Experiment set12IT015 for Pseudomonas putida KT2440

Compare to:

Protocatechuic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +3.1 26.2 Sensor protein GacS compare
PP_4099 +3.0 29.1 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4171 +2.3 14.6 conserved exported protein of unknown function compare
PP_4373 +1.6 13.5 Transcriptional regulator FleQ compare
PP_1898 +1.5 4.9 MotA/TolQ/ExbB proton channel family protein compare
PP_5053 +1.4 5.3 Protein-export protein SecB compare
PP_1623 +1.2 9.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_0959 +1.2 2.8 phospholipid ABC transporter compare
PP_1322 +1.0 2.2 putative Lipoprotein compare
PP_5610 +1.0 3.2 protein of unknown function compare
PP_1113 +1.0 7.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5508 +0.9 1.8 conserved protein of unknown function compare
PP_2883 +0.9 2.8 conserved protein of unknown function compare
PP_2387 +0.9 2.2 conserved protein of unknown function compare
PP_2889 +0.9 3.8 putative Transmembrane regulator PrtR compare
PP_1268 +0.9 3.0 putative HtrA suppressor protein sohA compare
PP_0574 +0.9 7.5 DNA-binding response regulator, LuxR family compare
PP_3761 +0.9 7.2 Sensor histidine kinase/response regulator compare
PP_4173 +0.9 4.7 Sensor histidine kinase/response regulator compare
PP_4172 +0.8 4.6 conserved exported protein of unknown function compare
PP_0821 +0.8 2.4 conserved exported protein of unknown function compare
PP_0948 +0.8 3.0 Phosphocarrier protein HPr compare
PP_4561 +0.8 1.0 stress response protein compare
PP_4994 +0.8 3.1 conserved protein of unknown function compare
PP_4217 +0.8 7.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_2765 +0.8 2.9 putative Sulfonate monooxygenase MsuD compare
PP_5232 +0.8 2.0 conserved protein of unknown function compare
PP_1325 +0.8 4.0 putative lipoprotein compare
PP_t29 +0.8 1.5 tRNA-Ala compare
PP_2759 +0.8 3.9 ribose ABC transporter - ATP-binding subunit compare
PP_5528 +0.8 1.1 conserved protein of unknown function compare
PP_4642 +0.7 1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_4959 +0.7 5.1 diguanylate cyclase compare
PP_1410 +0.7 1.7 conserved protein of unknown function compare
PP_3831 +0.7 2.6 conserved protein of unknown function compare
PP_1384 +0.7 5.0 Probable efflux pump outer membrane protein TtgC compare
PP_4223 +0.7 1.6 diaminobutyrate-2-oxoglutarate transaminase compare
PP_3738 +0.7 3.5 putative Transcriptional regulator VanR compare
PP_1575 +0.7 2.0 conserved protein of unknown function compare
PP_3527 +0.7 5.2 Transcriptional regulator, TetR family compare
PP_1633 +0.7 2.2 conserved exported protein of unknown function compare
PP_4045 +0.7 2.6 conserved protein of unknown function compare
PP_1328 +0.7 2.0 Protein MraZ compare
PP_4363 +0.7 4.9 Sensor histidine kinase/response regulator compare
PP_4199 +0.7 1.5 putative Lipoprotein compare
PP_0961 +0.7 4.2 toluene tolerance protein compare
PP_4961 +0.7 1.2 putative Lipoprotein compare
PP_0958 +0.7 3.3 phospholipid ABC transporter ATP-binding subunit compare
PP_3496 +0.7 3.4 Endoribonuclease L-PSP compare
PP_4214 +0.7 2.2 pyoverdine biosynthesis related protein compare
PP_0672 +0.7 5.6 Sensory box protein compare
PP_2581 +0.7 1.2 conserved protein of unknown function compare
PP_5483 +0.7 1.7 conserved protein of unknown function compare
PP_4418 +0.7 2.2 conserved protein of unknown function compare
PP_1663 +0.7 3.4 conserved exported protein of unknown function compare
PP_3245 +0.7 1.4 conserved protein of unknown function compare
PP_0738 +0.6 2.3 conserved protein of unknown function compare
PP_0305 +0.6 1.6 HTH-type transcriptional regulator CdhR compare
PP_4895 +0.6 1.5 tRNA dimethylallyltransferase compare
PP_2615 +0.6 1.0 hemolysin-coregulated protein compare
PP_0185 +0.6 4.4 Positive alginate biosynthesis regulatory protein compare
PP_5114 +0.6 1.1 putative adenine methyltransferase compare
PP_0177 +0.6 2.7 conserved protein of unknown function compare
PP_2256 +0.6 4.0 Transcriptional regulator, Cro/CI family compare
PP_4100 +0.6 2.8 Transcriptional regulator, Cro/CI family compare
PP_4136 +0.6 0.9 Transcriptional regulator, LuxR family compare
