Experiment set12IT004 for Pseudomonas putida KT2440

Compare to:

Sodium propionate carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_5145 +5.3 45.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1650 +3.0 27.9 Sensor protein GacS compare
PP_4099 +3.0 28.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0948 +3.0 15.2 Phosphocarrier protein HPr compare
PP_2216 +2.7 5.2 short-chain acyl-CoA dehydrogenase compare
PP_1898 +2.2 8.2 MotA/TolQ/ExbB proton channel family protein compare
PP_4994 +1.8 7.5 conserved protein of unknown function compare
PP_4171 +1.7 11.1 conserved exported protein of unknown function compare
PP_2210 +1.6 3.6 LysR family transcriptional regulator compare
PP_1623 +1.6 6.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_4561 +1.5 2.1 stress response protein compare
PP_2889 +1.3 4.8 putative Transmembrane regulator PrtR compare
PP_1176 +1.2 2.0 conserved protein of unknown function compare
PP_5225 +1.1 1.9 frataxin compare
PP_0276 +1.0 1.8 Transcriptional regulator, Cro/CI family compare
PP_4373 +1.0 6.9 Transcriptional regulator FleQ compare
PP_2387 +0.9 3.7 conserved protein of unknown function compare
PP_0803 +0.9 6.3 Protein secretion ABC efflux system, membrane fusion protein compare
PP_2633 +0.9 2.5 conserved protein of unknown function compare
PP_0805 +0.9 7.0 Outer membrane efflux protein compare
PP_0574 +0.9 7.1 DNA-binding response regulator, LuxR family compare
PP_5053 +0.9 3.9 Protein-export protein SecB compare
PP_5093 +0.9 1.9 twitching motility protein compare
PP_0806 +0.9 8.1 putative Surface adhesion protein compare
PP_2765 +0.9 1.1 putative Sulfonate monooxygenase MsuD compare
PP_0804 +0.8 4.8 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_3481 +0.8 1.4 conserved exported protein of unknown function compare
PP_0048 +0.8 1.8 conserved protein of unknown function compare
PP_0354 +0.8 6.6 CBS domain protein compare
PP_5441 +0.8 2.6 protein of unknown function compare
PP_0848 +0.8 1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1325 +0.8 3.6 putative lipoprotein compare
PP_4517 +0.8 1.2 conserved protein of unknown function compare
PP_0232 +0.8 1.3 ATP-binding taurine transporter subunit compare
PP_2060 +0.8 2.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1208 +0.8 1.1 conserved protein of unknown function, SlyX family compare
PP_0719 +0.8 0.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0960 +0.8 3.0 phospholipid ABC transporter binding protein compare
PP_0961 +0.8 3.9 toluene tolerance protein compare
PP_4254 +0.8 2.4 conserved protein of unknown function compare
PP_0353 +0.8 4.7 Exonuclease compare
PP_2319 +0.7 4.3 conserved protein of unknown function compare
PP_1215 +0.7 0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_4961 +0.7 0.8 putative Lipoprotein compare
PP_4989 +0.7 2.9 Protein PilJ compare
PP_5604 +0.7 0.9 putative subtilisin-like serine protease compare
PP_4156 +0.7 1.9 Transcriptional regulator, LysR family compare
PP_3831 +0.7 2.5 conserved protein of unknown function compare
PP_5167 +0.7 3.1 conserved hypothetical protein compare
PP_1808 +0.7 2.4 glucose-6-phosphate isomerase compare
PP_0801 +0.7 1.4 conserved exported protein of unknown function compare
PP_4532 +0.7 1.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3938 +0.7 1.5 conserved protein of unknown function compare
PP_2103 +0.7 3.5 conserved protein of unknown function compare
PP_3098 +0.7 1.4 conserved protein of unknown function compare
PP_3258 +0.7 2.6 conserved protein of unknown function compare
PP_3245 +0.7 1.9 conserved protein of unknown function compare
PP_0001 +0.7 1.4 probable chromosome-partitioning protein compare
PP_3971 +0.7 1.7 conserved protein of unknown function compare
PP_1307 +0.7 2.6 AsnC family transcriptional regulator compare
PP_5309 +0.7 0.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0355 +0.7 2.0 Response regulator compare
PP_4328 +0.7 2.5 conserved protein of unknown function compare
PP_4329 +0.6 1.5 FlhB domain protein compare
PP_2274 +0.6 2.6 conserved protein of unknown function compare
PP_2496 +0.6 2.7 conserved protein of unknown function compare
