Experiment set12IT016 for Pseudomonas putida KT2440

Compare to:

4-Hydroxybenzoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_3511 -7.2 -8.5 Branched-chain-amino-acid aminotransferase compare
PP_1985 -7.1 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_0967 -7.0 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -6.8 -11.4 Histidinol dehydrogenase compare
PP_3952 -6.8 -11.3 3-oxoadipate CoA-transferase subunit A conserved
PP_1379 -6.8 -8.1 3-carboxy-cis,cis-muconate cycloisomerase conserved
PP_4890 -6.7 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_1986 -6.6 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_0422 -6.5 -8.0 Indole-3-glycerol phosphate synthase compare
PP_5014 -6.5 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_0420 -6.4 -13.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0290 -6.4 -4.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -6.4 -7.6 phosphoserine phosphatase compare
PP_2001 -6.4 -12.3 O-succinylhomoserine sulfhydrylase compare
PP_1988 -6.3 -11.4 3-isopropylmalate dehydrogenase compare
PP_5097 -6.3 -15.4 homoserine O-acetyltransferase compare
PP_5185 -6.3 -4.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0417 -6.3 -21.9 Anthranilate synthase component 1 compare
PP_2371 -6.3 -8.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1380 -6.2 -8.5 3-oxoadipate enol-lactonase 2 conserved
PP_4678 -6.2 -17.1 Ketol-acid reductoisomerase compare
PP_5015 -6.2 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4679 -6.2 -7.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0691 -6.2 -4.3 Glutamate 5-kinase compare
PP_0289 -6.1 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_4680 -6.1 -16.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -5.9 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5128 -5.9 -10.3 Dihydroxy-acid dehydratase compare
PP_5098 -5.8 -10.5 methionine biosynthesis protein MetW compare
PP_1375 -5.8 -15.9 transcription regulatory protein (pca regulon) conserved
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2327 -5.7 -5.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1088 -5.6 -8.6 Argininosuccinate synthase compare
PP_0965 -5.6 -11.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -5.5 -7.6 Ornithine carbamoyltransferase compare
PP_3951 -5.5 -6.3 3-oxoadipate CoA-transferase subunit A compare
PP_1381 -5.4 -2.2 4-carboxymuconolactone decarboxylase compare
PP_4723 -5.4 -12.1 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.3 -7.3 Carbamoyl-phosphate synthase small chain compare
PP_1377 -5.3 -10.2 beta-ketoadipyl-CoA thiolase conserved
PP_4655 -5.2 -11.7 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_0164 -5.0 -9.8 conserved protein of unknown function compare
PP_0082 -5.0 -3.4 tryptophan synthase alpha chain compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_0083 -4.6 -6.3 tryptophan synthase beta chain compare
PP_4656 -4.5 -7.2 protocatechuate 3,4-dioxygenase beta chain conserved
PP_5085 -4.5 -6.9 malic enzyme B compare
PP_5095 -4.5 -3.1 pyrroline-5-carboxylate reductase compare
PP_0421 -4.5 -7.3 Anthranilate phosphoribosyltransferase compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3999 -4.4 -10.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4999 -4.4 -3.0 dihydroorotase-like protein compare
PP_2168 -4.3 -11.9 Transaldolase compare
PP_5289 -4.2 -5.3 Acetylglutamate kinase compare
PP_0292 -4.0 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5155 -4.0 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0787 -3.9 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0291 -3.8 -3.2 conserved protein of unknown function compare
PP_4364 -3.8 -5.7 putative Anti-sigma F factor antagonist compare
PP_1231 -3.6 -6.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1025 -3.6 -9.8 2-isopropylmalate synthase compare
PP_5104 -3.6 -10.1 thiazole synthase compare
PP_4696 -3.5 -4.8 Nitrogen regulation protein NR(I) compare
PP_1233 -3.5 -5.9 sulfurtransferase compare
PP_5303 -3.4 -5.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0339 -3.3 -6.8 Pyruvate dehydrogenase E1 component compare
