Experiment set11S552 for Escherichia coli BL21

Compare to:

no stress control

200 most important genes:

  gene name fitness t score description  
ECD_02399 -3.0 -2.1 GMP synthetase (glutamine aminotransferase) compare
ECD_03797 -2.8 -7.6 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_03687 -2.2 -1.7 site-specific tyrosine recombinase compare
ECD_02738 -2.2 -2.8 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_02507 -1.9 -1.7 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_01250 -1.8 -2.9 DNA topoisomerase I, omega subunit compare
ECD_03037 -1.8 -3.7 ribosome maturation factor for 30S subunits compare
ECD_03067 -1.8 -1.7 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_03746 -1.7 -5.8 periplasmic protein disulfide isomerase I compare
ECD_00634 -1.7 -2.3 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_03590 -1.7 -2.0 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_00054 -1.6 -2.8 protein associated with Co2+ and Mg2+ efflux compare
ECD_01162 -1.6 -2.7 fatty acid metabolism regulon transcriptional regulator compare
ECD_02549 -1.5 -7.8 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_01167 -1.4 -1.7 murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A compare
ECD_02202 -1.3 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_01826 -1.3 -1.4 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_00993 -1.2 -1.4 cold shock gene compare
ECD_03119 -1.2 -1.5 global DNA-binding transcriptional dual regulator compare
ECD_02726 -1.2 -3.5 site-specific tyrosine recombinase compare
ECD_01691 -1.1 -2.7 acid-inducible putative outer membrane protein compare
ECD_00933 -1.1 -2.8 outer membrane porin 1a (Ia compare
ECD_01897 -1.1 -3.7 ssuEADCB/tauABCD operon transcriptional activator compare
ECD_03610 -1.1 -3.2 phosphate ABC transporter permease compare
ECD_00442 -1.1 -1.3 iron export ABC transporter permease; peroxide resistance protein compare
ECD_02765 -1.1 -3.1 transketolase 1, thiamine triphosphate-binding compare
ECD_00380 -1.1 -1.4 cytochrome o ubiquinol oxidase subunit IV compare
ECD_04093 -1.1 -2.8 GGCT-like protein compare
ECD_00407 -1.0 -1.8 DUF1428 family protein compare
ECD_01664 -1.0 -1.1 putative acyl-CoA dehydrogenase compare
ECD_00899 -1.0 -2.9 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_02209 -1.0 -2.9 NADH:ubiquinone oxidoreductase, chain F compare
ECD_02775 -1.0 -6.5 DNA-specific endonuclease I compare
ECD_02463 -1.0 -3.4 back-translocating elongation factor EF4, GTPase compare
ECD_01863 -1.0 -1.4 flagellar class II regulon transcriptional activator, with FlhC compare
ECD_02857 -1.0 -1.0 hypothetical protein compare
ECD_03625 -0.9 -2.8 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_03671 -0.9 -1.6 TDP-Fuc4NAc:lipidIIFuc4NAc transferase compare
ECD_02104 -0.9 -1.8 lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase compare
ECD_03075 -0.9 -3.2 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_t00083 -0.9 -1.5 tRNA-Leu compare
ECD_03121 -0.9 -1.0 putative membrane protein compare
ECD_01979 -0.9 -2.1 multidrug efflux system, subunit A compare
ECD_02163 -0.9 -2.3 acid-inducible Kdo/WaaP family putative kinase compare
ECD_01240 -0.8 -2.7 PHP domain protein compare
ECD_04070 -0.8 -1.6 50S ribosomal subunit protein L9 compare
ECD_00322 -0.8 -1.2 putative transcriptional regulator compare
ECD_03031 -0.8 -3.8 polynucleotide phosphorylase/polyadenylase compare
