Experiment set11S541 for Escherichia coli BL21

Compare to:

Tailocin 255

200 most important genes:

  gene name fitness t score description  
ECD_00413 -7.5 -10.4 multidrug efflux system protein compare
ECD_00414 -7.4 -7.2 multidrug efflux system compare
ECD_02907 -5.4 -3.7 transport channel compare
ECD_03746 -4.5 -8.7 periplasmic protein disulfide isomerase I compare
ECD_t00077 -2.8 -1.9 tRNA-Thr compare
ECD_03242 -2.6 -2.6 shikimate kinase I compare
ECD_03752 -2.5 -10.8 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent compare
ECD_02726 -2.5 -5.5 site-specific tyrosine recombinase compare
ECD_03036 -2.4 -3.4 transcription termination/antitermination L factor compare
ECD_03037 -2.1 -4.2 ribosome maturation factor for 30S subunits compare
ECD_01826 -2.0 -2.7 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_04038 -1.9 -1.7 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_01160 -1.9 -5.3 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_02399 -1.9 -2.8 GMP synthetase (glutamine aminotransferase) compare
ECD_03687 -1.8 -1.6 site-specific tyrosine recombinase compare
ECD_00053 -1.5 -3.3 diadenosine tetraphosphatase compare
ECD_02470 -1.4 -5.3 ATP-dependent RNA helicase compare
ECD_03119 -1.3 -1.5 global DNA-binding transcriptional dual regulator compare
ECD_03625 -1.3 -3.3 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_03797 -1.3 -4.5 sensory histidine kinase in two-component regulatory system with CpxR compare
ECD_02175 -1.2 -2.4 inactive PncC family protein compare
ECD_01629 -1.2 -2.2 transcriptional repressor, hypoxanthine-binding compare
ECD_02549 -1.2 -5.6 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_02463 -1.1 -3.7 back-translocating elongation factor EF4, GTPase compare
ECD_01985 -1.1 -1.5 UPF0339 family protein compare
ECD_t00038 -1.0 -3.1 tRNA-Arg compare
ECD_03488 -1.0 -2.3 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_02404 -1.0 -2.2 BamABCDE complex OM biogenesis lipoprotein compare
ECD_04091 -1.0 -6.8 translocation and assembly module for autotransporter export, outer membrane subunit compare
ECD_03001 -1.0 -2.0 putative phosphotransferase system enzyme subunit (N-acetyl-galactosamine/galactosamine PTS system enzyme IIA component) compare
ECD_00941 -1.0 -2.1 NAD(P)H-dependent FMN reductase compare
ECD_03238 -1.0 -2.0 D-ribulose-5-phosphate 3-epimerase compare
ECD_02103 -0.9 -2.9 Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein compare
ECD_01307 -0.9 -1.5 murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit compare
ECD_02765 -0.9 -3.6 transketolase 1, thiamine triphosphate-binding compare
ECD_02207 -0.9 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_03692 -0.9 -4.6 magnesium/nickel/cobalt transporter compare
ECD_00371 -0.9 -4.6 tRNA s(4)U8 sulfurtransferase compare
ECD_01957 -0.9 -1.7 GDP-mannose mannosyl hydrolase compare
ECD_03695 -0.9 -1.1 Magnesium and cobalt transport protein corA compare
ECD_01571 -0.8 -1.8 pyridine nucleotide transhydrogenase, beta subunit compare
ECD_02738 -0.8 -1.6 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_02539 -0.8 -5.4 transcriptional repressor of microcin B17 synthesis and multidrug efflux compare
ECD_03357 -0.8 -1.1 acid-resistance protein compare
ECD_03756 -0.8 -5.4 GTP-binding protein compare
ECD_00380 -0.8 -1.2 cytochrome o ubiquinol oxidase subunit IV compare
ECD_01755 -0.8 -2.2 putative diguanylate cyclase compare
ECD_04092 -0.8 -6.6 translocation and assembly module for autotransporter export, inner membrane subunit compare
ECD_03696 -0.8 -1.2 DUF2628 family putative inner membrane protein compare
