Experiment set12IT010 for Agrobacterium fabrum C58

Compare to:

LB_cucumber_cotlyden

200 most important genes:

  gene name fitness t score description  
Atu6098 -3.8 -1.6 transcriptional regulator, HTH family compare
Atu1030 -3.7 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0399 -3.2 -7.2 dihydroorotase compare
Atu3763 -3.1 -2.1 hypothetical protein compare
Atu0723 -2.9 -2.8 FAD dependent oxidoreductase compare
Atu0225 -2.8 -1.6 hypothetical protein compare
Atu0030 -2.5 -2.3 phosphocarrier protein HPr compare
Atu1359 -2.4 -1.6 dnaK deletion suppressor protein compare
Atu0400 -2.3 -4.4 orotate phosphoribosyltransferase compare
Atu2125 -2.1 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0331 -2.1 -4.2 sigma-54 modulation protein compare
Atu3469 -2.0 -4.0 phosphoglyceromutase compare
Atu0141 -1.9 -1.7 cytochrome O ubiquinol oxidase subunit I compare
Atu0769 -1.8 -2.3 protoheme IX farnesyltransferase compare
Atu0086 -1.6 -1.7 ribosome-binding factor A compare
Atu0486 -1.6 -4.3 dihydroorotate dehydrogenase compare
Atu4317 -1.5 -2.9 TetR family transcriptional regulator compare
Atu3739 -1.4 -3.2 phosphoglycerate kinase compare
Atu4072 -1.4 -2.1 nodulation protein N compare
Atu0298 -1.2 -5.5 orotidine 5 compare
Atu2207 -1.2 -2.8 two component sensor kinase compare
Atu3730 -1.1 -1.4 hypothetical protein compare
Atu0421 -1.1 -1.5 ABC transporter, membrane spanning protein compare
Atu0659 -1.1 -3.9 NTP pyrophosphohydrolase, MutT family compare
Atu4173 -1.1 -2.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu0658 -1.1 -6.8 phosphate permease compare
Atu1620 -1.0 -6.4 triosephosphate isomerase compare
Atu8087 -1.0 -0.9 putative peptidoglycan binding protein compare
Atu0824 -1.0 -1.3 hypothetical protein compare
Atu0039 -1.0 -1.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu2017 -1.0 -1.2 hypothetical protein compare
Atu2439 -1.0 -1.1 hypothetical protein compare
Atu3754 -1.0 -2.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2832 -1.0 -3.0 tRNA modification GTPase compare
Atu0036 -1.0 -2.1 hypothetical protein compare
Atu1503 -0.9 -1.2 hypothetical protein compare
Atu0269 -0.9 -2.9 exodeoxyribonuclease VII large subunit compare
Atu0189 -0.9 -1.6 ABC transporter, membrane spanning protein (peptide) compare
Atu3481 -0.9 -5.1 enoyl-CoA hydratase compare
Atu0043 -0.9 -1.9 imidazoleglycerol-phosphate dehydratase compare
Atu0149 -0.9 -3.0 enoyl-(acyl-carrier-protein) reductase compare
Atu0050 -0.9 -2.7 two component response regulator compare
Atu0062 -0.9 -4.1 transcriptional regulator, ROK family compare
Atu0886 -0.8 -1.2 hypothetical protein compare
Atu1163 -0.8 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1364 -0.8 -3.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2286 -0.8 -1.3 hypothetical protein compare
Atu2800 -0.8 -1.6 precorrin-3B C17-methyltransferase compare
Atu8138 -0.8 -1.5 hypothetical protein compare
Atu1417 -0.8 -4.5 enoyl-CoA hydratase compare
Atu6036 -0.8 -0.6 entry-exclusion protein compare
Atu2554 -0.8 -1.4 lysyl-tRNA synthetase compare
Atu0434 -0.8 -1.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2803 -0.8 -2.9 Cobalamin biosynthesis associated protein compare
Atu0142 -0.8 -1.3 cytochrome o ubiquinol oxidase subunit II compare
Atu1307 -0.8 -2.4 dihydroorotase compare
Atu4226 -0.8 -4.9 transcriptional regulator compare
Atu2450 -0.7 -2.3 hypothetical protein compare
Atu2115 -0.7 -4.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2235 -0.7 -1.9 hypothetical protein compare
Atu3480 -0.7 -4.9 hydroxymethylglutaryl-CoA lyase compare
Atu1581 -0.7 -1.3 hypothetical protein compare
Atu1847 -0.7 -1.5 hypothetical protein compare
Atu1344 -0.7 -1.6 hypothetical protein compare
