Experiment set12IT005 for Agrobacterium fabrum C58

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Atu1030 -3.9 -3.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3763 -3.3 -2.2 hypothetical protein compare
Atu4217 -2.9 -2.7 TetR family transcriptional regulator compare
Atu0723 -2.4 -2.8 FAD dependent oxidoreductase compare
Atu0399 -2.3 -6.3 dihydroorotase compare
Atu0894 -2.3 -3.7 ABC transporter, membrane spanning protein compare
Atu2554 -2.1 -3.6 lysyl-tRNA synthetase compare
Atu4317 -2.0 -3.1 TetR family transcriptional regulator compare
Atu0030 -2.0 -2.2 phosphocarrier protein HPr compare
Atu0331 -2.0 -4.0 sigma-54 modulation protein compare
Atu6036 -1.9 -1.6 entry-exclusion protein compare
Atu0486 -1.7 -4.9 dihydroorotate dehydrogenase compare
Atu0031 -1.5 -1.7 PTS system, IIA component compare
Atu0184 -1.5 -2.9 glucokinase compare
Atu0769 -1.4 -2.1 protoheme IX farnesyltransferase compare
Atu0141 -1.4 -1.5 cytochrome O ubiquinol oxidase subunit I compare
Atu0086 -1.4 -1.1 ribosome-binding factor A compare
Atu0422 -1.4 -2.7 ABC transporter, membrane spanning protein compare
Atu1308 -1.4 -4.8 aspartate carbamoyl transferase catalytic subunit compare
Atu3469 -1.3 -2.5 phosphoglyceromutase compare
Atu1810 -1.2 -1.4 hypothetical protein compare
Atu4187 -1.2 -1.5 tRNA-Met compare
Atu2640 -1.2 -4.3 hypothetical protein compare
Atu2207 -1.2 -2.0 two component sensor kinase compare
Atu3739 -1.2 -2.7 phosphoglycerate kinase compare
Atu1891 -1.2 -3.7 cobalamin biosynthesis protein compare
Atu4072 -1.2 -2.1 nodulation protein N compare
Atu0298 -1.1 -5.5 orotidine 5 compare
Atu3009 -1.1 -1.3 exopolysaccharide production protein compare
Atu0977 -1.1 -3.0 serine protease DO-like protease compare
Atu2439 -1.1 -1.4 hypothetical protein compare
Atu3754 -1.0 -6.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1110 -1.0 -3.2 cytosol aminopeptidase compare
Atu0036 -1.0 -2.7 hypothetical protein compare
Atu1513 -1.0 -3.4 ABC excinuclease subunit A compare
Atu0434 -1.0 -2.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0971 -1.0 -2.7 two component sensor kinase compare
Atu2832 -1.0 -3.7 tRNA modification GTPase compare
Atu0784 -1.0 -2.6 hypothetical protein compare
Atu0361 -0.9 -1.6 transcriptional regulator compare
Atu2057 -0.9 -2.2 DNA helicase II compare
Atu0824 -0.9 -1.3 hypothetical protein compare
Atu1364 -0.9 -3.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3750 -0.9 -2.0 thiamine-phosphate pyrophosphorylase compare
Atu1219 -0.9 -1.0 hypothetical protein compare
Atu1739 -0.9 -2.4 permease compare
Atu1874 -0.8 -2.0 RecA protein compare
Atu2472 -0.8 -1.5 hypothetical protein compare
Atu2204 -0.8 -1.7 hypothetical protein compare
Atu2052 -0.8 -3.4 hypothetical protein compare
Atu4514 -0.8 -3.0 RpiR family transcriptional regulator compare
Atu1620 -0.8 -5.2 triosephosphate isomerase compare
Atu1028 -0.8 -1.8 hypothetical protein compare
Atu1845 -0.8 -3.2 phosphoribosylformylglycinamidine synthase I compare
Atu0269 -0.8 -2.6 exodeoxyribonuclease VII large subunit compare
Atu1904 -0.8 -1.9 transcriptional regulator compare
Atu1204 -0.8 -3.5 potassium uptake protein compare
Atu0025 -0.8 -1.7 hypothetical protein compare
Atu1446 -0.8 -1.4 two component response regulator compare
Atu2824 -0.8 -2.2 hypothetical protein compare
Atu1619 -0.8 -2.3 protein-export membrane protein SECG compare
Atu4176 -0.8 -2.4 hypothetical protein compare
Atu3721 -0.8 -1.3 hypothetical protein compare
Atu1141 -0.8 -3.0 Phosphoribosylglycinamide synthetase compare
Atu2684 -0.8 -1.1 hypothetical protein compare
Atu6114 -0.7 -1.5 hypothetical protein compare
