Experiment set12IT017 for Pseudomonas putida KT2440

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_3951 -7.9 -5.4 3-oxoadipate CoA-transferase subunit A compare
PP_0422 -7.8 -5.4 Indole-3-glycerol phosphate synthase compare
PP_1988 -7.5 -7.3 3-isopropylmalate dehydrogenase compare
PP_3952 -7.4 -8.8 3-oxoadipate CoA-transferase subunit A conserved
PP_4678 -7.1 -11.9 Ketol-acid reductoisomerase compare
PP_4680 -7.0 -10.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -6.9 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5015 -6.9 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0966 -6.9 -10.5 Histidinol dehydrogenase compare
PP_2001 -6.8 -10.4 O-succinylhomoserine sulfhydrylase compare
PP_1079 -6.8 -4.7 Ornithine carbamoyltransferase compare
PP_5098 -6.7 -8.0 methionine biosynthesis protein MetW compare
PP_4890 -6.7 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_1379 -6.6 -7.9 3-carboxy-cis,cis-muconate cycloisomerase conserved
PP_1985 -6.6 -7.9 3-isopropylmalate dehydratase large subunit compare
PP_5097 -6.6 -13.4 homoserine O-acetyltransferase compare
PP_0420 -6.5 -13.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1377 -6.4 -8.8 beta-ketoadipyl-CoA thiolase conserved
PP_4656 -6.4 -9.6 protocatechuate 3,4-dioxygenase beta chain conserved
PP_5289 -6.4 -4.4 Acetylglutamate kinase compare
PP_0787 -6.3 -6.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1995 -6.2 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -6.2 -22.9 Anthranilate synthase component 1 compare
PP_0290 -6.1 -5.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -6.1 -8.3 phosphoserine phosphatase compare
PP_2370 -6.1 -4.2 conserved protein of unknown function compare
PP_1375 -6.0 -15.6 transcription regulatory protein (pca regulon) conserved
PP_3511 -5.9 -9.9 Branched-chain-amino-acid aminotransferase compare
PP_4724 -5.9 -5.7 Carbamoyl-phosphate synthase small chain compare
PP_1380 -5.9 -7.5 3-oxoadipate enol-lactonase 2 conserved
PP_4364 -5.9 -6.1 putative Anti-sigma F factor antagonist compare
PP_4723 -5.8 -9.7 Carbamoyl-phosphate synthase large chain compare
PP_5128 -5.7 -8.9 Dihydroxy-acid dehydratase compare
PP_5185 -5.7 -6.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -5.7 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -5.7 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1088 -5.6 -8.6 Argininosuccinate synthase compare
PP_2327 -5.6 -5.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0965 -5.6 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0164 -5.5 -9.3 conserved protein of unknown function compare
PP_1713 -5.4 -2.9 Transcriptional regulator PcaQ compare
PP_1381 -5.4 -2.1 4-carboxymuconolactone decarboxylase compare
PP_4679 -5.2 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0083 -5.2 -3.6 tryptophan synthase beta chain compare
PP_2371 -5.1 -9.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -5.1 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4655 -5.1 -10.2 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_3999 -5.1 -7.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0289 -5.0 -9.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0082 -4.9 -3.4 tryptophan synthase alpha chain compare
PP_0691 -4.6 -6.4 Glutamate 5-kinase compare
PP_0184 -4.6 -4.5 Argininosuccinate lyase compare
PP_0421 -4.5 -8.8 Anthranilate phosphoribosyltransferase compare
PP_4799 -4.4 -3.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1986 -4.4 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_0001 -4.3 -3.0 probable chromosome-partitioning protein compare
PP_4999 -4.3 -3.0 dihydroorotase-like protein compare
PP_1025 -4.2 -11.0 2-isopropylmalate synthase compare
PP_1231 -4.2 -9.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2390 -4.0 -8.1 Transcriptional regulator, LysR family compare
PP_0291 -3.8 -4.7 conserved protein of unknown function compare
PP_5155 -3.7 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1376 -3.5 -11.3 4-hydroxybenzoate transporter compare
PP_2168 -3.5 -11.6 Transaldolase compare
PP_2388 -3.4 -4.5 Transporter, LysE family compare