PP_2408 +0.6 3.1 cobalt-zinc-cadmium resistance protein compare
PP_2880 +0.6 1.8 Transcriptional regulator, TetR family compare
PP_2360 +0.6 2.5 putative type 1 pili subunit CsuA/B protein compare
PP_5267 +0.6 1.9 putative cytochrome c5 compare
PP_0804 +0.6 4.0 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4354 +0.6 1.1 flagellar export apparatus subunit compare
PP_2413 +0.6 4.4 GGDEF family protein compare
PP_3085 +0.6 2.8 putative Transmembrane sensor compare
PP_5225 +0.6 0.9 frataxin compare
PP_5469 +0.6 2.1 putative SAM-dependent methyltransferase compare
PP_1141 +0.6 3.5 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_2900 +0.6 2.0 conserved protein of unknown function compare
PP_4768 +0.6 2.2 Exonuclease compare
PP_3730 +0.6 1.8 Transcriptional regulatory protein AruR compare
PP_4263 +0.6 1.9 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0803 +0.6 4.1 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5063 +0.6 2.0 betaine aldehyde dehydrogenase, NAD-dependent compare
PP_2575 +0.6 1.7 conserved exported protein of unknown function compare
PP_0206 +0.6 1.7 Ferredoxin, 4Fe-4S compare
PP_4054 +0.5 1.7 conserved protein of unknown function compare
PP_4966 +0.5 1.5 transcriptional regulator of methionine metabolism compare
PP_0805 +0.5 3.4 Outer membrane efflux protein compare
PP_4871 +0.5 2.6 putative lysine decarboxylase family protein compare
PP_4787 +0.5 1.6 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4669 +0.5 1.5 OmpA family protein compare
PP_1385 +0.5 4.1 Probable efflux pump membrane transporter TtgB compare
PP_0173 +0.5 2.8 putative transcriptional factor-related protein compare
PP_3929 +0.5 2.4 conserved protein of unknown function compare
PP_5505 +0.5 1.9 conserved transmembrane protein of unknown function compare
PP_3339 +0.5 2.2 conserved exported protein of unknown function compare
PP_1112 +0.5 2.6 conserved membrane protein of unknown function compare
PP_1562 +0.5 1.1 putative Phage terminase, small subunit compare
PP_0627 +0.5 1.4 conserved protein of unknown function compare
PP_0962 +0.5 1.5 toluene-tolerance protein compare
PP_2229 +0.5 1.3 putative K(+)/H(+) antiporter subunit C compare
PP_3808 +0.5 1.3 Antibiotic synthesis protein MbtH compare
PP_5100 +0.5 1.7 dITP/XTP pyrophosphatase compare
PP_1215 +0.5 0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_0819 +0.5 2.8 conserved ferredoxin-like protein of unknown function compare
PP_2027 +0.5 2.0 conserved exported protein of unknown function compare
PP_0231 +0.5 2.3 taurine ABC transporter permease subunit compare
PP_0806 +0.5 4.7 putative Surface adhesion protein compare
PP_2950 +0.5 1.7 conserved protein of unknown function compare
PP_2773 +0.5 1.2 conserved protein of unknown function compare
PP_5597 +0.5 1.5 conserved protein of unknown function compare
PP_5241 +0.5 2.0 DNA-binding response regulator, LuxR family compare
PP_2231 +0.5 1.4 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_2163 +0.5 2.8 VacJ lipoprotein compare
PP_0674 +0.5 3.6 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4721 +0.5 2.4 conserved membrane protein of unknown function compare
PP_3942 +0.5 2.2 maleate isomerase compare
PP_5565 +0.5 2.6 conserved protein of unknown function compare
PP_2003 +0.5 1.8 conserved protein of unknown function compare
PP_1489 +0.5 1.6 CheW domain protein compare
PP_2646 +0.5 2.0 conserved protein of unknown function compare
PP_1808 +0.5 1.5 glucose-6-phosphate isomerase compare
PP_1109 +0.5 4.0 Transcriptional regulator, GntR family compare
PP_0719 +0.5 0.2 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5648 +0.5 2.2 conserved exported protein of unknown function compare
PP_2457 +0.5 2.7 DNA-binding transcriptional repressor compare
PP_0414 +0.5 2.6 Polyamine ABC transporter, permease protein compare
PP_0781 +0.4 1.1 conserved protein of unknown function compare
PP_3197 +0.4 2.0 Glyoxalase family protein compare
PP_4952 +0.4 1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1644 +0.4 1.9 NAD(P)H dehydrogenase (quinone) compare
PP_5253 +0.4 1.8 Arylesterase compare
PP_2361 +0.4 3.0 putative chaperone protein compare
PP_1694 +0.4 1.7 DNA recombination limiting inversions protein compare
