Experiment set12IT002 for Pseudomonas putida KT2440

Compare to:

1,2-Propanediol carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -7.3 -7.2 3-isopropylmalate dehydratase large subunit compare
PP_4890 -7.1 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5097 -7.1 -12.8 homoserine O-acetyltransferase compare
PP_5098 -6.9 -8.2 methionine biosynthesis protein MetW compare
PP_1986 -6.7 -4.7 3-isopropylmalate dehydratase small subunit compare
PP_4678 -6.7 -16.2 Ketol-acid reductoisomerase compare
PP_5014 -6.7 -4.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_1988 -6.5 -11.7 3-isopropylmalate dehydrogenase compare
PP_0967 -6.5 -13.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2001 -6.4 -13.0 O-succinylhomoserine sulfhydrylase compare
PP_0966 -6.3 -14.1 Histidinol dehydrogenase compare
PP_0293 -5.9 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0417 -5.9 -21.5 Anthranilate synthase component 1 compare
PP_1995 -5.9 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -5.9 -9.8 Branched-chain-amino-acid aminotransferase compare
PP_4723 -5.8 -10.5 Carbamoyl-phosphate synthase large chain compare
PP_4724 -5.8 -6.9 Carbamoyl-phosphate synthase small chain compare
PP_1079 -5.8 -7.6 Ornithine carbamoyltransferase compare
PP_0422 -5.7 -5.9 Indole-3-glycerol phosphate synthase compare
PP_0083 -5.4 -3.8 tryptophan synthase beta chain compare
PP_0164 -5.4 -10.9 conserved protein of unknown function compare
PP_4680 -5.2 -15.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -5.2 -8.1 Anthranilate phosphoribosyltransferase compare
PP_4364 -5.2 -4.8 putative Anti-sigma F factor antagonist compare
PP_5128 -5.2 -9.2 Dihydroxy-acid dehydratase compare
PP_0082 -5.1 -3.5 tryptophan synthase alpha chain compare
PP_5155 -5.1 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0184 -5.1 -3.5 Argininosuccinate lyase compare
PP_0965 -5.0 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2168 -5.0 -13.8 Transaldolase compare
PP_1088 -5.0 -12.5 Argininosuccinate synthase compare
PP_4679 -4.9 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -4.9 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -4.8 -10.8 phosphoserine phosphatase compare
PP_5185 -4.8 -8.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5095 -4.7 -3.2 pyrroline-5-carboxylate reductase compare
PP_5347 -4.6 -14.1 pyruvate carboxylase subunit A compare
PP_4799 -4.6 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5346 -4.6 -10.4 pyruvate carboxylase subunit B compare
PP_4999 -4.6 -3.2 dihydroorotase-like protein compare
PP_4943 -4.5 -3.1 putative Glycosyl transferase compare
PP_5348 -4.5 -11.2 Transcriptional regulator, LysR family compare
PP_0339 -4.5 -4.3 Pyruvate dehydrogenase E1 component compare
PP_5289 -4.3 -5.9 Acetylglutamate kinase compare
PP_3999 -4.3 -10.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0292 -4.2 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2388 -4.2 -5.3 Transporter, LysE family compare
PP_4736 -4.2 -11.0 L-lactate dehydrogenase compare
PP_0691 -4.1 -5.2 Glutamate 5-kinase compare
PP_5015 -3.9 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0420 -3.9 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4696 -3.8 -4.5 Nitrogen regulation protein NR(I) compare
PP_0289 -3.8 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4735 -3.7 -8.8 L-lactate permease compare
PP_2371 -3.7 -7.8 Sulphite reductase hemoprotein, beta subunit compare
PP_2327 -3.4 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1231 -3.4 -7.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -3.4 -3.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1654 -3.1 -4.3 cysteine synthase B compare
PP_4700 -3.1 -2.1 pantothenate synthetase compare
PP_4004 -3.0 -4.9 DNA translocase FtsK compare
PP_5104 -2.9 -6.1 thiazole synthase compare
PP_0362 -2.8 -9.4 Biotin synthase compare
PP_1233 -2.8 -5.7 sulfurtransferase compare
PP_2390 -2.7 -9.4 Transcriptional regulator, LysR family compare
PP_4829 -2.7 -4.1 putative precorrin-3B synthase compare
PP_2370 -2.7 -5.0 conserved protein of unknown function compare