PP_3537 -3.2 -12.0 p-hydroxybenzoate hydroxylase conserved
PP_4699 -3.1 -5.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1654 -3.0 -4.1 cysteine synthase B compare
PP_3538 -3.0 -11.7 transcriptional regulator conserved
PP_2370 -3.0 -4.9 conserved protein of unknown function compare
PP_2328 -2.9 -7.6 Phosphoadenosine phosphosulfate reductase compare
PP_4700 -2.9 -2.0 pantothenate synthetase compare
PP_5347 -2.8 -12.6 pyruvate carboxylase subunit A compare
PP_0393 -2.8 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3590 -2.7 -5.8 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3484 -2.5 -6.6 Response regulator receiver protein compare
PP_4782 -2.5 -6.9 Phosphomethylpyrimidine kinase compare
PP_1713 -2.5 -2.5 Transcriptional regulator PcaQ compare
PP_2414 -2.5 -1.6 conserved exported protein of unknown function compare
PP_5114 -2.4 -2.9 putative adenine methyltransferase compare
PP_1269 -2.4 -2.1 Universal stress protein family compare
PP_2388 -2.4 -4.1 Transporter, LysE family compare
PP_5346 -2.4 -10.6 pyruvate carboxylase subunit B compare
PP_1912 -2.2 -6.3 Phosphate acyltransferase compare
PP_2390 -2.1 -6.5 Transcriptional regulator, LysR family compare
PP_4993 -2.1 -3.9 Glutathione synthetase compare
PP_4922 -2.0 -10.4 Phosphomethylpyrimidine synthase compare
PP_4902 -2.0 -3.0 Oligoribonuclease compare
PP_1994 -2.0 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_5331 -2.0 -3.7 Long-chain acyl-CoA thioester hydrolase compare
PP_5217 -1.9 -12.6 Polyphosphate kinase compare
PP_1733 -1.9 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_5348 -1.9 -7.7 Transcriptional regulator, LysR family compare
PP_1493 -1.8 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1348 -1.8 -6.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1468 -1.8 -2.0 Tyrosine recombinase XerD compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_1217 -1.8 -4.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0735 -1.8 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4338 -1.7 -8.2 Chemotaxis histidine kinase CheA compare
PP_4910 -1.7 -1.7 conserved protein of unknown function compare
PP_1629 -1.7 -4.7 Protein RecA compare
PP_2402 -1.6 -3.0 putative Sensor histidine kinase compare
PP_0001 -1.6 -1.7 probable chromosome-partitioning protein compare
PP_0435 -1.5 -10.0 Peptidase, M23/M37 family compare
PP_4129 -1.5 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1734 -1.5 -2.0 Probable septum site-determining protein MinC compare
PP_2356 -1.5 -7.5 putative Phytochrome family protein compare
PP_3105 -1.5 -2.2 conserved membrane protein of unknown function compare
PP_1609 -1.5 -1.7 conserved protein of unknown function compare
PP_4136 -1.5 -1.6 Transcriptional regulator, LuxR family compare
PP_3048 -1.4 -3.6 conserved protein of unknown function compare
PP_0406 -1.4 -6.2 Nucleotidyltransferase family protein compare
PP_1378 -1.4 -4.4 alpha-ketoglutarate permease compare
PP_1355 -1.4 -11.4 Muropeptide permease AmpG compare
PP_4828 -1.4 -1.2 Precorrin-8X methylmutase compare
PP_1215 -1.4 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_4392 -1.4 -6.2 chemotaxis protein methyltransferase compare
PP_0547 -1.4 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2354 -1.3 -7.9 Sensory box histidine kinase/response regulator compare
PP_0612 -1.3 -6.4 FAD-dependent glycine/D-amino acid oxidase compare
PP_0434 -1.3 -7.4 Anhydro-N-acetylmuramic acid kinase compare
PP_1428 -1.3 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_4098 -1.3 -2.4 UvrABC system protein C compare
PP_3637 -1.3 -1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1237 -1.3 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4004 -1.3 -3.0 DNA translocase FtsK compare
PP_4481 -1.3 -5.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2378 -1.3 -1.8 Fe/S biogenesis protein NfuA compare
PP_5310 -1.3 -4.4 junction-specific ATP-dependent DNA helicase compare
PP_0914 -1.2 -7.2 GGDEF domain protein compare
PP_3539 -1.2 -1.9 putative Transcriptional regulator compare
PP_5329 -1.2 -3.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1764 -1.2 -5.9 Phosphoglycolate phosphatase 2 compare