Atu3707 -0.7 -2.0 phosphoserine aminotransferase compare
Atu2442 -0.7 -2.2 hypothetical protein compare
Atu0184 -0.7 -1.2 glucokinase compare
Atu0040 -0.7 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2640 -0.7 -2.4 hypothetical protein compare
Atu4514 -0.7 -2.5 RpiR family transcriptional regulator compare
Atu2824 -0.7 -2.1 hypothetical protein compare
Atu2798 -0.7 -2.3 precorrin-6y methyltransferase compare
Atu2827 -0.7 -1.5 hypothetical protein compare
Atu3733 -0.7 -1.6 hypothetical protein compare
Atu0029 -0.7 -3.3 S-adenosylhomocysteine hydrolase compare
Atu3479 -0.7 -4.5 3-methylcrotonyl-CoA carboxylase subunit alpha compare
Atu0784 -0.7 -2.0 hypothetical protein compare
Atu3727 -0.7 -2.4 hypothetical protein compare
Atu0422 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu1141 -0.7 -4.0 Phosphoribosylglycinamide synthetase compare
Atu1110 -0.6 -2.1 cytosol aminopeptidase compare
Atu2584 -0.6 -2.2 hypothetical protein compare
Atu1446 -0.6 -1.2 two component response regulator compare
Atu2799 -0.6 -2.7 precorrin-6x reductase compare
Atu1678 -0.6 -3.1 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu1701 -0.6 -1.4 protein-L-isoaspartate O-methyltransferase compare
Atu1685 -0.6 -0.7 hypothetical protein compare
Atu4418 -0.6 -2.5 glutaryl-CoA dehydrogenase compare
Atu2239 -0.6 -1.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1588 -0.6 -3.1 homoserine dehydrogenase compare
Atu1513 -0.6 -2.5 ABC excinuclease subunit A compare
Atu1140 -0.6 -2.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1308 -0.6 -2.8 aspartate carbamoyl transferase catalytic subunit compare
Atu3423 -0.6 -1.8 hypothetical protein compare
Atu0876 -0.6 -1.1 superoxide dismutase compare
Atu5146 -0.6 -1.1 hypothetical protein compare
Atu1846 -0.6 -1.1 hypothetical protein compare
Atu0572 -0.6 -2.1 hypothetical protein compare
Atu0115 -0.6 -0.7 hypothetical protein compare
Atu1099 -0.6 -2.6 hypothetical protein compare
Atu3249 -0.6 -3.3 septum formation inhibitor compare
Atu3476 -0.6 -2.3 AsnC family transcriptional regulator compare
Atu8166 -0.6 -1.8 hypothetical protein compare
Atu1339 -0.6 -1.4 ribonuclease E compare
Atu2433 -0.6 -0.8 hypothetical protein compare
Atu0051 -0.6 -2.3 two component sensor kinase compare
Atu1495 -0.6 -1.9 hypothetical protein compare
Atu4148 -0.6 -2.5 UDP-glucuronic acid epimerase compare
Atu2633 -0.6 -1.1 RhtB family transporter compare
Atu2809 -0.6 -2.8 cobalamin biosynthesis protein compare
Atu1803 -0.5 -3.1 cold shock protein compare
Atu2831 -0.5 -2.5 glucose inhibited division protein A compare
Atu1774 -0.5 -2.2 ABC transporter, substrate binding protein (peptide) compare
Atu2790 -0.5 -1.2 3-isopropylmalate dehydratase, small subunit compare
Atu3740 -0.5 -3.9 fructose bisphosphate aldolase compare
Atu3608 -0.5 -2.9 hypothetical protein compare
Atu2067 -0.5 -0.7 hypothetical protein compare
Atu2237 -0.5 -1.7 cytochrome c1 compare
Atu4139 -0.5 -1.7 hypothetical protein compare
Atu1490 -0.5 -1.4 arsenate reductase compare
Atu0565 -0.5 -2.4 hypothetical protein compare
Atu5075 -0.5 -2.5 GntR family transcriptional regulator compare
Atu8130 -0.5 -2.9 hypothetical protein compare
Atu2026 -0.5 -2.2 exodeoxyribonuclease V compare
Atu1031 -0.5 -1.6 hypothetical protein compare
Atu1844 -0.5 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu2001 -0.5 -3.1 excinuclease ABC subunit B compare
Atu0703 -0.5 -1.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1380 -0.5 -2.6 zinc metallopeptidase compare
Atu0190 -0.5 -2.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1449 -0.5 -2.1 potassium uptake protein compare
Atu3485 -0.5 -3.3 short chain dehydrogenase compare
