Experiment set12IT006 for Pseudomonas putida KT2440

Compare to:

Beta-alanine carbon source

200 most important genes:

  gene name fitness t score description  
PP_5659 -8.1 -5.6 protein of unknown function compare
PP_0597 -7.7 -9.2 methylmalonate-semialdehyde dehydrogenase conserved
PP_0966 -7.2 -11.0 Histidinol dehydrogenase compare
PP_2168 -7.2 -5.0 Transaldolase compare
PP_5015 -7.1 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4890 -7.1 -8.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0422 -7.0 -8.3 Indole-3-glycerol phosphate synthase compare
PP_4678 -6.9 -15.4 Ketol-acid reductoisomerase compare
PP_5098 -6.9 -8.2 methionine biosynthesis protein MetW compare
PP_0595 -6.9 -12.4 Transcriptional regulator, LysR family conserved
PP_1988 -6.5 -10.5 3-isopropylmalate dehydrogenase compare
PP_5271 -6.5 -10.8 DNA-binding transcriptional dual regulator, leucine-binding conserved
PP_0417 -6.4 -22.4 Anthranilate synthase component 1 compare
PP_0596 -6.4 -14.3 Omega-amino acid--pyruvate aminotransferase conserved
PP_4679 -6.3 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -6.3 -4.4 Argininosuccinate synthase compare
PP_4116 -6.3 -14.1 isocitrate lyase compare
PP_0967 -6.3 -12.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1995 -6.2 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5270 -6.1 -9.2 D-amino-acid:quinone oxidoreductase (deaminating) conserved
PP_1985 -6.1 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_4680 -6.0 -17.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -5.9 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5097 -5.9 -16.1 homoserine O-acetyltransferase compare
PP_5185 -5.8 -7.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5014 -5.8 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0965 -5.8 -11.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -5.8 -11.4 Branched-chain-amino-acid aminotransferase compare
PP_5289 -5.8 -5.6 Acetylglutamate kinase compare
PP_4724 -5.7 -6.8 Carbamoyl-phosphate synthase small chain compare
PP_0412 -5.7 -11.6 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_0421 -5.7 -9.1 Anthranilate phosphoribosyltransferase compare
PP_0289 -5.5 -9.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1231 -5.4 -9.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5217 -5.4 -14.4 Polyphosphate kinase compare
PP_0411 -5.3 -7.6 Polyamine ABC transporter, ATP-binding protein compare
PP_4723 -5.3 -13.8 Carbamoyl-phosphate synthase large chain compare
PP_0082 -5.1 -3.5 tryptophan synthase alpha chain compare
PP_2001 -5.1 -8.6 O-succinylhomoserine sulfhydrylase compare
PP_0414 -4.9 -4.4 Polyamine ABC transporter, permease protein compare
PP_1025 -4.8 -12.1 2-isopropylmalate synthase compare
PP_5085 -4.8 -6.6 malic enzyme B compare
PP_0691 -4.7 -6.2 Glutamate 5-kinase compare
PP_0290 -4.7 -8.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5095 -4.7 -3.2 pyrroline-5-carboxylate reductase compare
PP_0413 -4.7 -14.8 Polyamine ABC transporter, permease protein compare
PP_0292 -4.5 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4999 -4.5 -3.1 dihydroorotase-like protein compare
PP_2217 -4.5 -4.2 enoyl-CoA hydratase compare
PP_5128 -4.4 -8.0 Dihydroxy-acid dehydratase compare
PP_0164 -4.4 -12.1 conserved protein of unknown function compare
PP_1079 -4.4 -6.3 Ornithine carbamoyltransferase compare
PP_2388 -4.3 -4.6 Transporter, LysE family compare
PP_1986 -4.3 -4.8 3-isopropylmalate dehydratase small subunit compare
PP_0184 -4.2 -6.4 Argininosuccinate lyase compare
PP_3484 -4.2 -6.5 Response regulator receiver protein compare
PP_2433 -4.2 -4.4 conserved protein of unknown function compare
PP_0083 -4.2 -8.4 tryptophan synthase beta chain compare
PP_4799 -4.1 -4.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3999 -4.0 -11.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0787 -3.9 -3.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0410 -3.8 -6.4 DNA-binding response regulator UhpA compare
PP_4120 -3.7 -5.1 NADH-quinone oxidoreductase subunit B compare
PP_2371 -3.6 -7.4 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -3.6 -4.9 Nitrogen regulation protein NR(I) compare
PP_2868 -3.5 -9.8 Transcriptional regulator, Cro/CI family compare
