Experiment set12IT007 for Pseudomonas putida KT2440

Compare to:

2-methyl-1-butanol carbon source

200 most important genes:

  gene name fitness t score description  
PP_2675 -6.6 -6.3 Cytochrome c-type protein compare
PP_0293 -5.8 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -5.5 -7.3 Ornithine carbamoyltransferase compare
PP_4724 -5.3 -7.3 Carbamoyl-phosphate synthase small chain compare
PP_0290 -5.1 -9.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2217 -5.0 -5.9 enoyl-CoA hydratase compare
PP_1985 -4.9 -5.1 3-isopropylmalate dehydratase large subunit compare
PP_1988 -4.9 -8.5 3-isopropylmalate dehydrogenase compare
PP_2168 -4.9 -11.5 Transaldolase compare
PP_0292 -4.9 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0422 -4.8 -7.4 Indole-3-glycerol phosphate synthase compare
PP_0376 -4.7 -9.8 Coenzyme PQQ synthesis protein E compare
PP_4723 -4.7 -14.9 Carbamoyl-phosphate synthase large chain compare
PP_0966 -4.7 -11.2 Histidinol dehydrogenase compare
PP_0787 -4.7 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0417 -4.7 -17.9 Anthranilate synthase component 1 compare
PP_4679 -4.6 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -4.6 -13.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5095 -4.6 -3.2 pyrroline-5-carboxylate reductase compare
PP_2665 -4.5 -5.0 Glycerol metabolism activator compare
PP_2214 -4.5 -6.6 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_4999 -4.5 -3.1 dihydroorotase-like protein compare
PP_5097 -4.5 -14.3 homoserine O-acetyltransferase compare
PP_3511 -4.4 -9.5 Branched-chain-amino-acid aminotransferase compare
PP_2327 -4.4 -8.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2215 -4.3 -7.9 acetyl-CoA acetyltransferase compare
PP_5098 -4.3 -9.2 methionine biosynthesis protein MetW compare
PP_4890 -4.2 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_4678 -4.1 -15.3 Ketol-acid reductoisomerase compare
PP_5015 -4.1 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0421 -4.1 -7.2 Anthranilate phosphoribosyltransferase compare
PP_0184 -4.1 -6.2 Argininosuccinate lyase compare
PP_0164 -4.0 -7.3 conserved protein of unknown function compare
PP_0083 -4.0 -7.2 tryptophan synthase beta chain compare
PP_4799 -4.0 -3.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2682 -4.0 -5.3 Fe-containing alcohol dehydrogenase compare
PP_0967 -4.0 -9.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -4.0 -12.9 Argininosuccinate synthase compare
PP_5185 -3.9 -6.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -3.9 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_2001 -3.9 -8.0 O-succinylhomoserine sulfhydrylase compare
PP_5014 -3.9 -5.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_0381 -3.8 -7.3 Coenzyme PQQ synthesis protein F compare
PP_0378 -3.7 -8.6 Pyrroloquinoline-quinone synthase compare
PP_2337 -3.7 -2.5 aconitate isomerase compare
PP_1995 -3.7 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0339 -3.7 -6.6 Pyruvate dehydrogenase E1 component compare
PP_2334 -3.6 -9.9 2-methylisocitrate lyase compare
PP_2335 -3.6 -9.7 methylcitrate synthase compare
PP_0082 -3.6 -6.8 tryptophan synthase alpha chain compare
PP_5346 -3.5 -9.6 pyruvate carboxylase subunit B compare
PP_0420 -3.5 -8.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0691 -3.5 -4.9 Glutamate 5-kinase compare
PP_5289 -3.4 -6.3 Acetylglutamate kinase compare
PP_0965 -3.4 -10.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4696 -3.3 -5.0 Nitrogen regulation protein NR(I) compare
PP_4909 -3.2 -8.0 phosphoserine phosphatase compare
PP_1025 -3.2 -11.7 2-isopropylmalate synthase compare
PP_4120 -3.1 -5.2 NADH-quinone oxidoreductase subunit B compare
PP_1231 -3.1 -6.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4131 -3.1 -8.2 NADH-quinone oxidoreductase subunit N compare
PP_0379 -3.1 -6.5 Coenzyme PQQ synthesis protein B compare
PP_4122 -3.1 -3.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0289 -3.0 -6.8 Imidazoleglycerol-phosphate dehydratase compare
PP_2213 -3.0 -10.0 putative acyl-CoA synthetase compare
PP_0377 -3.0 -2.9 coenzyme PQQ synthesis protein D compare
PP_0566 -2.9 -1.6 translation-related factor compare