PP_3506 -1.2 -3.7 Magnesium chelatase, subunit ChII compare
PP_2087 -1.2 -2.4 CmpX protein compare
PP_3365 -1.2 -1.7 Acetolactate synthase compare
PP_4120 -1.2 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_4126 -1.2 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_1055 -1.2 -1.9 Type II secretion pathway protein GspN compare
PP_4832 -1.2 -3.1 Precorrin-6x reductase compare
PP_4701 -1.1 -1.3 glucose-6-phosphate isomerase compare
PP_0405 -1.1 -8.5 conserved protein of unknown function compare
PP_2302 -1.1 -2.9 DNA-binding, ATP-dependent protease compare
PP_4342 -1.1 -2.3 flagellar synthesis regulator, putative ATPase compare
PP_3245 -1.1 -1.9 conserved protein of unknown function compare
PP_1353 -1.1 -0.7 conserved membrane protein of unknown function compare
PP_4826 -1.1 -4.4 Precorrin-3B C17-methyltransferase compare
PP_3662 -1.1 -5.9 conserved protein of unknown function compare
PP_1076 -1.0 -1.7 aquaglyceroporin compare
PP_5035 -1.0 -3.8 Histidine utilization repressor compare
PP_5328 -1.0 -2.8 putative phosphate transport system permease protein compare
PP_0368 -1.0 -5.6 putative Acyl-CoA dehydrogenase compare
PP_3840 -1.0 -1.8 conserved protein of unknown function compare
PP_4880 -1.0 -5.1 exoribonuclease R compare
PP_1568 -1.0 -1.3 conserved protein of unknown function compare
PP_5039 -1.0 -2.7 conserved protein of unknown function compare
PP_3508 -1.0 -2.2 Protein CobW compare
PP_4695 -1.0 -4.8 Sensory box histidine kinase compare
PP_3790 -1.0 -5.7 diaminopimelate epimerase compare
PP_0986 -1.0 -3.9 aminomethyltransferase compare
PP_3649 -1.0 -3.4 Transcriptional regulator, GntR family compare
PP_5227 -1.0 -3.6 diaminopimelate decarboxylase compare
PP_2082 -1.0 -6.1 phosphoenolpyruvate synthetase compare
PP_4130 -1.0 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1664 -1.0 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4546 -1.0 -2.5 ATP-dependent helicase HrpA compare
PP_5203 -1.0 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_3938 -1.0 -1.7 conserved protein of unknown function compare
PP_4480 -1.0 -5.5 arginine N-succinyltransferase, subunit alpha compare
PP_2132 -0.9 -2.3 Universal stress protein compare
PP_2000 -0.9 -1.4 amidophosphoribosyl transferase compare
PP_2340 -0.9 -2.3 conserved protein of unknown function compare
PP_1521 -0.9 -2.8 conserved protein of unknown function compare
PP_3102 -0.9 -2.8 conserved protein of unknown function compare
PP_0122 -0.9 -2.1 conserved exported protein of unknown function compare
PP_0362 -0.9 -5.7 Biotin synthase compare
PP_0246 -0.9 -1.9 two-component system DNA-binding response transcriptional dual regulator compare
PP_5533 -0.9 -1.4 conserved protein of unknown function compare
PP_4829 -0.9 -1.7 putative precorrin-3B synthase compare
PP_0167 -0.9 -7.1 Toxin secretion ATP-binding protein compare
PP_0087 -0.9 -3.0 conserved exported protein of unknown function compare
PP_0997 -0.9 -5.1 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_1216 -0.9 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1783 -0.9 -1.0 dTDP-glucose pyrophosphorylase compare
PP_4482 -0.9 -2.7 Transcriptional regulator, AraC family compare
PP_0168 -0.9 -7.5 putative surface adhesion protein compare
PP_5146 -0.8 -4.5 RNA pyrophosphohydrolase compare
PP_1917 -0.8 -4.0 4-amino-4-deoxychorismate lyase compare
PP_0366 -0.8 -3.5 dethiobiotin synthetase compare
PP_1021 -0.8 -2.3 DNA-binding transcriptional regulator compare
PP_1826 -0.8 -1.9 Hydrolase, isochorismatase family compare
PP_4943 -0.8 -1.0 putative Glycosyl transferase compare
PP_3821 -0.8 -3.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1426 -0.8 -6.1 L-aspartate oxidase compare
PP_2336 -0.8 -2.1 aconitate hydratase 1 compare
PP_1987 -0.8 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_1675 -0.8 -4.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0988 -0.8 -5.5 glycine dehydrogenase compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source 4-Hydroxybenzoic Acid in Pseudomonas putida KT2440

For carbon source 4-Hydroxybenzoic Acid across organisms