PP_0398 +0.4 0.8 Thiosulfate sulfurtransferase GlpE compare
PP_4797 +0.4 1.2 conserved protein of unknown function compare
PP_2750 +0.4 1.6 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1656 +0.4 2.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_4208 +0.4 2.2 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_5054 +0.4 0.7 glutaredoxin 3 compare
PP_1075 +0.4 2.2 glycerol kinase compare
PP_4847 +0.4 1.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_3237 +0.4 1.9 Universal stress protein family compare
PP_3919 +0.4 1.4 conserved protein of unknown function compare
PP_4710 +0.4 3.0 tRNA pseudouridine 55 synthase compare
PP_2737 +0.4 0.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5176 +0.4 0.7 conserved protein of unknown function compare
PP_2196 +0.4 1.5 agmatinase compare
PP_4447 +0.4 2.0 conserved protein of unknown function compare
PP_3185 +0.4 1.5 Pet18 protein compare
PP_4227 +0.4 1.0 conserved protein of unknown function compare
PP_4273 +0.4 0.8 Transcriptional regulator, MerR family compare
PP_4306 +0.4 2.4 conserved protein of unknown function compare
PP_5083 +0.4 1.7 putative Type IV pili biogenesis protein PilM compare
PP_3307 +0.4 0.7 conserved protein of unknown function compare
PP_1655 +0.4 1.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3438 +0.4 1.9 conserved membrane protein of unknown function compare
PP_5705 +0.4 1.5 protein of unknown function compare
PP_0750 +0.4 1.4 conserved protein of unknown function compare
PP_0440 +0.4 1.3 Elongation factor Tu-A compare
PP_2878 +0.4 0.9 conserved protein of unknown function compare
PP_0355 +0.4 1.3 Response regulator compare
PP_5121 +0.4 1.1 conserved exported protein of unknown function compare
PP_0533 +0.4 1.9 histidine kinase compare
PP_2729 +0.4 2.2 conserved protein of unknown function compare
PP_2642 +0.4 2.6 Transcriptional regulator, GntR family compare
PP_0385 +0.4 1.3 putative serine acetyltransferase compare
PP_4435 +0.4 1.5 conserved protein of unknown function compare
PP_2836 +0.4 1.2 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_1279 +0.4 2.3 Probable alginate O-acetylase AlgJ compare
PP_4066 +0.4 1.0 methylglutaconyl-CoA hydratase compare
PP_5309 +0.4 0.3 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3559 +0.4 1.2 glycine betaine ABC transporter (permease) compare
PP_2848 +0.4 0.5 urease accessory protein compare
PP_4044 +0.4 2.2 conserved protein of unknown function compare
PP_4033 +0.4 2.0 Ribonuclease Z compare
PP_0240 +0.4 1.7 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_3757 +0.4 1.4 Chemotaxis protein CheY compare
PP_1140 +0.4 2.8 branched chain amino acid transporter - permease subunit compare
PP_1282 +0.4 2.8 Alginate biosynthesis protein AlgX compare
PP_3989 +0.4 1.1 DNA-cytosine methyltransferase compare
PP_5313 +0.4 1.2 DNA-binding protein HU-alpha compare
PP_2062 +0.4 1.9 conserved protein of unknown function compare
PP_5714 +0.4 1.1 conserved protein of unknown function compare
PP_5541 +0.4 1.3 conserved protein of unknown function compare
PP_1417 +0.4 1.9 putative Tricarboxylate transport protein TctB compare
PP_1502 +0.4 1.8 OmpA family protein compare
PP_1386 +0.4 2.1 Probable efflux pump periplasmic linker TtgA compare
PP_3684 +0.4 1.4 conserved protein of unknown function compare
PP_1706 +0.4 1.3 Nitrite reductase compare
PP_1979 +0.4 1.2 putative Hydrolase compare
PP_0001 +0.4 0.5 probable chromosome-partitioning protein compare
PP_4005 +0.4 1.3 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_1490 +0.4 2.3 Probable biofilm formation methyltransferase WspC compare
PP_1476 +0.4 1.9 conserved protein of unknown function compare
PP_4946 +0.4 2.1 sodium/L-proline transporter compare
PP_4387 +0.4 1.7 conserved exported protein of unknown function compare
PP_2595 +0.4 2.0 putative ABC transporter, permease/ATP-binding protein compare
PP_3480 +0.4 1.5 conserved protein of unknown function compare
PP_2257 +0.4 2.2 putative aerotaxis receptor compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Protocatechuic Acid in Pseudomonas putida KT2440

For carbon source Protocatechuic Acid across organisms