PP_3597 +0.6 1.9 L-lysine and D-lysine ABC transporter, ATPase component (from data) compare
PP_2030 +0.6 1.9 conserved protein of unknown function compare
PP_5066 +0.6 2.8 K(+)/H(+) antiporter NhaP2 compare
PP_1656 +0.6 4.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_0634 +0.6 2.4 Fimbrial protein compare
PP_1113 +0.6 4.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4419 +0.6 1.6 transposase compare
PP_5241 +0.6 0.9 DNA-binding response regulator, LuxR family compare
PP_2581 +0.6 1.2 conserved protein of unknown function compare
PP_5483 +0.6 1.2 conserved protein of unknown function compare
PP_t29 +0.6 1.1 tRNA-Ala compare
PP_4997 +0.6 1.3 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2403 +0.6 1.6 Chemotaxis protein CheY compare
PP_3447 +0.6 1.2 conserved membrane protein of unknown function compare
PP_3761 +0.6 4.7 Sensor histidine kinase/response regulator compare
PP_5045 +0.6 1.8 tRNA sulfurtransferase compare
PP_3532 +0.6 1.7 Transcriptional regulator, AsnC family compare
PP_0643 +0.6 1.7 protein of unknown function compare
PP_4629 +0.6 2.7 Sensory box protein compare
PP_2422 +0.6 2.5 conserved protein of unknown function compare
PP_5248 +0.6 1.0 putative hydrolase compare
PP_1528 +0.6 0.6 conserved protein of unknown function compare
PP_1237 +0.6 0.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0939 +0.6 2.0 Carbon-nitrogen hydrolase family protein compare
PP_1845 +0.6 1.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_3519 +0.6 1.0 putative Lipoprotein compare
PP_2575 +0.6 1.3 conserved exported protein of unknown function compare
PP_5519 +0.6 1.7 conserved protein of unknown function of phage origin compare
PP_1225 +0.5 1.6 7-carboxy-7-deazaguanine synthase compare
PP_2041 +0.5 2.7 Transcriptional regulator, LysR family compare
PP_4173 +0.5 3.6 Sensor histidine kinase/response regulator compare
PP_0508 +0.5 1.5 conserved exported protein of unknown function compare
PP_5489 +0.5 1.5 conserved protein of unknown function compare
PP_1381 +0.5 0.9 4-carboxymuconolactone decarboxylase compare
PP_0335 +0.5 2.5 Glutathione S-transferase family protein compare
PP_1736 +0.5 1.0 conserved protein of unknown function compare
PP_4959 +0.5 3.4 diguanylate cyclase compare
PP_2820 +0.5 0.7 HTH-type transcriptional regulator nfxB compare
PP_3110 +0.5 1.7 protein of unknown function compare
PP_3899 +0.5 1.6 conserved protein of unknown function, hicB family compare
PP_3707 +0.5 2.1 conserved protein of unknown function compare
PP_4720 +0.5 1.6 putative RNA binding protein compare
PP_2028 +0.5 1.5 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_3034 +0.5 1.3 putative Regulator protein compare
PP_5221 +0.5 2.1 conserved protein of unknown function, UPF0178 family compare
PP_3392 +0.5 1.2 conserved protein of unknown function compare
PP_1362 +0.5 1.8 pyruvate kinase II compare
PP_0711 +0.5 1.2 putative hydrolase compare
PP_4669 +0.5 1.0 OmpA family protein compare
PP_4354 +0.5 2.2 flagellar export apparatus subunit compare
PP_2179 +0.5 2.9 glutamine amidotransferase compare
PP_0440 +0.5 1.1 Elongation factor Tu-A compare
PP_4151 +0.5 2.4 Excisionase domain protein compare
PP_1926 +0.5 1.7 putative phosphotyrosine-protein phosphatase compare
PP_3243 +0.5 1.1 Acetyltransferase, GNAT family compare
PP_1864 +0.5 1.5 conserved protein of unknown function compare
PP_2413 +0.5 3.4 GGDEF family protein compare
PP_0905 +0.5 1.1 conserved exported protein of unknown function compare
PP_5393 +0.5 0.8 putative metal-binding chaperone compare
PP_1655 +0.5 2.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4054 +0.5 1.6 conserved protein of unknown function compare
PP_3052 +0.5 0.9 conserved protein of unknown function compare
PP_3307 +0.5 1.4 conserved protein of unknown function compare
PP_3344 +0.5 2.1 nickel ABC transporter permease subunit compare
PP_4846 +0.5 1.6 L-amino acid N-acyltransferase compare
PP_3094 +0.5 1.6 conserved exported protein of unknown function compare
PP_2655 +0.5 1.7 conserved protein of unknown function compare
PP_2947 +0.5 1.5 putative Transcriptional regulator MvaT, P16 subunit compare
PP_5156 +0.5 1.6 conserved exported protein of unknown function compare