Atu2270 -0.7 -1.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu0280 -0.7 -1.8 hypothetical protein compare
Atu2728 -0.7 -1.9 beta (1-->2) glucan export ATP-binding protein compare
Atu0149 -0.7 -1.4 enoyl-(acyl-carrier-protein) reductase compare
Atu3727 -0.7 -2.1 hypothetical protein compare
Atu0185 -0.7 -2.2 methylglyoxal synthase compare
Atu8190 -0.7 -2.7 hypothetical protein compare
Atu3461 -0.7 -1.1 GntR family transcriptional regulator compare
Atu2184 -0.7 -2.9 transcriptional regulator, AsnC family compare
Atu5057 -0.7 -1.7 hypothetical protein compare
Atu4773 -0.7 -1.0 two component response regulator compare
Atu2433 -0.7 -1.0 hypothetical protein compare
Atu3593 -0.7 -4.8 hypothetical protein compare
Atu2831 -0.7 -2.3 glucose inhibited division protein A compare
Atu2432 -0.7 -1.8 hypothetical protein compare
Atu2041 -0.7 -1.5 acetyltransferase compare
Atu3396 -0.7 -5.0 ABC transporter substrate-binding protein compare
Atu8138 -0.7 -1.1 hypothetical protein compare
Atu2650 -0.7 -4.6 glycerol-3-phosphate dehydrogenase compare
Atu2801 -0.7 -2.1 precorrin-2 C20 methyltransferase compare
Atu1542 -0.7 -3.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0050 -0.6 -2.6 two component response regulator compare
Atu5540 -0.6 -0.8 hypothetical protein compare
Atu2555 -0.6 -2.0 L-lysine 2,3-aminomutase compare
Atu2585 -0.6 -2.4 hypothetical protein compare
Atu4470 -0.6 -4.4 iron ABC transporter ATPase compare
Atu1470 -0.6 -1.0 Camphor resistance protein compare
Atu3798 -0.6 -2.7 TetR family transcriptional regulator compare
Atu0421 -0.6 -1.0 ABC transporter, membrane spanning protein compare
Atu3999 -0.6 -1.4 dithiobiotin synthetase compare
Atu2827 -0.6 -1.9 hypothetical protein compare
Atu0051 -0.6 -2.7 two component sensor kinase compare
Atu3032 -0.6 -2.5 hypothetical protein compare
Atu2073 -0.6 -2.7 membrane protein compare
Atu1685 -0.6 -0.8 hypothetical protein compare
Atu1714 -0.6 -1.1 exonuclease III compare
Atu3623 -0.6 -3.1 DnaJ family molecular chaperone compare
Atu1774 -0.6 -3.2 ABC transporter, substrate binding protein (peptide) compare
Atu2772 -0.6 -2.8 Invasion protein A compare
Atu3730 -0.6 -1.0 hypothetical protein compare
Atu4099 -0.6 -2.9 hypothetical protein compare
Atu3554 -0.6 -2.5 hypothetical protein compare
Atu1307 -0.6 -1.8 dihydroorotase compare
Atu2798 -0.6 -2.4 precorrin-6y methyltransferase compare
Atu4418 -0.6 -2.7 glutaryl-CoA dehydrogenase compare
Atu1803 -0.6 -2.0 cold shock protein compare
Atu0572 -0.6 -1.5 hypothetical protein compare
Atu1260 -0.6 -1.1 hypothetical protein compare
Atu3481 -0.6 -2.8 enoyl-CoA hydratase compare
Atu1760 -0.6 -0.9 hypothetical protein compare
Atu1031 -0.6 -2.1 hypothetical protein compare
Atu2442 -0.6 -0.9 hypothetical protein compare
Atu3505 -0.6 -3.6 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1099 -0.6 -1.9 hypothetical protein compare
Atu1163 -0.6 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2335 -0.6 -0.9 hypothetical protein compare
Atu4589 -0.5 -1.6 transmembrane transport protein compare
Atu1581 -0.5 -1.5 hypothetical protein compare
Atu0419 -0.5 -1.2 two component sensor kinase compare
Atu2796 -0.5 -2.3 precorrin-4 C11-methyltransferase compare
Atu2790 -0.5 -1.4 3-isopropylmalate dehydratase, small subunit compare
Atu2028 -0.5 -1.7 transcriptional regulator, ArsR family compare
Atu0190 -0.5 -3.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0658 -0.5 -3.5 phosphate permease compare
Atu4290 -0.5 -1.5 hypothetical protein compare
Atu2805 -0.5 -2.9 cobalamin synthesis protein compare
Atu4882 -0.5 -1.0 hypothetical protein compare
Atu3395 -0.5 -3.6 iron (III ABC transporter permease ABC transporter permease compare
