Experiment set12IT012 for Pseudomonas putida KT2440

Compare to:

Hydroxy-L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
PP_1255 -8.5 -5.9 putative cis-4-hydroxy-D-proline oxidase conserved
PP_0422 -7.9 -5.5 Indole-3-glycerol phosphate synthase compare
PP_1985 -7.9 -5.4 3-isopropylmalate dehydratase large subunit compare
PP_1259 -7.7 -7.5 Aspartate-proton symporter conserved
PP_0787 -7.6 -5.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4890 -7.4 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4678 -7.2 -12.1 Ketol-acid reductoisomerase compare
PP_4602 -7.2 -8.6 Transcriptional regulator, AraC family conserved
PP_1257 -7.2 -8.6 putative 1-pyrroline-4-hydroxy-2-carboxylate deaminase conserved
PP_3511 -7.1 -8.5 Branched-chain-amino-acid aminotransferase compare
PP_0966 -7.1 -9.8 Histidinol dehydrogenase compare
PP_0420 -7.1 -10.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5015 -7.0 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5097 -7.0 -11.7 homoserine O-acetyltransferase compare
PP_4909 -6.9 -4.8 phosphoserine phosphatase compare
PP_1258 -6.9 -6.7 4-hydroxyproline epimerase conserved
PP_2001 -6.8 -10.5 O-succinylhomoserine sulfhydrylase compare
PP_0417 -6.7 -19.0 Anthranilate synthase component 1 compare
PP_2168 -6.6 -7.9 Transaldolase compare
PP_1986 -6.6 -4.6 3-isopropylmalate dehydratase small subunit compare
PP_5098 -6.5 -9.0 methionine biosynthesis protein MetW compare
PP_4680 -6.5 -13.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -6.5 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0290 -6.5 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5289 -6.4 -4.5 Acetylglutamate kinase compare
PP_4679 -6.4 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1256 -6.4 -8.8 putative alpha-ketoglutarate semialdehyde dehydrogenase conserved
PP_1988 -6.2 -10.4 3-isopropylmalate dehydrogenase compare
PP_1995 -6.1 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -6.0 -5.9 Argininosuccinate synthase compare
PP_4724 -6.0 -5.8 Carbamoyl-phosphate synthase small chain compare
PP_0965 -5.8 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4723 -5.8 -10.4 Carbamoyl-phosphate synthase large chain compare
PP_0293 -5.7 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1025 -5.4 -13.3 2-isopropylmalate synthase compare
PP_5185 -5.4 -7.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0083 -5.3 -3.6 tryptophan synthase beta chain compare
PP_0421 -5.2 -8.5 Anthranilate phosphoribosyltransferase compare
PP_5014 -5.2 -5.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_2327 -5.1 -7.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_1079 -4.9 -7.4 Ornithine carbamoyltransferase compare
PP_0164 -4.8 -11.1 conserved protein of unknown function compare
PP_5128 -4.7 -7.4 Dihydroxy-acid dehydratase compare
PP_0289 -4.6 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_4799 -4.5 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0082 -4.5 -5.3 tryptophan synthase alpha chain compare
PP_4999 -4.4 -3.1 dihydroorotase-like protein compare
PP_3999 -4.3 -10.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0339 -4.3 -4.2 Pyruvate dehydrogenase E1 component compare
PP_2371 -4.1 -9.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1233 -3.8 -7.0 sulfurtransferase compare
PP_4696 -3.7 -4.3 Nitrogen regulation protein NR(I) compare
PP_5303 -3.7 -6.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1231 -3.5 -6.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5114 -3.5 -2.7 putative adenine methyltransferase compare
PP_2328 -3.4 -8.1 Phosphoadenosine phosphosulfate reductase compare
PP_4782 -3.3 -7.3 Phosphomethylpyrimidine kinase compare
PP_4943 -3.2 -3.1 putative Glycosyl transferase compare
PP_1912 -3.2 -7.3 Phosphate acyltransferase compare
PP_4828 -3.1 -1.8 Precorrin-8X methylmutase compare
PP_0393 -3.1 -2.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0735 -3.0 -2.5 molybdopterin-synthase adenylyltransferase compare
PP_0292 -2.9 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5104 -2.9 -7.2 thiazole synthase compare
PP_2370 -2.8 -3.2 conserved protein of unknown function compare