ECD_03611 -0.8 -3.3 phosphate ABC transporter permease compare
ECD_01879 -0.8 -1.1 response regulator in two-component regulatory system with BarA compare
ECD_00326 -0.8 -1.1 DUF2755 family inner membrane protein compare
ECD_03046 -0.8 -3.6 transcript cleavage factor compare
ECD_01198 -0.8 -1.3 putative invasin compare
ECD_03612 -0.8 -5.6 phosphate ABC transporter periplasmic binding protein compare
ECD_03488 -0.8 -2.1 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_03997 -0.8 -1.9 putative 4Fe-4S mono-cluster protein compare
ECD_01481 -0.7 -2.7 glutaminase 2 compare
ECD_02212 -0.7 -3.7 NADH:ubiquinone oxidoreductase, chain B compare
ECD_02207 -0.7 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_02057 -0.7 -1.6 putative membrane protein compare
ECD_03756 -0.7 -4.8 GTP-binding protein compare
ECD_03801 -0.7 -4.5 6-phosphofructokinase I compare
ECD_01650 -0.7 -2.5 component of SufBCD Fe-S cluster assembly scaffold compare
ECD_00870 -0.7 -1.4 lipoprotein compare
ECD_03489 -0.7 -3.9 lipopolysaccharide core biosynthesis protein compare
ECD_00681 -0.7 -1.1 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01498 -0.7 -1.4 NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase compare
ECD_00393 -0.7 -2.5 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_02792 -0.7 -1.4 oxidative damage protective factor for iron-sulfur proteins compare
ECD_02996 -0.7 -2.7 transcriptional repressor of the aga regulon compare
ECD_03735 -0.7 -4.4 NAD(P)H-flavin reductase compare
ECD_03692 -0.7 -3.5 magnesium/nickel/cobalt transporter compare
ECD_01245 -0.7 -2.6 23S rRNA pseudouridine(2605) synthase compare
ECD_01482 -0.7 -1.7 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_01488 -0.7 -1.0 putative phage protein compare
ECD_01954 -0.7 -1.2 phosphomannomutase compare
ECD_02769 -0.7 -2.7 uncharacterized protein compare
ECD_03277 -0.7 -3.6 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding compare
ECD_01721 -0.7 -1.4 TVP38/TMEM64 family inner membrane protein compare
ECD_03314 -0.6 -2.9 16S rRNA m(2)G966 methyltransferase, SAM-dependent compare
ECD_02920 -0.6 -1.5 DUF1449 family inner membrane protein compare
ECD_03696 -0.6 -1.0 DUF2628 family putative inner membrane protein compare
ECD_01800 -0.6 -2.3 putative endopeptidase compare
ECD_03207 -0.6 -1.2 OsmC family protein compare
ECD_01747 -0.6 -1.8 methionine sulfoxide reductase B compare
ECD_00142 -0.6 -2.2 poly(A) polymerase compare
ECD_00389 -0.6 -2.5 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_02211 -0.6 -3.3 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_01562 -0.6 -1.7 putative dethiobiotin synthetase compare
ECD_02404 -0.6 -1.1 BamABCDE complex OM biogenesis lipoprotein compare
ECD_03213 -0.6 -1.4 putative antitoxin for Fic compare
ECD_00165 -0.6 -1.9 uridylyltransferase compare
ECD_04107 -0.6 -1.3 trehalose-6-P hydrolase compare
ECD_03063 -0.6 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
ECD_02470 -0.6 -2.8 ATP-dependent RNA helicase compare
ECD_02210 -0.6 -1.9 NADH:ubiquinone oxidoreductase, chain E compare
ECD_01312 -0.6 -1.2 O-6-alkylguanine-DNA:cysteine-protein methyltransferase compare
ECD_01887 -0.6 -1.8 inner membrane heme subunit for periplasmic YedYZ reductase compare
ECD_02201 -0.6 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_00961 -0.6 -3.8 outer membrane protein A (3a compare
ECD_01763 -0.6 -1.0 diguanylate cyclase compare
ECD_04185 -0.6 -1.0 periplasmic chaperone compare
