765 -4.1 -18.7 putative adhesin (DUF1302) (from data) compare
PP_0435 -4.1 -10.0 Peptidase, M23/M37 family compare
PP_0547 -4.0 -6.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_3999 -4.0 -10.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4120 -3.9 -3.8 NADH-quinone oxidoreductase subunit B compare
PP_0293 -3.9 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4342 -3.8 -2.6 flagellar synthesis regulator, putative ATPase compare
PP_2868 -3.8 -7.5 Transcriptional regulator, Cro/CI family compare
PP_4696 -3.8 -3.7 Nitrogen regulation protein NR(I) compare
PP_0901 -3.8 -7.3 DNA-binding response regulator compare
PP_2019 -3.8 -14.4 adhesin-associated MmpL efflux pump (from data) compare
PP_0766 -3.7 -16.8 adhesin-associated sorting protein (DUF1329) (from data) compare
PP_4008 -3.7 -9.4 ATP-dependent serine protease compare
PP_1328 -3.6 -3.5 Protein MraZ compare
PP_4817 -3.5 -4.8 MaoC domain protein compare
PP_2371 -3.5 -8.2 Sulphite reductase hemoprotein, beta subunit compare
PP_1215 -3.5 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4129 -3.5 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5155 -3.5 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0986 -3.5 -7.3 aminomethyltransferase compare
PP_3649 -3.5 -5.2 Transcriptional regulator, GntR family compare
PP_4695 -3.5 -11.5 Sensory box histidine kinase compare
PP_2018 -3.4 -6.0 adhesin-associated BNR repeat protein (from data) compare
PP_0164 -3.4 -10.5 conserved protein of unknown function compare
PP_3821 -3.4 -11.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2806 -3.4 -5.2 Transcriptional regulator, TetR family compare
PP_0852 -3.4 -4.6 Transcriptional regulator, Cro/CI family compare
PP_4058 -3.4 -13.2 1,4-alpha-glucan branching enzyme compare
PP_5338 -3.3 -2.3 aspartate ammonia-lyase compare
PP_0370 -3.3 -16.5 Acyl-CoA dehydrogenase family protein compare
PP_2402 -3.3 -4.2 putative Sensor histidine kinase compare
PP_1233 -3.3 -7.1 sulfurtransferase compare
PP_4126 -3.3 -2.2 NADH-quinone oxidoreductase subunit I compare
PP_4124 -3.3 -3.2 NADH-quinone oxidoreductase subunit G compare
PP_1216 -3.2 -3.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0339 -3.2 -6.7 Pyruvate dehydrogenase E1 component compare
PP_4130 -3.1 -6.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4943 -3.1 -3.0 putative Glycosyl transferase compare
PP_2328 -3.1 -9.0 Phosphoadenosine phosphosulfate reductase compare
PP_2302 -3.1 -4.7 DNA-binding, ATP-dependent protease compare
PP_4098 -3.0 -4.1 UvrABC system protein C compare
PP_2378 -3.0 -2.9 Fe/S biogenesis protein NfuA compare
PP_3474 -3.0 -3.2 putative Curli fiber protein CsgE compare
PP_5348 -3.0 -8.8 Transcriptional regulator, LysR family compare
PP_4782 -2.9 -5.0 Phosphomethylpyrimidine kinase compare
PP_4700 -2.9 -2.0 pantothenate synthetase compare
PP_1309 -2.9 -9.6 conserved exported protein of unknown function compare
PP_1654 -2.8 -3.9 cysteine synthase B compare
PP_5104 -2.8 -9.4 thiazole synthase compare
PP_5659 -2.8 -5.3 protein of unknown function compare
PP_2403 -2.8 -3.1 Chemotaxis protein CheY compare
PP_1493 -2.7 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0763 -2.7 -10.7 Medium-chain-fatty-acid CoA ligase compare
PP_2337 -2.7 -3.1 aconitate isomerase compare
PP_0888 -2.6 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0789 -2.6 -7.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4004 -2.6 -4.3 DNA translocase FtsK compare
PP_5203 -2.6 -8.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_0938 -2.6 -7.4 conserved protein of unknown function compare
PP_4121 -2.6 -5.4 NADH-quinone oxidoreductase subunit C/D compare
PP_2336 -2.6 -2.5 aconitate hydratase 1 compare
PP_0413 -2.5 -12.5 Polyamine ABC transporter, permease protein compare
PP_2375 -2.5 -13.1 cobalamin-dependent methionine synthase compare
PP_4271 -2.5 -1.7 conserved protein of unknown function compare
PP_1187 -2.5 -5.9 sensor protein compare
PP_2163 -2.4 -7.9 VacJ lipoprotein compare