PP_0291 -2.7 -2.9 conserved protein of unknown function compare
PP_5155 -2.7 -4.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4829 -2.7 -2.5 putative precorrin-3B synthase compare
PP_1994 -2.6 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_4700 -2.6 -2.5 pantothenate synthetase compare
PP_0691 -2.6 -3.9 Glutamate 5-kinase compare
PP_0888 -2.5 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_1677 -2.5 -6.5 Adenosyl-cobyric acid synthase compare
PP_4830 -2.4 -6.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_2414 -2.4 -2.1 conserved exported protein of unknown function compare
PP_5217 -2.4 -13.4 Polyphosphate kinase compare
PP_1215 -2.4 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_3506 -2.2 -3.9 Magnesium chelatase, subunit ChII compare
PP_2402 -2.2 -2.9 putative Sensor histidine kinase compare
PP_2388 -2.1 -4.4 Transporter, LysE family compare
PP_1676 -2.1 -5.1 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3662 -2.1 -8.6 conserved protein of unknown function compare
PP_1493 -2.1 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4098 -2.0 -2.4 UvrABC system protein C compare
PP_1348 -2.0 -5.0 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1681 -2.0 -9.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_1679 -2.0 -2.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1678 -2.0 -3.4 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4832 -2.0 -3.3 Precorrin-6x reductase compare
PP_3241 -2.0 -1.8 conserved exported protein of unknown function compare
PP_1673 -1.9 -6.4 cobyrinate a,c-diamide synthase compare
PP_1664 -1.9 -4.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_4826 -1.9 -5.5 Precorrin-3B C17-methyltransferase compare
PP_1675 -1.9 -7.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5198 -1.8 -3.5 conserved protein of unknown function compare
PP_4364 -1.8 -3.2 putative Anti-sigma F factor antagonist compare
PP_2390 -1.8 -7.4 Transcriptional regulator, LysR family compare
PP_1672 -1.8 -5.3 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4977 -1.8 -8.3 5,10-methylenetetrahydrofolate reductase compare
PP_3507 -1.8 -9.3 Aerobic cobaltochelatase subunit CobN compare
PP_1381 -1.7 -1.7 4-carboxymuconolactone decarboxylase compare
PP_2000 -1.6 -1.6 amidophosphoribosyl transferase compare
PP_3505 -1.6 -2.6 conserved protein of unknown function compare
PP_4122 -1.6 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0406 -1.6 -6.0 Nucleotidyltransferase family protein compare
PP_4922 -1.6 -9.3 Phosphomethylpyrimidine synthase compare
PP_1268 -1.6 -3.2 putative HtrA suppressor protein sohA compare
PP_4827 -1.6 -7.6 Precorrin-2 C(20)-methyltransferase compare
PP_0001 -1.5 -1.3 probable chromosome-partitioning protein compare
PP_1764 -1.5 -6.0 Phosphoglycolate phosphatase 2 compare
PP_2375 -1.5 -9.2 cobalamin-dependent methionine synthase compare
PP_0356 -1.5 -6.2 malate synthase G compare
PP_1468 -1.5 -1.6 Tyrosine recombinase XerD compare
PP_4532 -1.5 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4517 -1.5 -2.1 conserved protein of unknown function compare
PP_3508 -1.5 -4.1 Protein CobW compare
PP_1428 -1.5 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_2088 -1.4 -4.5 RNA polymerase sigma factor SigX compare
PP_2336 -1.4 -3.1 aconitate hydratase 1 compare
PP_1783 -1.4 -0.9 dTDP-glucose pyrophosphorylase compare
PP_3484 -1.4 -4.8 Response regulator receiver protein compare
PP_1426 -1.4 -7.8 L-aspartate oxidase compare
PP_3248 -1.4 -2.0 Dyp-type peroxidase family protein compare
PP_5203 -1.3 -5.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_5338 -1.3 -2.2 aspartate ammonia-lyase compare
PP_0435 -1.3 -8.8 Peptidase, M23/M37 family compare
PP_0063 -1.3 -2.3 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0434 -1.3 -8.5 Anhydro-N-acetylmuramic acid kinase compare
PP_5216 -1.3 -1.6 exopolyphosphatase compare
PP_4895 -1.3 -1.5 tRNA dimethylallyltransferase compare
PP_0405 -1.3 -9.9 conserved protein of unknown function compare
PP_4340 -1.2 -2.7 response regulator for chemotactic signal transduction compare