ECD_03731 -0.6 -2.2 TatABCE protein translocation system subunit compare
ECD_01586 -0.6 -0.9 beta-D-glucuronidase compare
ECD_04211 -0.6 -1.4 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC compare
ECD_02103 -0.6 -1.7 Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein compare
ECD_02208 -0.6 -3.0 NADH:ubiquinone oxidoreductase, chain G compare
ECD_03897 -0.6 -2.0 glucosephosphate isomerase compare
ECD_00432 -0.6 -0.7 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase compare
ECD_01219 -0.6 -1.5 oligopeptide ABC transporter permease compare
ECD_02302 -0.6 -2.5 nucleoside (except guanosine) transporter compare
ECD_00813 -0.6 -1.1 transcriptional regulator of csgD and ybiJI; autoregulator compare
ECD_00464 -0.6 -1.3 glycerate kinase II compare
ECD_01105 -0.5 -2.5 respiratory NADH dehydrogenase 2/cupric reductase compare
ECD_02777 -0.5 -2.2 glutathione synthetase compare
ECD_01593 -0.5 -1.1 putative oxidoreductase compare
ECD_01852 -0.5 -1.4 chemotaxis regulator, protein phosphatase for CheY compare
ECD_04102 -0.5 -3.0 ribosome-associated UPF0307 family protein compare
ECD_02224 -0.5 -1.2 putative NUDIX hydrolase compare
ECD_04111 -0.5 -2.4 enamine/imine deaminase, reaction intermediate detoxification compare
ECD_01210 -0.5 -1.4 putative patatin-like family phospholipase compare
ECD_02203 -0.5 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_00053 -0.5 -1.4 diadenosine tetraphosphatase compare
ECD_00968 -0.5 -1.8 UPF0319 family protein compare
ECD_01365 -0.5 -1.3 putative esterase compare
ECD_r00015 -0.5 -2.9 23S ribosomal RNA compare
ECD_01975 -0.5 -2.0 Hsp70 chaperone family protein compare
ECD_04019 -0.5 -1.0 entericidin B membrane lipoprotein compare
ECD_01160 -0.5 -1.9 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_02930 -0.5 -2.0 transcriptional activator of ttdABT compare
ECD_03837 -0.5 -2.0 putative [formate-C-acetyltransferase 2]-activating enzyme; pyruvate formate-lyase 1-activating enzyme compare
ECD_00420 -0.5 -0.5 adenine phosphoribosyltransferase compare
ECD_00417 -0.5 -1.9 DUF2496 family protein compare
ECD_02174 -0.5 -1.4 putative DNA-binding transcriptional regulator for the rhm operon compare
ECD_01195 -0.5 -0.7 cation transport regulator compare
ECD_03798 -0.5 -0.8 response regulator in two-component regulatory system with CpxA compare
ECD_03657 -0.5 -2.3 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_01247 -0.5 -1.3 putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase compare
ECD_02740 -0.5 -2.5 proline aminopeptidase P II compare
ECD_00388 -0.5 -1.9 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases compare
ECD_03055 -0.5 -1.4 acid stress protein; putative BolA family transcriptional regulator compare
ECD_03569 -0.5 -2.1 heat shock chaperone compare
ECD_04047 -0.5 -2.5 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent compare
ECD_00532 -0.5 -0.9 response regulator in two-component regulatory system with CusS compare
ECD_04250 -0.5 -3.9 peptide chain release factor RF-3 compare
ECD_02727 -0.5 -2.3 flavodoxin 2 compare
ECD_00502 -0.5 -0.8 DLP12 prophage; putative antitermination protein compare
ECD_01829 -0.5 -1.8 zinc ABC transporter ATPase compare
ECD_00682 -0.5 -1.3 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01080 -0.5 -1.6 endoribonuclease; RNA-binding protein compare
ECD_04354 -0.5 -1.6 nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor compare
