Experiment set12IT004 for Pseudomonas putida KT2440

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
PP_4890 -7.2 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -6.7 -11.1 Histidinol dehydrogenase compare
PP_1985 -6.5 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_1986 -6.4 -4.4 3-isopropylmalate dehydratase small subunit compare
PP_1231 -6.2 -6.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5097 -6.2 -14.5 homoserine O-acetyltransferase compare
PP_0787 -6.1 -6.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5098 -6.0 -9.3 methionine biosynthesis protein MetW compare
PP_1988 -5.9 -10.3 3-isopropylmalate dehydrogenase compare
PP_0289 -5.9 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4679 -5.8 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0164 -5.8 -7.9 conserved protein of unknown function compare
PP_0290 -5.7 -6.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3409 -5.6 -3.9 putative Cobalamin biosynthesis protein cobE compare
PP_2001 -5.6 -9.5 O-succinylhomoserine sulfhydrylase compare
PP_4909 -5.6 -9.3 phosphoserine phosphatase compare
PP_0293 -5.5 -3.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0417 -5.5 -19.4 Anthranilate synthase component 1 compare
PP_0967 -5.5 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0691 -5.3 -5.1 Glutamate 5-kinase compare
PP_2168 -5.3 -12.3 Transaldolase compare
PP_5015 -5.3 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3511 -5.2 -11.1 Branched-chain-amino-acid aminotransferase compare
PP_4678 -5.2 -13.5 Ketol-acid reductoisomerase compare
PP_1088 -5.2 -9.9 Argininosuccinate synthase compare
PP_1995 -5.1 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2327 -5.0 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0083 -5.0 -3.5 tryptophan synthase beta chain compare
PP_4680 -5.0 -13.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2371 -5.0 -9.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -5.0 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4724 -4.9 -7.3 Carbamoyl-phosphate synthase small chain compare
PP_4723 -4.8 -13.5 Carbamoyl-phosphate synthase large chain compare
PP_5185 -4.7 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0421 -4.7 -8.3 Anthranilate phosphoribosyltransferase compare
PP_0965 -4.6 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1025 -4.4 -11.0 2-isopropylmalate synthase compare
PP_5289 -4.4 -5.8 Acetylglutamate kinase compare
PP_0422 -4.3 -7.0 Indole-3-glycerol phosphate synthase compare
PP_2370 -4.3 -4.5 conserved protein of unknown function compare
PP_5095 -4.3 -2.9 pyrroline-5-carboxylate reductase compare
PP_2433 -4.3 -3.4 conserved protein of unknown function compare
PP_4799 -4.2 -2.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0082 -4.2 -5.0 tryptophan synthase alpha chain compare
PP_3505 -4.2 -3.5 conserved protein of unknown function compare
PP_0339 -4.2 -2.9 Pyruvate dehydrogenase E1 component compare
PP_3999 -4.0 -10.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1079 -4.0 -5.6 Ornithine carbamoyltransferase compare
PP_5155 -3.8 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -3.8 -2.6 Nitrogen regulation protein NR(I) compare
PP_0420 -3.8 -8.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5128 -3.7 -6.6 Dihydroxy-acid dehydratase compare
PP_0184 -3.7 -6.1 Argininosuccinate lyase compare
PP_0292 -3.6 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2334 -3.5 -6.4 2-methylisocitrate lyase compare
PP_5346 -3.4 -7.4 pyruvate carboxylase subunit B compare
PP_4943 -3.4 -3.3 putative Glycosyl transferase compare
PP_3484 -3.3 -5.4 Response regulator receiver protein compare
PP_4699 -3.2 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1216 -3.0 -3.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4993 -3.0 -2.1 Glutathione synthetase compare
PP_4829 -3.0 -3.0 putative precorrin-3B synthase compare
PP_4364 -2.8 -3.6 putative Anti-sigma F factor antagonist compare
PP_5508 -2.7 -1.8 conserved protein of unknown function compare
PP_3821 -2.6 -10.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1493 -2.5 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5347 -2.5 -9.7 pyruvate carboxylase subunit A compare