Atu5430 -0.5 -1.0 hypothetical protein compare
Atu1980 -0.5 -0.8 hypothetical protein compare
Atu0876 -0.5 -1.2 superoxide dismutase compare
Atu2001 -0.5 -3.3 excinuclease ABC subunit B compare
Atu1683 -0.5 -1.1 hypothetical protein compare
Atu3018 -0.5 -2.4 hypothetical protein compare
Atu3740 -0.5 -3.0 fructose bisphosphate aldolase compare
Atu3755 -0.5 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2115 -0.5 -3.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu8165 -0.5 -1.5 hypothetical protein compare
Atu1449 -0.5 -2.5 potassium uptake protein compare
Atu3476 -0.5 -2.1 AsnC family transcriptional regulator compare
Atu2040 -0.5 -2.5 phosphoserine phosphatase compare
Atu2169 -0.5 -2.1 hypothetical protein compare
Atu3248 -0.5 -2.5 cell division inhibitor compare
Atu2436 -0.5 -1.9 hypothetical protein compare
Atu4468 -0.5 -2.8 iron transport ABC transporter permease compare
Atu2802 -0.5 -2.9 precorrin-8X methylmutase compare
Atu3394 -0.5 -2.5 iron ABC transporter ATPase compare
Atu0535 -0.5 -2.1 hypothetical protein compare
Atu2333 -0.5 -2.8 ATP-dependent RNA helicase compare
Atu2591 -0.5 -2.7 glucosyltransferase compare
Atu3912 -0.5 -2.7 hypothetical protein compare
Atu1491 -0.5 -2.5 sodium bile acid symporter family protein compare
Atu4148 -0.5 -2.4 UDP-glucuronic acid epimerase compare
Atu4873 -0.5 -2.5 TetR family transcriptional regulator compare
Atu1602 -0.5 -2.8 transcriptional activator, Crp family compare
Atu2682 -0.5 -1.1 hypothetical protein compare
Atu3707 -0.5 -1.5 phosphoserine aminotransferase compare
Atu0166 -0.5 -1.3 hypothetical protein compare
Atu0119 -0.5 -0.7 hypothetical protein compare
Atu4711 -0.5 -2.2 two component sensor kinase compare
Atu0922 -0.5 -1.0 hypothetical protein compare
Atu0029 -0.5 -2.4 S-adenosylhomocysteine hydrolase compare
Atu4469 -0.5 -2.0 iron ABC transporter permease compare
Atu1667 -0.5 -1.0 hypothetical protein compare
Atu3024 -0.5 -3.5 sugar ABC transporter permease compare
Atu0690 -0.5 -1.1 hypothetical protein compare
Atu1846 -0.5 -0.9 hypothetical protein compare
Atu0499 -0.5 -2.4 hypothetical protein compare
Atu2582 -0.5 -2.1 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0085 -0.4 -1.7 tRNA pseudouridine 55 synthase compare
Atu1040 -0.4 -2.1 MFS permease compare
Atu2077 -0.4 -1.3 DNA polymerase III, epsilon subunit compare
Atu4151 -0.4 -1.7 LysR family transcriptional regulator compare
Atu4616 -0.4 -1.0 dTDP-4-dehydrorhamnose reductase compare
Atu0790 -0.4 -2.0 hypothetical protein compare
Atu0109 -0.4 -1.5 transcriptional regulator, MarR family compare
Atu4149 -0.4 -3.5 UDP-glucose 6-dehydrogenase compare
Atu1844 -0.4 -1.5 Phosphoribosylformylglycinamidine synthetase compare
Atu3608 -0.4 -2.4 hypothetical protein compare
Atu4406 -0.4 -1.5 periplasmic nitrate reductase, ferredoxin-like protein compare
Atu2441 -0.4 -1.4 RNA methylase compare
Atu1359 -0.4 -0.5 dnaK deletion suppressor protein compare
Atu4875 -0.4 -2.4 hypothetical protein compare
Atu4234 -0.4 -2.4 amino acid ABC transporter permease compare
Atu3083 -0.4 -1.8 hypothetical protein compare
Atu1291 -0.4 -1.4 hypothetical protein compare
Atu8167 -0.4 -2.9 putative transmembrane protein compare
Atu8151 -0.4 -1.1 hypothetical protein compare
Atu1075 -0.4 -2.0 amidophosphoribosyltransferase compare
Atu3480 -0.4 -2.5 hydroxymethylglutaryl-CoA lyase compare
Atu3264 -0.4 -1.3 IclR family transcriptional regulator compare
Atu1756 -0.4 -2.3 hypothetical protein compare
Atu2809 -0.4 -2.6 cobalamin biosynthesis protein compare
Atu0073 -0.4 -2.3 recF-like protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in lb experiments