PP_5114 -2.4 -2.8 putative adenine methyltransferase compare
PP_2356 -2.4 -11.9 putative Phytochrome family protein compare
PP_4172 -2.3 -7.3 conserved exported protein of unknown function compare
PP_4804 -2.3 -2.2 RlpA-like lipoprotein compare
PP_0960 -2.3 -5.1 phospholipid ABC transporter binding protein compare
PP_3603 -2.2 -6.6 Transcriptional regulator, GntR family compare
PP_0961 -2.2 -6.1 toluene tolerance protein compare
PP_0420 -2.2 -4.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0362 -2.2 -11.6 Biotin synthase compare
PP_4779 -2.2 -13.6 AMP nucleosidase compare
PP_4977 -2.1 -11.4 5,10-methylenetetrahydrofolate reductase compare
PP_2160 -2.1 -4.6 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_0988 -2.1 -11.5 glycine dehydrogenase compare
PP_0414 -2.1 -7.3 Polyamine ABC transporter, permease protein compare
PP_4993 -2.1 -3.7 Glutathione synthetase compare
PP_2370 -2.1 -3.3 conserved protein of unknown function compare
PP_1428 -2.1 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_1734 -2.0 -2.0 Probable septum site-determining protein MinC compare
PP_0735 -2.0 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_1430 -2.0 -9.3 putative periplasmic serine endoprotease DegP-like compare
PP_4948 -2.0 -9.8 Acyl-CoA dehydrogenase family protein compare
PP_5331 -2.0 -6.0 Long-chain acyl-CoA thioester hydrolase compare
PP_5350 -2.0 -3.0 Transcriptional regulator, RpiR family compare
PP_4482 -2.0 -3.9 Transcriptional regulator, AraC family compare
PP_4173 -2.0 -9.8 Sensor histidine kinase/response regulator compare
PP_5035 -1.9 -6.2 Histidine utilization repressor compare
PP_1733 -1.9 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_4722 -1.9 -5.3 Transcription elongation factor GreA compare
PP_1999 -1.9 -2.2 membrane protein required for colicin V production compare
PP_0997 -1.9 -7.5 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_1232 -1.8 -7.6 conserved exported protein of unknown function compare
PP_0248 -1.8 -10.7 Probable alpha-L-glutamate ligase compare
PP_0065 -1.8 -3.0 NAD-binding component of TrK potassium transporter compare
PP_1764 -1.8 -6.0 Phosphoglycolate phosphatase 2 compare
PP_4922 -1.8 -9.6 Phosphomethylpyrimidine synthase compare
PP_0833 -1.7 -1.2 queuine tRNA-ribosyltransferase compare
PP_0958 -1.7 -5.4 phospholipid ABC transporter ATP-binding subunit compare
PP_0902 -1.7 -6.9 integral membrane sensor signal transduction histidine kinase compare
PP_2818 -1.7 -11.9 Multidrug efflux RND transporter MexD compare
PP_3833 -1.7 -4.7 Response regulator compare
PP_1025 -1.7 -4.1 2-isopropylmalate synthase compare
PP_0363 -1.7 -9.6 8-amino-7-oxononanoate synthase compare
PP_5007 -1.6 -1.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0003 -1.6 -3.6 16S RNA methyltransferase compare
PP_4984 -1.6 -7.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2029 -1.6 -2.2 von Willebrand factor type A domain protein compare
PP_3555 -1.6 -6.1 putative Transmembrane sensor compare
PP_2817 -1.6 -6.7 Multidrug efflux RND membrane fusion protein MexC compare
PP_1181 -1.6 -7.7 DNA-binding response regulator compare
PP_t12 -1.6 -1.5 tRNA-Thr compare
PP_4803 -1.6 -5.6 D-alanyl-D-alanine carboxypeptidase compare
PP_3731 -1.6 -7.0 Transcriptional regulator, TetR family compare
PP_0365 -1.6 -7.8 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3946 -1.5 -1.2 HTH-type transcriptional repressor NicR compare
PP_0989 -1.5 -2.3 glycine cleavage system H protein 1 compare
PP_0291 -1.5 -2.6 conserved protein of unknown function compare
PP_4546 -1.5 -3.4 ATP-dependent helicase HrpA compare
PP_2032 -1.5 -4.6 putative ATPase compare
PP_0995 -1.5 -7.5 conserved membrane protein of unknown function compare
PP_1036 -1.5 -5.8 membrane-bound lytic murein transglycosylase F compare
PP_1826 -1.5 -2.4 Hydrolase, isochorismatase family compare


Specific Phenotypes

For 39 genes in this experiment

For carbon source Delta-Undecalactone in Pseudomonas putida KT2440

For carbon source Delta-Undecalactone across organisms