Atu0297 -0.5 -1.9 hypothetical protein compare
Atu2650 -0.5 -3.6 glycerol-3-phosphate dehydrogenase compare
Atu1694 -0.5 -1.1 hypothetical protein compare
Atu1077 -0.5 -1.7 DNA repair protein compare
Atu3461 -0.5 -1.6 GntR family transcriptional regulator compare
Atu1173 -0.5 -3.4 MFS permease compare
Atu0640 -0.5 -1.1 hypothetical protein compare
Atu2327 -0.5 -2.8 hypothetical protein compare
Atu0049 -0.5 -1.9 hypothetical protein compare
Atu4053 -0.5 -0.9 succinoglycan biosynthesis protein compare
Atu0401 -0.5 -2.1 fructokinase compare
Atu1559 -0.5 -1.5 hypothetical protein compare
Atu1182 -0.5 -1.3 hypothetical protein compare
Atu0322 -0.5 -2.1 enoyl CoA hydratase compare
Atu8168 -0.5 -1.1 hypothetical protein compare
Atu3755 -0.5 -1.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3248 -0.5 -3.5 cell division inhibitor compare
Atu2796 -0.5 -2.4 precorrin-4 C11-methyltransferase compare
Atu2582 -0.5 -2.8 UDP-glucose/GDP-mannose dehydrogenase compare
Atu3963 -0.5 -2.7 GntR family transcriptional regulator compare
Atu8167 -0.5 -3.0 putative transmembrane protein compare
Atu4290 -0.5 -0.8 hypothetical protein compare
Atu1537 -0.5 -2.9 cytochrome-c oxidase, FixN chain compare
Atu0038 -0.5 -1.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1204 -0.5 -2.7 potassium uptake protein compare
Atu0419 -0.5 -0.9 two component sensor kinase compare
Atu0918 -0.4 -2.2 hypothetical protein compare
Atu1447 -0.4 -0.9 two component sensor kinase compare
Atu0983 -0.4 -1.1 hypothetical protein compare
Atu3472 -0.4 -1.7 2-oxoisovalerate dehydrogenase subunit beta compare
Atu0508 -0.4 -1.6 PH Adaption potassium efflux system compare
Atu1759 -0.4 -3.4 L-serine dehydratase compare
Atu5464 -0.4 -3.0 IclR family transcriptional regulator compare
Atu2616 -0.4 -2.0 hypothetical protein compare
Atu0773 -0.4 -2.0 surfeit 1 compare
Atu2104 -0.4 -1.8 hypothetical protein compare
Atu1019 -0.4 -1.3 hypothetical protein compare
Atu5160 -0.4 -0.8 transcriptional regulator protein compare
Atu2728 -0.4 -1.5 beta (1-->2) glucan export ATP-binding protein compare
Atu0690 -0.4 -1.0 hypothetical protein compare
Atu1781 -0.4 -1.6 hypothetical protein compare
Atu8179 -0.4 -1.9 hypothetical protein compare
Atu1529 -0.4 -1.7 nitrogen fixation protein FixH compare
Atu0017 -0.4 -1.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3478 -0.4 -2.7 3-methylcrotonoyl-CoA carboxylase beta subunit compare
Atu1536 -0.4 -1.6 cytochrome C oxidase, FixO chain compare
Atu4824 -0.4 -2.5 IclR family transcriptional regulator compare
Atu4346 -0.4 -2.8 hypothetical protein compare
Atu0499 -0.4 -2.3 hypothetical protein compare
Atu0488 -0.4 -1.2 hypothetical protein compare
Atu4677 -0.4 -0.8 hypothetical protein compare
Atu6133 -0.4 -2.4 conserved hypothetical protein compare
Atu3400 -0.4 -1.7 hypothetical protein compare
Atu2382 -0.4 -1.4 hypothetical protein compare
Atu1129 -0.4 -2.3 excinuclease ABC chain C compare
Atu1714 -0.4 -0.8 exonuclease III compare
Atu5451 -0.4 -0.6 hypothetical protein compare
Atu5023 -0.4 -3.4 hypothetical protein compare
Atu1565 -0.4 -1.4 serine acetyltransferase compare
Atu0677 -0.4 -0.7 hypothetical protein compare
Atu2801 -0.4 -1.9 precorrin-2 C20 methyltransferase compare
Atu0973 -0.4 -2.3 cycH protein compare
Atu8159 -0.4 -1.3 hypothetical protein compare
Atu1607 -0.4 -1.8 DNA repair protein compare
Atu0185 -0.4 -2.4 methylglyoxal synthase compare
Atu6039 -0.4 -1.4 conjugal transfer protein compare
Atu4773 -0.4 -0.6 two component response regulator compare
Atu1123 -0.4 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in lb_cucumber_cotlyden experiments

For lb_cucumber_cotlyden cucumber_cotlyden across organisms