PP_1548 +0.5 2.0 conserved protein of unknown function compare
PP_0262 +0.5 2.2 conserved protein of unknown function compare
PP_1404 +0.5 1.5 conserved protein of unknown function compare
PP_4694 +0.5 3.1 Glutamyl-Q tRNA(Asp) synthetase compare
PP_0202 +0.5 1.7 CBS domain-containing protein compare
PP_5146 +0.5 2.1 RNA pyrophosphohydrolase compare
PP_5174 +0.5 2.4 Efflux membrane fusion protein, RND family compare
PP_4050 +0.5 3.6 glycogen synthase compare
PP_4301 +0.5 1.9 Pyruvate kinase compare
PP_0407 +0.5 2.5 DnaJ-like protein DjlA compare
PP_4975 +0.5 1.9 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_3197 +0.5 1.9 Glyoxalase family protein compare
PP_1264 +0.5 3.1 putative Fusaric acid resistance protein compare
PP_2137 +0.5 0.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_1774 +0.5 1.5 conserved exported protein of unknown function compare
PP_2446 +0.4 1.5 conserved exported protein of unknown function compare
PP_1109 +0.4 3.4 Transcriptional regulator, GntR family compare
PP_1068 +0.4 1.4 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_4253 +0.4 0.9 cytochrome c oxidase subunit, cbb3-type compare
PP_0238 +0.4 1.7 alkanesulfonate monooxygenase compare
PP_2864 +0.4 1.5 conserved protein of unknown function compare
PP_2715 +0.4 1.6 ArsH protein compare
PP_1697 +0.4 0.9 transcriptional regulator, GntR family compare
PP_4172 +0.4 2.1 conserved exported protein of unknown function compare
PP_0891 +0.4 2.1 conserved exported protein of unknown function compare
PP_0549 +0.4 2.0 putative Lipoprotein compare
PP_3075 +0.4 1.7 putative transcriptional regulator compare
PP_0616 +0.4 1.6 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_3744 +0.4 1.8 transcriptional dual regulator GlcC-Glycolate compare
PP_2152 +0.4 0.9 glycerophosphoryl diester phosphodiesterase compare
PP_0563 +0.4 3.2 Response regulator compare
PP_4849 +0.4 2.3 putative DnaK protein compare
PP_0185 +0.4 3.0 Positive alginate biosynthesis regulatory protein compare
PP_5701 +0.4 0.4 conserved protein of unknown function compare
PP_4974 +0.4 2.1 NhaP-type Na+/H+ and K+/H+ antiporters compare
PP_3190 +0.4 1.5 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_4223 +0.4 0.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1564 +0.4 2.2 conserved exported protein of unknown function compare
PP_2836 +0.4 2.1 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_4262 +0.4 1.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4751 +0.4 1.8 Amino acid ABC transporter, ATP-binding protein compare
PP_1822 +0.4 2.0 conserved protein of unknown function compare
PP_1633 +0.4 1.2 conserved exported protein of unknown function compare
PP_4760 +0.4 1.1 Alcohol dehydrogenase, zinc-containing compare
PP_3571 +0.4 1.7 putative Acetylornithine deacetylase compare
PP_4100 +0.4 2.6 Transcriptional regulator, Cro/CI family compare
PP_3757 +0.4 1.6 Chemotaxis protein CheY compare
PP_5549 +0.4 1.8 conserved protein of unknown function compare
PP_1938 +0.4 0.9 conserved protein of unknown function compare
PP_3509 +0.4 1.4 Glyoxalase family protein compare
PP_0640 +0.4 1.2 conserved protein of unknown function compare
PP_1266 +0.4 2.1 putative Fusaric acid resistance protein compare
PP_0770 +0.4 1.4 PemI-like protein compare
PP_1628 +0.4 1.2 NMN amidohydrolase compare
PP_0327 +0.4 2.4 formyltetrahydrofolate deformylase compare
PP_3205 +0.4 1.1 Fumarylacetoacetate hydrolase family protein compare
PP_1739 +0.4 1.2 conserved membrane protein of unknown function compare
PP_1979 +0.4 1.3 putative Hydrolase compare
PP_3824 +0.4 0.9 conserved exported protein of unknown function compare
PP_2318 +0.4 2.1 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_0306 +0.4 1.4 conserved protein of unknown function compare
PP_0685 +0.4 1.2 conserved protein of unknown function compare
PP_4682 +0.4 1.6 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_2313 +0.4 1.3 conserved membrane protein of unknown function compare
PP_2070 +0.4 1.1 Transcriptional regulator, AraC family compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium propionate in Pseudomonas putida KT2440

For carbon source Sodium propionate across organisms