PP_5303 -3.4 -6.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5104 -3.3 -6.2 thiazole synthase compare
PP_4902 -3.2 -3.1 Oligoribonuclease compare
PP_4696 -3.1 -5.2 Nitrogen regulation protein NR(I) compare
PP_1233 -3.1 -6.3 sulfurtransferase compare
PP_0339 -3.1 -6.8 Pyruvate dehydrogenase E1 component compare
PP_3484 -3.0 -5.8 Response regulator receiver protein compare
PP_2328 -3.0 -8.1 Phosphoadenosine phosphosulfate reductase compare
PP_4699 -3.0 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4993 -3.0 -2.9 Glutathione synthetase compare
PP_0393 -2.9 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4700 -2.8 -1.9 pantothenate synthetase compare
PP_5095 -2.8 -2.3 pyrroline-5-carboxylate reductase compare
PP_1654 -2.7 -3.7 cysteine synthase B compare
PP_0735 -2.5 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_4922 -2.3 -11.6 Phosphomethylpyrimidine synthase compare
PP_3790 -2.3 -10.2 diaminopimelate epimerase compare
PP_5217 -2.2 -14.9 Polyphosphate kinase compare
PP_4782 -2.2 -5.6 Phosphomethylpyrimidine kinase compare
PP_2356 -2.0 -8.9 putative Phytochrome family protein compare
PP_1493 -2.0 -3.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4943 -1.9 -2.5 putative Glycosyl transferase compare
PP_2414 -1.8 -1.1 conserved exported protein of unknown function compare
PP_1629 -1.8 -5.1 Protein RecA compare
PP_1994 -1.8 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_1664 -1.7 -4.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_4004 -1.7 -3.2 DNA translocase FtsK compare
PP_0368 -1.7 -8.0 putative Acyl-CoA dehydrogenase compare
PP_4829 -1.7 -2.2 putative precorrin-3B synthase compare
PP_5035 -1.7 -5.3 Histidine utilization repressor compare
PP_1733 -1.6 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_0435 -1.6 -10.7 Peptidase, M23/M37 family compare
PP_1378 -1.6 -4.9 alpha-ketoglutarate permease compare
PP_4695 -1.6 -6.6 Sensory box histidine kinase compare
PP_3590 -1.6 -6.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4120 -1.5 -3.9 NADH-quinone oxidoreductase subunit B compare
PP_0673 -1.5 -2.6 conserved protein of unknown function compare
PP_1912 -1.5 -4.5 Phosphate acyltransferase compare
PP_2000 -1.5 -1.4 amidophosphoribosyl transferase compare
PP_3105 -1.5 -2.0 conserved membrane protein of unknown function compare
PP_1348 -1.5 -5.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2132 -1.5 -3.0 Universal stress protein compare
PP_0406 -1.4 -5.2 Nucleotidyltransferase family protein compare
PP_2336 -1.4 -2.9 aconitate hydratase 1 compare
PP_5017 -1.4 -1.4 Sec-independent protein translocase protein TatB compare
PP_1355 -1.4 -10.6 Muropeptide permease AmpG compare
PP_4480 -1.4 -6.8 arginine N-succinyltransferase, subunit alpha compare
PP_2378 -1.3 -2.1 Fe/S biogenesis protein NfuA compare
PP_1826 -1.3 -2.9 Hydrolase, isochorismatase family compare
PP_1999 -1.3 -2.2 membrane protein required for colicin V production compare
PP_0888 -1.3 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_1215 -1.2 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_4917 -1.2 -3.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4355 -1.2 -2.7 flagellar export apparatus subunit compare
PP_5310 -1.2 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_4338 -1.2 -6.3 Chemotaxis histidine kinase CheA compare
PP_2354 -1.2 -7.6 Sensory box histidine kinase/response regulator compare
PP_1185 -1.2 -2.4 Outer membrane protein H1 compare
PP_0833 -1.2 -1.1 queuine tRNA-ribosyltransferase compare
PP_0356 -1.2 -5.9 malate synthase G compare
PP_4130 -1.2 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0405 -1.2 -9.4 conserved protein of unknown function compare
PP_0434 -1.2 -6.9 Anhydro-N-acetylmuramic acid kinase compare
PP_0612 -1.2 -6.1 FAD-dependent glycine/D-amino acid oxidase compare
PP_1764 -1.1 -4.9 Phosphoglycolate phosphatase 2 compare
PP_2433 -1.1 -1.1 conserved protein of unknown function compare
PP_5230 -1.1 -2.0 Tyrosine recombinase XerC compare
PP_1217 -1.1 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0025 -1.1 -1.3 hypothetical protein compare