PP_5347 -2.9 -9.9 pyruvate carboxylase subunit A compare
PP_5128 -2.9 -7.4 Dihydroxy-acid dehydratase compare
PP_4009 -2.8 -3.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_1994 -2.7 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_2336 -2.7 -2.6 aconitate hydratase 1 compare
PP_0368 -2.7 -6.7 putative Acyl-CoA dehydrogenase compare
PP_0232 -2.6 -1.7 ATP-binding taurine transporter subunit compare
PP_4699 -2.5 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4364 -2.5 -4.3 putative Anti-sigma F factor antagonist compare
PP_4700 -2.5 -2.9 pantothenate synthetase compare
PP_4984 -2.5 -9.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2674 -2.4 -8.4 quinoprotein ethanol dehydrogenase compare
PP_4129 -2.4 -4.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5155 -2.3 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5348 -2.3 -7.7 Transcriptional regulator, LysR family compare
PP_0363 -2.2 -9.7 8-amino-7-oxononanoate synthase compare
PP_2388 -2.1 -5.9 Transporter, LysE family compare
PP_4121 -2.1 -5.4 NADH-quinone oxidoreductase subunit C/D compare
PP_1734 -2.1 -2.0 Probable septum site-determining protein MinC compare
PP_2671 -2.1 -8.5 Sensor histidine kinase compare
PP_1826 -2.1 -2.9 Hydrolase, isochorismatase family compare
PP_5303 -2.1 -5.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4993 -2.0 -4.0 Glutathione synthetase compare
PP_0362 -2.0 -9.7 Biotin synthase compare
PP_4320 -1.9 -4.9 cytochrome c-type biogenesis protein compare
PP_1733 -1.9 -3.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_2672 -1.9 -5.5 Transcriptional activator protein ExaE compare
PP_0356 -1.9 -4.9 malate synthase G compare
PP_0365 -1.9 -7.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4124 -1.9 -4.5 NADH-quinone oxidoreductase subunit G compare
PP_4695 -1.8 -8.1 Sensory box histidine kinase compare
PP_0833 -1.8 -1.2 queuine tRNA-ribosyltransferase compare
PP_2676 -1.8 -6.3 putative Periplasmic binding protein compare
PP_1217 -1.8 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4943 -1.8 -3.0 putative Glycosyl transferase compare
PP_2211 -1.8 -5.3 Transcriptional regulator, AraC family compare
PP_4804 -1.7 -3.1 RlpA-like lipoprotein compare
PP_4342 -1.7 -3.3 flagellar synthesis regulator, putative ATPase compare
PP_1233 -1.7 -5.3 sulfurtransferase compare
PP_2390 -1.7 -7.3 Transcriptional regulator, LysR family compare
PP_3999 -1.7 -6.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2371 -1.7 -6.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5538 -1.7 -5.6 putative ABC transporter, substrate-binding protein compare
PP_t12 -1.7 -1.6 tRNA-Thr compare
PP_2136 -1.7 -2.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0380 -1.6 -3.5 Coenzyme PQQ synthesis protein A compare
PP_0435 -1.6 -9.9 Peptidase, M23/M37 family compare
PP_0366 -1.6 -5.4 dethiobiotin synthetase compare
PP_0888 -1.6 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_2679 -1.6 -8.4 quinoprotein ethanol dehydrogenase compare
PP_4726 -1.5 -3.5 Chaperone protein DnaJ compare
PP_5748 -1.5 -2.2 cytochrome c heme lyase subunit compare
PP_2683 -1.5 -2.2 putative sensory box histidine kinase/response regulator compare
PP_0364 -1.5 -5.7 pimeloyl-[acp] methyl ester esterase compare
PP_0986 -1.5 -3.7 aminomethyltransferase compare
PP_3484 -1.5 -4.4 Response regulator receiver protein compare
PP_2667 -1.5 -7.7 ABC transporter compare
PP_4126 -1.5 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_2664 -1.4 -9.0 putative hybrid sensor and regulator, histidine kinase compare
PP_0988 -1.4 -8.7 glycine dehydrogenase compare
PP_4515 -1.4 -4.8 Transcriptional regulator, MarR family compare
PP_0406 -1.4 -3.7 Nucleotidyltransferase family protein compare
PP_0165 -1.4 -9.3 GGDEF domain protein compare
PP_3662 -1.4 -6.5 conserved protein of unknown function compare
PP_1629 -1.4 -3.7 Protein RecA compare
PP_5528 -1.4 -2.0 conserved protein of unknown function compare
PP_1291 -1.4 -5.7 PhoH family protein compare
PP_4977 -1.3 -7.5 5,10-methylenetetrahydrofolate reductase compare
PP_5217 -1.3 -8.7 Polyphosphate kinase compare
PP_1654 -1.3 -3.3 cysteine synthase B compare