PP_5217 -2.7 -13.0 Polyphosphate kinase compare
PP_1025 -2.6 -6.9 2-isopropylmalate synthase compare
PP_4782 -2.6 -5.9 Phosphomethylpyrimidine kinase compare
PP_1733 -2.6 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_3484 -2.6 -6.9 Response regulator receiver protein compare
PP_2433 -2.5 -3.2 conserved protein of unknown function compare
PP_0363 -2.5 -9.2 8-amino-7-oxononanoate synthase compare
PP_2414 -2.4 -1.5 conserved exported protein of unknown function compare
PP_4994 -2.4 -5.0 conserved protein of unknown function compare
PP_4922 -2.3 -10.8 Phosphomethylpyrimidine synthase compare
PP_0356 -2.3 -7.9 malate synthase G compare
PP_1898 -2.3 -4.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0393 -2.2 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4984 -2.2 -9.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0365 -2.1 -9.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2000 -2.1 -1.4 amidophosphoribosyl transferase compare
PP_3821 -2.1 -7.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1598 -2.1 -5.8 regulatory intramembrane protein RIP zinc protease compare
PP_0888 -2.1 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_0364 -2.0 -7.7 pimeloyl-[acp] methyl ester esterase compare
PP_0291 -1.9 -1.7 conserved protein of unknown function compare
PP_0366 -1.9 -5.4 dethiobiotin synthetase compare
PP_3248 -1.9 -2.1 Dyp-type peroxidase family protein compare
PP_1348 -1.8 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5303 -1.8 -4.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1629 -1.8 -5.3 Protein RecA compare
PP_5216 -1.7 -2.2 exopolyphosphatase compare
PP_0959 -1.7 -1.7 phospholipid ABC transporter compare
PP_3662 -1.7 -8.7 conserved protein of unknown function compare
PP_0406 -1.7 -6.2 Nucleotidyltransferase family protein compare
PP_1045 -1.7 -2.9 Type II secretion pathway protein XcpP compare
PP_1734 -1.7 -2.5 Probable septum site-determining protein MinC compare
PP_2682 -1.7 -5.5 Fe-containing alcohol dehydrogenase compare
PP_1269 -1.6 -1.9 Universal stress protein family compare
PP_4910 -1.6 -1.8 conserved protein of unknown function compare
PP_1232 -1.6 -6.6 conserved exported protein of unknown function compare
PP_2336 -1.6 -3.4 aconitate hydratase 1 compare
PP_0435 -1.6 -10.7 Peptidase, M23/M37 family compare
PP_1468 -1.6 -1.5 Tyrosine recombinase XerD compare
PP_0612 -1.5 -7.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_2665 -1.5 -4.6 Glycerol metabolism activator compare
PP_1783 -1.5 -1.0 dTDP-glucose pyrophosphorylase compare
PP_0960 -1.5 -3.6 phospholipid ABC transporter binding protein compare
PP_4726 -1.4 -1.9 Chaperone protein DnaJ compare
PP_0961 -1.4 -5.1 toluene tolerance protein compare
PP_4737 -1.4 -6.8 D-lactate dehydrogenase compare
PP_1675 -1.4 -6.5 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_1427 -1.3 -6.8 RNA polymerase sigma E factor compare
PP_2328 -1.3 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_0735 -1.3 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_0989 -1.3 -2.7 glycine cleavage system H protein 1 compare
PP_2337 -1.3 -2.5 aconitate isomerase compare
PP_1568 -1.3 -1.5 conserved protein of unknown function compare
PP_1493 -1.3 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2683 -1.3 -5.6 putative sensory box histidine kinase/response regulator compare
PP_2163 -1.3 -5.9 VacJ lipoprotein compare
PP_2087 -1.3 -2.7 CmpX protein compare
PP_5310 -1.2 -4.2 junction-specific ATP-dependent DNA helicase compare
PP_4828 -1.2 -1.2 Precorrin-8X methylmutase compare
PP_0381 -1.2 -6.4 Coenzyme PQQ synthesis protein F compare
PP_3507 -1.2 -7.5 Aerobic cobaltochelatase subunit CobN compare
PP_0914 -1.2 -6.6 GGDEF domain protein compare
PP_1216 -1.2 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2475 -1.2 -2.6 Transcriptional regulator, TetR family compare
PP_5230 -1.2 -2.6 Tyrosine recombinase XerC compare
PP_1677 -1.2 -4.6 Adenosyl-cobyric acid synthase compare
PP_2820 -1.2 -2.5 HTH-type transcriptional regulator nfxB compare
PP_4977 -1.1 -6.3 5,10-methylenetetrahydrofolate reductase compare