PP_4880 -1.1 -5.9 exoribonuclease R compare
PP_2145 -1.1 -4.3 beta-N-acetylglucosaminidase compare
PP_3328 -1.1 -2.4 putative Ring-cleaving dioxygenase compare
PP_4392 -1.1 -4.8 chemotaxis protein methyltransferase compare
PP_1304 -1.0 -6.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1293 -1.0 -0.9 molybdopterin synthase small subunit compare
PP_5329 -1.0 -3.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0914 -1.0 -5.8 GGDEF domain protein compare
PP_1268 -1.0 -1.5 putative HtrA suppressor protein sohA compare
PP_5347 -1.0 -5.4 pyruvate carboxylase subunit A compare
PP_4122 -1.0 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4937 -1.0 -2.6 toluene tolerance protein compare
PP_2302 -1.0 -3.3 DNA-binding, ATP-dependent protease compare
PP_3821 -1.0 -4.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1783 -1.0 -0.9 dTDP-glucose pyrophosphorylase compare
PP_4136 -1.0 -1.3 Transcriptional regulator, LuxR family compare
PP_1824 -1.0 -1.6 Smr domain protein compare
PP_1216 -1.0 -1.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5346 -1.0 -5.9 pyruvate carboxylase subunit B compare
PP_1589 -1.0 -5.3 uridylyltransferase compare
PP_2087 -1.0 -2.0 CmpX protein compare
PP_5294 -0.9 -3.3 Ribonuclease PH compare
PP_0566 -0.9 -0.9 translation-related factor compare
PP_5055 -0.9 -2.4 Sulfurtransferase compare
PP_4126 -0.9 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_0872 -0.9 -3.4 Peptide chain release factor 3 compare
PP_0063 -0.9 -1.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1294 -0.9 -2.2 molybdopterin synthase large subunit compare
PP_2720 -0.9 -1.1 conserved protein of unknown function compare
PP_0065 -0.9 -1.9 NAD-binding component of TrK potassium transporter compare
PP_5352 -0.9 -4.6 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_4697 -0.8 -1.7 poly(A) polymerase compare
PP_0916 -0.8 -2.8 Amino acid transporter LysE compare
PP_1979 -0.8 -2.3 putative Hydrolase compare
PP_2429 -0.8 -1.1 putative Membrane protein compare
PP_0758 -0.8 -2.3 conserved protein of unknown function compare
PP_0401 -0.8 -2.3 Ribosomal RNA small subunit methyltransferase A compare
PP_4471 -0.8 -2.7 Magnesium transporter compare
PP_0963 -0.8 -1.6 putative BolA family protein compare
PP_1214 -0.8 -1.5 putative transcriptional regulatory protein compare
PP_4379 -0.8 -3.1 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5146 -0.8 -4.2 RNA pyrophosphohydrolase compare
PP_1426 -0.8 -5.4 L-aspartate oxidase compare
PP_4895 -0.8 -1.2 tRNA dimethylallyltransferase compare
PP_4804 -0.8 -1.9 RlpA-like lipoprotein compare
PP_4268 -0.8 -0.8 nucleoid-associated broad specificity regulator compare
PP_1128 -0.8 -2.6 OmpA family protein compare
PP_0986 -0.8 -3.0 aminomethyltransferase compare
PP_2324 -0.8 -3.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4121 -0.8 -2.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4481 -0.8 -2.9 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2903 -0.8 -1.4 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4124 -0.8 -2.4 NADH-quinone oxidoreductase subunit G compare
PP_5640 -0.8 -1.7 conserved protein of unknown function compare
PP_4739 -0.8 -1.8 conserved protein of unknown function compare
PP_2550 -0.8 -1.3 putative transcriptional regulatory protein compare
PP_4910 -0.8 -1.1 conserved protein of unknown function compare
PP_4824 -0.8 -2.7 Sensor histidine kinase/response regulator compare
PP_3789 -0.8 -3.4 putative Efflux transporter compare
PP_4337 -0.7 -3.4 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1374 -0.7 -1.6 conserved protein of unknown function compare
PP_1536 -0.7 -2.0 conserved protein of unknown function compare
PP_1303 -0.7 -3.9 Sulfate adenylyltransferase subunit 2 compare
PP_0988 -0.7 -5.0 glycine dehydrogenase compare
PP_5218 -0.7 -3.3 DedA family protein compare
PP_3241 -0.7 -0.9 conserved exported protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Protocatechuic Acid in Pseudomonas putida KT2440

For carbon source Protocatechuic Acid across organisms