PP_4699 -1.2 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4120 -1.2 -3.5 NADH-quinone oxidoreductase subunit B compare
PP_1629 -1.2 -3.8 Protein RecA compare
PP_1355 -1.2 -10.0 Muropeptide permease AmpG compare
PP_4480 -1.2 -6.3 arginine N-succinyltransferase, subunit alpha compare
PP_2337 -1.2 -2.0 aconitate isomerase compare
PP_3052 -1.2 -1.6 conserved protein of unknown function compare
PP_4917 -1.2 -3.0 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5583 -1.1 -1.8 conserved protein of unknown function compare
PP_2433 -1.1 -1.7 conserved protein of unknown function compare
PP_1674 -1.1 -3.0 5,6-dimethylbenzimidazole synthase compare
PP_2145 -1.1 -3.5 beta-N-acetylglucosaminidase compare
PP_4546 -1.1 -2.9 ATP-dependent helicase HrpA compare
PP_4392 -1.1 -4.8 chemotaxis protein methyltransferase compare
PP_3903 -1.1 -1.4 conserved protein of unknown function compare
PP_4695 -1.1 -4.8 Sensory box histidine kinase compare
PP_4004 -1.0 -2.6 DNA translocase FtsK compare
PP_4008 -1.0 -5.3 ATP-dependent serine protease compare
PP_1142 -1.0 -1.2 conserved protein of unknown function compare
PP_1734 -1.0 -2.0 Probable septum site-determining protein MinC compare
PP_1654 -1.0 -2.6 cysteine synthase B compare
PP_0855 -1.0 -1.4 conserved protein of unknown function compare
PP_1309 -1.0 -4.2 conserved exported protein of unknown function compare
PP_3821 -1.0 -3.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3539 -1.0 -2.8 putative Transcriptional regulator compare
PP_0986 -1.0 -3.2 aminomethyltransferase compare
PP_2029 -1.0 -2.2 von Willebrand factor type A domain protein compare
PP_2253 -1.0 -1.7 Transcriptional regulator, GntR family compare
PP_0997 -0.9 -4.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_0630 -0.9 -1.0 DNA gyrase inhibitor YacG compare
PP_4993 -0.9 -2.3 Glutathione synthetase compare
PP_0086 -0.9 -2.9 conserved protein of unknown function compare
PP_3590 -0.9 -4.4 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2132 -0.9 -2.5 Universal stress protein compare
PP_5604 -0.9 -1.9 putative subtilisin-like serine protease compare
PP_4131 -0.9 -4.0 NADH-quinone oxidoreductase subunit N compare
PP_5035 -0.9 -3.7 Histidine utilization repressor compare
PP_4338 -0.9 -3.7 Chemotaxis histidine kinase CheA compare
PP_0218 -0.9 -5.0 Sensory box protein compare
PP_5SB -0.9 -2.1 5S ribosomal RNA compare
PP_2203 -0.9 -1.5 conserved protein of unknown function compare
PP_4824 -0.9 -3.4 Sensor histidine kinase/response regulator compare
PP_4642 -0.9 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_0988 -0.9 -6.1 glycine dehydrogenase compare
PP_4124 -0.9 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_4342 -0.9 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_3102 -0.9 -3.3 conserved protein of unknown function compare
PP_0989 -0.9 -2.2 glycine cleavage system H protein 1 compare
PP_1917 -0.9 -4.1 4-amino-4-deoxychorismate lyase compare
PP_1217 -0.9 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0612 -0.9 -3.9 FAD-dependent glycine/D-amino acid oxidase compare
PP_5230 -0.9 -2.2 Tyrosine recombinase XerC compare
PP_t10 -0.9 -1.9 tRNA-Pro compare
PP_4332 -0.8 -4.1 Chemotaxis protein CheW compare
PP_5227 -0.8 -3.5 diaminopimelate decarboxylase compare
PP_0195 -0.8 -1.5 conserved protein of unknown function compare
PP_0914 -0.8 -5.5 GGDEF domain protein compare
PP_4988 -0.8 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4734 -0.8 -3.9 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4681 -0.8 -2.0 conserved protein of unknown function compare
PP_5748 -0.8 -1.9 cytochrome c heme lyase subunit compare
PP_5212 -0.8 -3.0 Oxidoreductase, iron-sulfur-binding compare
PP_1303 -0.8 -3.6 Sulfate adenylyltransferase subunit 2 compare
PP_2136 -0.8 -2.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1454 -0.8 -3.0 conserved protein of unknown function compare
PP_4379 -0.8 -2.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2716 -0.8 -1.8 arsenate reductase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Hydroxy-L-Proline in Pseudomonas putida KT2440

For carbon source Hydroxy-L-Proline across organisms