PP_1233 -2.4 -5.7 sulfurtransferase compare
PP_2337 -2.4 -2.8 aconitate isomerase compare
PP_1994 -2.3 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_5054 -2.3 -1.8 glutaredoxin 3 compare
PP_0291 -2.2 -2.1 conserved protein of unknown function compare
PP_1568 -2.1 -1.8 conserved protein of unknown function compare
PP_0406 -2.1 -5.6 Nucleotidyltransferase family protein compare
PP_4058 -2.1 -8.3 1,4-alpha-glucan branching enzyme compare
PP_4700 -2.0 -2.8 pantothenate synthetase compare
PP_0065 -2.0 -3.0 NAD-binding component of TrK potassium transporter compare
PP_2328 -2.0 -5.0 Phosphoadenosine phosphosulfate reductase compare
PP_2335 -2.0 -6.4 methylcitrate synthase compare
PP_4977 -2.0 -7.6 5,10-methylenetetrahydrofolate reductase compare
PP_2499 -2.0 -2.2 conserved protein of unknown function compare
PP_2402 -1.9 -2.6 putative Sensor histidine kinase compare
PP_1672 -1.9 -3.8 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2336 -1.9 -2.2 aconitate hydratase 1 compare
PP_4628 -1.9 -3.7 conserved protein of unknown function conserved
PP_1677 -1.9 -4.2 Adenosyl-cobyric acid synthase compare
PP_2302 -1.8 -4.9 DNA-binding, ATP-dependent protease compare
PP_2375 -1.8 -8.2 cobalamin-dependent methionine synthase compare
PP_1629 -1.8 -4.7 Protein RecA compare
PP_3248 -1.7 -1.7 Dyp-type peroxidase family protein compare
PP_2333 -1.7 -4.4 GntR family transcriptional regulator conserved
PP_4827 -1.7 -6.5 Precorrin-2 C(20)-methyltransferase compare
PP_2136 -1.7 -3.2 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2388 -1.7 -3.3 Transporter, LysE family compare
PP_4782 -1.6 -3.9 Phosphomethylpyrimidine kinase compare
PP_1554 -1.6 -4.2 conserved protein of unknown function compare
PP_1654 -1.6 -3.2 cysteine synthase B compare
PP_3507 -1.6 -7.9 Aerobic cobaltochelatase subunit CobN compare
PP_4940 -1.6 -4.7 Putative glycosyltransferase compare
PP_4826 -1.6 -3.5 Precorrin-3B C17-methyltransferase compare
PP_4340 -1.6 -2.7 response regulator for chemotactic signal transduction compare
PP_4902 -1.6 -2.4 Oligoribonuclease compare
PP_3903 -1.5 -1.7 conserved protein of unknown function compare
PP_3880 -1.5 -1.7 conserved exported protein of unknown function compare
PP_2378 -1.5 -2.2 Fe/S biogenesis protein NfuA compare
PP_5348 -1.5 -5.6 Transcriptional regulator, LysR family compare
PP_2087 -1.5 -2.6 CmpX protein compare
PP_5217 -1.5 -8.3 Polyphosphate kinase compare
PP_0833 -1.5 -1.0 queuine tRNA-ribosyltransferase compare
PP_1322 -1.4 -1.3 putative Lipoprotein compare
PP_4922 -1.4 -7.7 Phosphomethylpyrimidine synthase compare
PP_2414 -1.4 -1.2 conserved exported protein of unknown function compare
PP_1673 -1.4 -3.5 cobyrinate a,c-diamide synthase compare
PP_3649 -1.4 -3.0 Transcriptional regulator, GntR family compare
PP_1695 -1.4 -5.2 putative Sodium-solute symporter/sensory box histidine kinase/response regulator conserved
PP_2082 -1.4 -7.0 phosphoenolpyruvate synthetase compare
PP_2416 -1.4 -1.7 putative Iron ABC transporter, ATP-binding protein compare
PP_0401 -1.4 -2.3 Ribosomal RNA small subunit methyltransferase A compare
PP_4121 -1.3 -3.9 NADH-quinone oxidoreductase subunit C/D compare
PP_3551 -1.3 -1.8 DNA-binding response regulator, LuxR family compare
PP_4124 -1.3 -3.6 NADH-quinone oxidoreductase subunit G compare
PP_1733 -1.3 -2.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4917 -1.3 -3.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5303 -1.3 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1635 -1.3 -2.7 DNA-binding response regulator compare
PP_1355 -1.3 -9.1 Muropeptide permease AmpG compare
PP_4830 -1.3 -3.3 precorrin-6Y C(5,15)-methyltransferase compare
PP_0393 -1.3 -2.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5329 -1.3 -3.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1344 -1.3 -1.5 conserved protein of unknown function compare
PP_5104 -1.3 -4.2 thiazole synthase compare
PP_4338 -1.2 -4.6 Chemotaxis histidine kinase CheA compare