PP_1672 -1.3 -4.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2669 -1.3 -6.9 putative Outer membrane protein compare
PP_2668 -1.3 -3.4 ABC efflux transporter, ATP-binding protein compare
PP_0989 -1.3 -2.9 glycine cleavage system H protein 1 compare
PP_0801 -1.3 -1.5 conserved exported protein of unknown function compare
PP_2356 -1.3 -7.2 putative Phytochrome family protein compare
PP_1678 -1.2 -2.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_0434 -1.2 -7.8 Anhydro-N-acetylmuramic acid kinase compare
PP_1493 -1.2 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1675 -1.2 -4.8 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2868 -1.2 -5.0 Transcriptional regulator, Cro/CI family compare
PP_0291 -1.2 -1.6 conserved protein of unknown function compare
PP_1729 -1.2 -2.3 conserved protein of unknown function compare
PP_2145 -1.2 -5.1 beta-N-acetylglucosaminidase compare
PP_3637 -1.2 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4130 -1.2 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3946 -1.2 -1.0 HTH-type transcriptional repressor NicR compare
PP_1679 -1.2 -1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0166 -1.2 -7.2 HlyD family secretion protein compare
PP_4519 -1.2 -8.2 Agglutination protein compare
PP_1428 -1.2 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_0997 -1.2 -5.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_3190 -1.2 -3.4 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_5035 -1.2 -3.3 Histidine utilization repressor compare
PP_3507 -1.2 -7.5 Aerobic cobaltochelatase subunit CobN compare
PP_1387 -1.2 -3.0 Probable HTH-type transcriptional regulator TtgR compare
PP_1783 -1.1 -1.1 dTDP-glucose pyrophosphorylase compare
PP_1355 -1.1 -8.6 Muropeptide permease AmpG compare
PP_2402 -1.1 -1.7 putative Sensor histidine kinase compare
PP_1353 -1.1 -0.8 conserved membrane protein of unknown function compare
PP_0168 -1.1 -9.3 putative surface adhesion protein compare
PP_3455 -1.1 -3.8 Multidrug efflux RND membrane fusion protein compare
PP_1186 -1.1 -0.7 two component system DNA-binding transcriptional dual regulator compare
PP_4143 -1.1 -4.5 conserved protein of unknown function compare
PP_2328 -1.1 -3.7 Phosphoadenosine phosphosulfate reductase compare
PP_3506 -1.1 -2.9 Magnesium chelatase, subunit ChII compare
PP_4829 -1.1 -1.9 putative precorrin-3B synthase compare
PP_2333 -1.1 -2.2 GntR family transcriptional regulator compare
PP_4961 -1.1 -1.5 putative Lipoprotein compare
PP_3821 -1.1 -4.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0167 -1.1 -8.0 Toxin secretion ATP-binding protein compare
PP_4832 -1.1 -1.7 Precorrin-6x reductase compare
PP_5203 -1.1 -4.2 5-formyltetrahydrofolate cyclo-ligase compare
PP_3491 -1.0 -6.5 Enoly-coenzyme A hydratase/isomerase family protein compare
PP_5161 -1.0 -4.1 putative lysophospholipase compare
PP_5311 -1.0 -4.9 putative signal transduction protein compare
PP_5310 -1.0 -3.4 junction-specific ATP-dependent DNA helicase compare
PP_2354 -1.0 -6.1 Sensory box histidine kinase/response regulator compare
PP_3248 -1.0 -1.7 Dyp-type peroxidase family protein compare
PP_5230 -1.0 -1.9 Tyrosine recombinase XerC compare
PP_1681 -1.0 -5.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2835 -1.0 -2.7 putative oxidoreductase compare
PP_1553 -1.0 -2.9 conserved protein of unknown function compare
PP_2414 -1.0 -2.3 conserved exported protein of unknown function compare
PP_5104 -1.0 -4.9 thiazole synthase compare
PP_0848 -1.0 -1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2433 -1.0 -1.2 conserved protein of unknown function compare
PP_3649 -1.0 -2.2 Transcriptional regulator, GntR family compare
PP_4827 -1.0 -5.5 Precorrin-2 C(20)-methyltransferase compare
PP_2720 -1.0 -1.3 conserved protein of unknown function compare
PP_1309 -1.0 -5.3 conserved exported protein of unknown function compare
PP_2378 -1.0 -1.8 Fe/S biogenesis protein NfuA compare
PP_4895 -1.0 -1.4 tRNA dimethylallyltransferase compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source 2-methyl-1-butanol in Pseudomonas putida KT2440

For carbon source 2-methyl-1-butanol across organisms