ECD_03733 -0.5 -3.1 transcription antitermination protein compare
ECD_02737 -0.5 -3.0 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex compare
ECD_01172 -0.5 -1.0 periplasmic trehalase compare
ECD_01396 -0.5 -1.2 putative DNA-binding transcriptional regulator and putative aminotransferase compare
ECD_01307 -0.5 -0.9 murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit compare
ECD_02484 -0.5 -2.9 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_00441 -0.5 -1.7 iron export ABC transporter ATPase; peroxide resistance protein compare
ECD_01021 -0.5 -1.6 deferrrochelatase, periplasmic compare
ECD_02309 -0.5 -1.2 putative inorganic ion transporter compare
ECD_01698 -0.5 -1.9 putative transporter compare
ECD_00652 -0.5 -2.9 fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein compare
ECD_03339 -0.5 -2.2 hypothetical protein compare
ECD_01103 -0.5 -0.7 beta N-acetyl-glucosaminidase compare
ECD_01263 -0.5 -2.2 ribonuclease II compare
ECD_04018 -0.5 -0.7 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_00791 -0.5 -1.3 putative pyruvate formate lyase activating enzyme compare
ECD_03403 -0.4 -2.1 glyoxylate/hydroxypyruvate reductase B compare
ECD_04373 -0.4 -1.6 UV-inducible membrane toxin, DinQ-AgrB type I toxin-antitoxin system compare
ECD_02333 -0.4 -1.3 inner membrane protein compare
ECD_00862 -0.4 -1.6 putrescine ABC transporter permease compare
ECD_03911 -0.4 -1.8 chorismate--pyruvate lyase compare
ECD_01983 -0.4 -1.8 sensory histidine kinase in two-component regulatory system with BaeR compare
ECD_04010 -0.4 -2.0 suppressor of F exclusion of phage T7 compare
ECD_00808 -0.4 -1.5 undecaprenyl pyrophosphate phosphatase compare
ECD_01700 -0.4 -1.1 cell division modulator compare
ECD_02198 -0.4 -1.2 DUF1877 family protein compare
ECD_02195 -0.4 -2.2 RNase BN, tRNA processing enzyme compare
ECD_00150 -0.4 -1.5 iron(3+)-hydroxamate import ABC transporter ATPase compare
ECD_00276 -0.4 -1.6 putative NAD(P)-binding succinyl-CoA synthase compare
ECD_02465 -0.4 -2.9 anti-sigma E factor, binds RseA compare
ECD_04058 -0.4 -2.6 transcriptional repressor for the L-ascorbate utilization divergent operon compare
ECD_04269 -0.4 -1.6 transcriptional repressor, tryptophan-binding compare
ECD_t00019 -0.4 -0.6 tRNA-Lys compare
ECD_02111 -0.4 -1.3 uncharacterized protein compare
ECD_02416 -0.4 -0.8 Fe(2+) donor and activity modulator for cysteine desulfurase compare
ECD_02927 -0.4 -2.2 undecaprenyl pyrophosphate phosphatase compare
ECD_01081 -0.4 -1.0 uncharacterized protein compare
ECD_02852 -0.4 -2.0 hypothetical protein compare
ECD_02206 -0.4 -0.8 NADH:ubiquinone oxidoreductase, chain I compare
ECD_01977 -0.4 -0.9 ser/thr phosphatase-related protein compare
ECD_01695 -0.4 -0.6 putative inner membrane protein compare
ECD_02031 -0.4 -1.4 hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase compare
ECD_02984 -0.4 -1.1 L-threonine dehydratase, catabolic compare
ECD_01866 -0.4 -1.8 trehalose-6-phosphate phosphatase, biosynthetic compare
ECD_02539 -0.4 -2.6 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_00559 -0.4 -1.8 ferrienterobactin ABC transporter periplasmic binding protein compare
ECD_02205 -0.4 -1.5 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_01910 -0.4 -1.0 UPF0265 family protein compare
ECD_01211 -0.4 -1.3 PcnB-degradosome interaction factor; response regulator compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in no stress control experiments