PP_4826 -1.1 -4.1 Precorrin-3B C17-methyltransferase compare
PP_1217 -1.1 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4787 -1.1 -2.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2675 -1.1 -3.1 Cytochrome c-type protein compare
PP_1426 -1.1 -7.5 L-aspartate oxidase compare
PP_1664 -1.1 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_0986 -1.1 -2.7 aminomethyltransferase compare
PP_2028 -1.1 -2.3 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2137 -1.1 -1.1 beta-ketoadipyl CoA thiolase, beta component compare
PP_3726 -1.1 -2.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_0962 -1.1 -1.8 toluene-tolerance protein compare
PP_2299 -1.1 -2.3 Trigger factor compare
PP_0378 -1.1 -5.6 Pyrroloquinoline-quinone synthase compare
PP_1672 -1.0 -3.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0376 -1.0 -6.0 Coenzyme PQQ synthesis protein E compare
PP_1076 -1.0 -1.8 aquaglyceroporin compare
PP_2136 -1.0 -2.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4827 -1.0 -5.7 Precorrin-2 C(20)-methyltransferase compare
PP_1679 -1.0 -3.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1681 -1.0 -5.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_2669 -1.0 -4.1 putative Outer membrane protein compare
PP_1301 -1.0 -4.7 quality control serine endoprotease DegS compare
PP_4695 -1.0 -5.2 Sensory box histidine kinase compare
PP_2671 -1.0 -5.4 Sensor histidine kinase compare
PP_1999 -1.0 -2.4 membrane protein required for colicin V production compare
PP_0958 -1.0 -3.0 phospholipid ABC transporter ATP-binding subunit compare
PP_4268 -1.0 -1.1 nucleoid-associated broad specificity regulator compare
PP_2302 -1.0 -3.5 DNA-binding, ATP-dependent protease compare
PP_4133 -1.0 -2.0 Transcriptional regulator-related protein compare
PP_4880 -1.0 -5.1 exoribonuclease R compare
PP_4699 -1.0 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0122 -1.0 -1.8 conserved exported protein of unknown function compare
PP_2375 -1.0 -7.0 cobalamin-dependent methionine synthase compare
PP_1355 -0.9 -7.9 Muropeptide permease AmpG compare
PP_1912 -0.9 -2.5 Phosphate acyltransferase compare
PP_4470 -0.9 -3.3 putative transcriptional regulator (Arc domain-containing) compare
PP_2680 -0.9 -2.5 aldehyde dehydrogenase compare
PP_4902 -0.9 -1.5 Oligoribonuclease compare
PP_4121 -0.9 -3.4 NADH-quinone oxidoreductase subunit C/D compare
PP_5717 -0.9 -1.7 conserved protein of unknown function compare
PP_1309 -0.9 -3.5 conserved exported protein of unknown function compare
PP_1353 -0.9 -0.8 conserved membrane protein of unknown function compare
PP_4895 -0.9 -1.5 tRNA dimethylallyltransferase compare
PP_4942 -0.9 -1.4 conserved protein of unknown function compare
PP_2672 -0.9 -3.7 Transcriptional activator protein ExaE compare
PP_5594 -0.9 -1.5 conserved protein of unknown function compare
PP_1678 -0.9 -2.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2568 -0.8 -1.1 Ring-cleaving dioxygenase compare
PP_1381 -0.8 -1.1 4-carboxymuconolactone decarboxylase compare
PP_t10 -0.8 -1.8 tRNA-Pro compare
PP_4480 -0.8 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_2793 -0.8 -1.1 Acyl-CoA dehydrogenase family protein compare
PP_4340 -0.8 -2.9 response regulator for chemotactic signal transduction compare
PP_4988 -0.8 -3.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0379 -0.8 -3.1 Coenzyme PQQ synthesis protein B compare
PP_3508 -0.8 -2.6 Protein CobW compare
PP_4129 -0.8 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3365 -0.8 -1.3 Acetolactate synthase compare
PP_0218 -0.8 -4.6 Sensory box protein compare
PP_0997 -0.8 -4.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_0792 -0.8 -4.6 catabolite repressor-activator, DNA-binding transcriptional dual regulator compare
PP_0405 -0.8 -6.1 conserved protein of unknown function compare
PP_4338 -0.8 -3.9 Chemotaxis histidine kinase CheA compare
PP_5274 -0.8 -2.0 conserved protein of unknown function compare
PP_2864 -0.8 -2.1 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 1,2-Propanediol in Pseudomonas putida KT2440

For carbon source 1,2-Propanediol across organisms