PP_0513 -1.2 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1681 -1.2 -6.0 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3286 -1.2 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2145 -1.2 -3.5 beta-N-acetylglucosaminidase compare
PP_5027 -1.2 -2.5 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_5717 -1.2 -1.5 conserved protein of unknown function compare
PP_4832 -1.2 -2.7 Precorrin-6x reductase compare
PP_2390 -1.2 -3.3 Transcriptional regulator, LysR family compare
PP_2568 -1.2 -1.2 Ring-cleaving dioxygenase compare
PP_4481 -1.2 -4.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5748 -1.2 -1.9 cytochrome c heme lyase subunit compare
PP_0434 -1.2 -6.7 Anhydro-N-acetylmuramic acid kinase compare
PP_1678 -1.2 -2.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_3048 -1.2 -2.1 conserved protein of unknown function compare
PP_4332 -1.2 -3.7 Chemotaxis protein CheW compare
PP_0435 -1.1 -6.9 Peptidase, M23/M37 family compare
PP_0630 -1.1 -1.0 DNA gyrase inhibitor YacG compare
PP_5090 -1.1 -1.8 putative cell division protein compare
PP_4392 -1.1 -3.7 chemotaxis protein methyltransferase compare
PP_0425 -1.1 -2.1 conserved protein of unknown function compare
PP_0735 -1.1 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_0405 -1.1 -7.3 conserved protein of unknown function compare
PP_5583 -1.1 -2.0 conserved protein of unknown function compare
PP_4296 -1.1 -1.0 conserved exported protein of unknown function compare
PP_0122 -1.1 -1.6 conserved exported protein of unknown function compare
PP_4895 -1.1 -1.0 tRNA dimethylallyltransferase compare
PP_5654 -1.1 -1.6 putative phosphotriesterase compare
PP_1589 -1.0 -4.7 uridylyltransferase compare
PP_3603 -1.0 -4.0 Transcriptional regulator, GntR family compare
PP_1022 -1.0 -2.5 glucose 6-phosphate-1-dehydrogenase compare
PP_0119 -1.0 -2.4 putative zinc uptake regulation protein ZUR compare
PP_1783 -1.0 -0.7 dTDP-glucose pyrophosphorylase compare
PP_4999 -1.0 -1.1 dihydroorotase-like protein compare
PP_2000 -1.0 -1.3 amidophosphoribosyl transferase compare
PP_1675 -1.0 -4.1 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4695 -1.0 -4.5 Sensory box histidine kinase compare
PP_5473 -1.0 -2.3 putative transcriptional regulator, LuxR family compare
PP_1779 -1.0 -4.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4984 -1.0 -5.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1734 -1.0 -1.6 Probable septum site-determining protein MinC compare
PP_1217 -1.0 -2.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_t11 -1.0 -2.6 tRNA-Lys compare
PP_4575 -1.0 -3.3 Urea amidolyase-related protein compare
PP_2847 -1.0 -1.9 Urease accessory protein UreJ compare
PP_1676 -1.0 -3.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1553 -1.0 -1.4 conserved protein of unknown function compare
PP_4880 -0.9 -5.1 exoribonuclease R compare
PP_1304 -0.9 -4.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5216 -0.9 -1.6 exopolyphosphatase compare
PP_1778 -0.9 -2.6 Lipopolysaccharide ABC export system, permease protein compare
PP_4471 -0.9 -2.4 Magnesium transporter compare
PP_4482 -0.9 -2.1 Transcriptional regulator, AraC family compare
PP_0362 -0.9 -5.5 Biotin synthase compare
PP_1198 -0.9 -1.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1805 -0.9 -7.6 Polysaccharide biosynthesis protein compare
PP_1776 -0.9 -6.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_2324 -0.9 -3.5 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1804 -0.9 -5.1 Glycosyl transferase WbpL compare
PP_4122 -0.9 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0241 -0.9 -2.6 Transporter compare
PP_0368 -0.9 -4.0 putative Acyl-CoA dehydrogenase compare
PP_3434 -0.9 -1.1 conserved protein of unknown function compare
PP_1764 -0.9 -2.0 Phosphoglycolate phosphatase 2 compare
PP_3808 -0.8 -1.3 Antibiotic synthesis protein MbtH compare
PP_1214 -0.8 -1.7 putative transcriptional regulatory protein compare
PP_4480 -0.8 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_0893 -0.8 -1.6 ThiJ/PfpI family protein compare
PP_4701 -0.8 -0.9 glucose-6-phosphate isomerase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium propionate in Pseudomonas putida KT2440

For carbon source Sodium propionate across organisms