PP_0214 -3.5 -9.2 4-aminobutyrate aminotransferase compare
PP_4480 -3.3 -9.2 arginine N-succinyltransferase, subunit alpha compare
PP_4364 -3.2 -5.3 putative Anti-sigma F factor antagonist compare
PP_4909 -3.2 -8.2 phosphoserine phosphatase compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_0356 -3.0 -5.7 malate synthase G compare
PP_0420 -3.0 -7.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4122 -3.0 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0735 -2.9 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_2327 -2.8 -5.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4699 -2.8 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1679 -2.6 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1678 -2.5 -4.7 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2390 -2.5 -8.2 Transcriptional regulator, LysR family compare
PP_1468 -2.2 -2.3 Tyrosine recombinase XerD compare
PP_4129 -2.2 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1672 -2.2 -4.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0406 -2.2 -7.0 Nucleotidyltransferase family protein compare
PP_4829 -2.2 -3.3 putative precorrin-3B synthase compare
PP_5145 -2.1 -16.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2136 -2.1 -4.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5155 -2.1 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1664 -2.1 -3.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4701 -2.0 -1.7 glucose-6-phosphate isomerase compare
PP_4342 -2.0 -3.2 flagellar synthesis regulator, putative ATPase compare
PP_2328 -2.0 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_0339 -1.9 -4.9 Pyruvate dehydrogenase E1 component compare
PP_4124 -1.9 -4.8 NADH-quinone oxidoreductase subunit G compare
PP_4902 -1.9 -2.0 Oligoribonuclease compare
PP_4121 -1.8 -5.5 NADH-quinone oxidoreductase subunit C/D compare
PP_5216 -1.8 -2.1 exopolyphosphatase compare
PP_3505 -1.8 -2.0 conserved protein of unknown function compare
PP_4130 -1.8 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3662 -1.8 -6.4 conserved protein of unknown function compare
PP_2000 -1.8 -1.7 amidophosphoribosyl transferase compare
PP_4131 -1.7 -5.4 NADH-quinone oxidoreductase subunit N compare
PP_5347 -1.7 -7.7 pyruvate carboxylase subunit A compare
PP_4695 -1.7 -8.6 Sensory box histidine kinase compare
PP_2215 -1.7 -5.3 acetyl-CoA acetyltransferase compare
PP_4977 -1.7 -7.7 5,10-methylenetetrahydrofolate reductase compare
PP_4827 -1.7 -8.7 Precorrin-2 C(20)-methyltransferase compare
PP_4332 -1.6 -6.1 Chemotaxis protein CheW compare
PP_2370 -1.6 -1.9 conserved protein of unknown function compare
PP_0291 -1.6 -1.7 conserved protein of unknown function compare
PP_1233 -1.6 -4.7 sulfurtransferase compare
PP_1681 -1.6 -8.1 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2402 -1.6 -2.7 putative Sensor histidine kinase compare
PP_5035 -1.6 -7.6 Histidine utilization repressor compare
PP_2214 -1.6 -3.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3926 -1.6 -2.3 short-chain dehydrogenase compare
PP_2145 -1.6 -4.3 beta-N-acetylglucosaminidase compare
PP_4392 -1.6 -6.7 chemotaxis protein methyltransferase compare
PP_2375 -1.6 -9.2 cobalamin-dependent methionine synthase compare
PP_1309 -1.5 -5.1 conserved exported protein of unknown function compare
PP_1764 -1.5 -4.7 Phosphoglycolate phosphatase 2 compare
PP_4832 -1.5 -2.4 Precorrin-6x reductase compare
PP_4340 -1.5 -2.6 response regulator for chemotactic signal transduction compare
PP_1783 -1.5 -1.0 dTDP-glucose pyrophosphorylase compare
PP_2414 -1.5 -2.2 conserved exported protein of unknown function compare
PP_0989 -1.5 -3.0 glycine cleavage system H protein 1 compare
PP_4826 -1.5 -4.6 Precorrin-3B C17-methyltransferase compare
PP_0409 -1.5 -4.1 Sensory box histidine kinase compare
PP_4782 -1.4 -5.8 Phosphomethylpyrimidine kinase compare
PP_0213 -1.4 -3.6 succinate-semialdehyde dehydrogenase (NADP+) compare
PP_1734 -1.4 -2.5 Probable septum site-determining protein MinC compare
PP_0248 -1.4 -8.8 Probable alpha-L-glutamate ligase compare
PP_0833 -1.4 -1.3 queuine tRNA-ribosyltransferase compare
PP_4863 -1.4 -7.9 high-affinity branched-chain amino acid transporter, ATP-binding compare
PP_0997 -1.4 -5.9 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_5346 -1.3 -7.0 pyruvate carboxylase subunit B compare
PP_5310 -1.3 -4.6 junction-specific ATP-dependent DNA helicase compare
PP_0988 -1.3 -7.9 glycine dehydrogenase compare
PP_3924 -1.3 -2.2 conserved protein of unknown function compare
PP_0949 -1.3 -4.3 putative ATP-binding protein UPF0042 compare
PP_4098 -1.3 -2.4 UvrABC system protein C compare
PP_4864 -1.3 -7.7 High-affinity branched-chain amino acid transport ATP-binding protein BraF compare
PP_4865 -1.3 -7.3 High-affinity branched-chain amino acid transport system permease protein BraE compare
PP_5146 -1.3 -5.3 RNA pyrophosphohydrolase compare
PP_5575 -1.3 -2.8 conserved protein of unknown function compare
PP_1493 -1.3 -1.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5104 -1.2 -6.0 thiazole synthase compare
PP_0405 -1.2 -9.2 conserved protein of unknown function compare
PP_1677 -1.2 -3.6 Adenosyl-cobyric acid synthase compare
PP_2345 -1.2 -2.2 conserved exported protein of unknown function compare
PP_1675 -1.2 -5.4 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3506 -1.2 -2.9 Magnesium chelatase, subunit ChII compare
PP_1673 -1.2 -3.6 cobyrinate a,c-diamide synthase compare
PP_5090 -1.2 -2.1 putative cell division protein compare
PP_4710 -1.2 -5.4 tRNA pseudouridine 55 synthase compare
PP_1410 -1.2 -1.6 conserved protein of unknown function compare
PP_0022 -1.2 -1.4 hypothetical protein compare
PP_0630 -1.2 -1.1 DNA gyrase inhibitor YacG compare
PP_3359 -1.2 -3.0 putative Hydroxycinnamic acid degradation regulator compare
PP_1984 -1.2 -4.2 Transcriptional regulator, LysR family compare
PP_0025 -1.1 -1.4 hypothetical protein compare
PP_1733 -1.1 -2.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_1185 -1.1 -3.5 Outer membrane protein H1 compare
PP_4866 -1.1 -6.8 High-affinity branched-chain amino acid transport system permease protein BraD conserved
PP_1355 -1.1 -8.6 Muropeptide permease AmpG compare
PP_2335 -1.1 -6.8 methylcitrate synthase compare
PP_4338 -1.1 -4.4 Chemotaxis histidine kinase CheA compare
PP_0948 -1.1 -2.4 Phosphocarrier protein HPr compare
PP_1676 -1.1 -4.2 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0434 -1.1 -5.5 Anhydro-N-acetylmuramic acid kinase compare
PP_2475 -1.1 -3.0 Transcriptional regulator, TetR family compare
PP_3829 -1.1 -3.6 Molybdenum transport system permease protein ModB compare
PP_0435 -1.1 -5.7 Peptidase, M23/M37 family compare
PP_4828 -1.1 -1.1 Precorrin-8X methylmutase compare
PP_0848 -1.0 -2.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4565 -1.0 -7.7 Isocitrate dehydrogenase kinase/phosphatase conserved
PP_4824 -1.0 -4.0 Sensor histidine kinase/response regulator compare
PP_0086 -1.0 -1.6 conserved protein of unknown function compare
PP_0393 -1.0 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5445 -1.0 -2.6 conserved protein of unknown function compare
PP_3507 -1.0 -5.7 Aerobic cobaltochelatase subunit CobN compare
PP_3508 -1.0 -2.6 Protein CobW compare
PP_t29 -1.0 -1.4 tRNA-Ala compare
PP_2087 -1.0 -2.0 CmpX protein compare
PP_4693 -1.0 -2.2 RNA polymerase-binding transcription factor DksA compare
PP_0368 -1.0 -4.7 putative Acyl-CoA dehydrogenase compare
PP_0888 -1.0 -1.1 Photosynthetic apparatus regulatory protein RegA compare
PP_4891 -1.0 -3.0 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4892 -1.0 -3.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3773 -0.9 -2.1 conserved protein of unknown function compare
PP_1941 -0.9 -4.3 conserved protein of unknown function compare
PP_1217 -0.9 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0986 -0.9 -3.3 aminomethyltransferase compare
PP_5203 -0.9 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_5094 -0.9 -2.8 putative enzyme with PLP binding domain compare
PP_2123 -0.9 -4.7 molybdenum::molybdopterin ligase compare
PP_0880 -0.9 -2.6 dipeptide ABC transporter - putative membrane subunit compare
PP_0345 -0.9 -3.2 putative Heptose kinase WapP compare
PP_5230 -0.9 -1.7 Tyrosine recombinase XerC compare
PP_1770 -0.9 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source Beta-alanine in Pseudomonas putida KT2440

For carbon source Beta-alanine across organisms