ECD_01278 -0.8 -3.1 gamma-glutamylputrescine oxidoreductase compare
ECD_01954 -0.8 -1.1 phosphomannomutase compare
ECD_03097 -0.8 -3.5 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_03407 -0.8 -2.1 toxic polypeptide, small compare
ECD_02027 -0.8 -1.3 ADP-ribosylglycohydrolase family protein compare
ECD_01162 -0.8 -1.3 fatty acid metabolism regulon transcriptional regulator compare
ECD_03033 -0.8 -5.0 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase compare
ECD_01168 -0.8 -1.3 lytic murein endotransglycosylase E compare
ECD_02076 -0.8 -1.1 dihydropyrimidine dehydrogenase, NADH-dependent, subunit C compare
ECD_02101 -0.7 -2.0 elongation factor P-like protein compare
ECD_00899 -0.7 -1.9 dimethyl sulfoxide reductase, anaerobic, subunit B compare
ECD_04193 -0.7 -1.5 fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor compare
ECD_01792 -0.7 -2.0 23S rRNA m(1)G745 methyltransferase, SAM-dependent compare
ECD_01080 -0.7 -2.1 endoribonuclease; RNA-binding protein compare
ECD_01692 -0.7 -2.4 6-phosphofructokinase II compare
ECD_01866 -0.7 -1.7 trehalose-6-phosphate phosphatase, biosynthetic compare
ECD_00925 -0.7 -1.7 putative S-adenosyl-L-methionine-dependent methyltransferase compare
ECD_02832 -0.7 -1.0 putative type II secretion protein GspJ compare
ECD_01726 -0.7 -1.5 molybdopterin synthase sulfurtransferase compare
ECD_02208 -0.7 -2.8 NADH:ubiquinone oxidoreductase, chain G compare
ECD_02205 -0.7 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_01409 -0.7 -1.7 ATP-binding protein, periplasmic, function unknown compare
ECD_01842 -0.7 -1.8 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent compare
ECD_00501 -0.7 -2.1 uncharacterized protein, DLP12 prophage compare
ECD_01814 -0.7 -1.3 C-N hydrolase family protein compare
ECD_02484 -0.7 -4.5 23S rRNA pseudouridine(1911,1915,1917) synthase compare
ECD_02365 -0.7 -1.1 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_02324 -0.7 -1.4 sulfate/thiosulfate ABC transporter permease compare
ECD_02671 -0.7 -2.7 putative prepilin peptidase-dependent protein compare
ECD_03508 -0.7 -1.8 tRNA mG18-2'-O-methyltransferase, SAM-dependent compare
ECD_03920 -0.7 -1.7 uncharacterized protein compare
ECD_00997 -0.7 -2.1 periplasmic sensory protein associated with the TorRS two-component regulatory system compare
ECD_02130 -0.7 -0.7 nitrate reductase, small, cytochrome C550 subunit, periplasmic compare
ECD_01775 -0.7 -1.4 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) compare
ECD_00136 -0.7 -2.4 putative fimbrial-like adhesin protein compare
ECD_02431 -0.7 -1.9 3-phenylpropionate dioxygenase, small (beta) subunit compare
ECD_01488 -0.7 -1.3 putative phage protein compare
ECD_02459 -0.7 -1.6 gap repair protein compare
ECD_02694 -0.7 -0.9 putative LuxR family transcriptional regulator compare
ECD_01375 -0.6 -1.2 putative periplasmic protein compare
ECD_00393 -0.6 -2.0 periplasmic folding chaperone, has an inactive PPIase domain compare
ECD_04235 -0.6 -1.8 L-galactonate oxidoreductase; L-gulonate oxidoreductase compare
ECD_02820 -0.6 -0.8 hypothetical protein compare
ECD_02914 -0.6 -1.8 BMFP family putative fusogenic protein compare
ECD_01645 -0.6 -1.3 pyruvate kinase I compare
ECD_00209 -0.6 -0.8 lipoprotein compare
ECD_00998 -0.6 -1.7 response regulator in two-component regulatory system with TorS compare
ECD_00835 -0.6 -1.6 hypothetical protein compare
ECD_03611 -0.6 -3.3 phosphate ABC transporter permease compare
ECD_01250 -0.6 -1.4 DNA topoisomerase I, omega subunit compare
ECD_00438 -0.6 -0.9 copper-responsive regulon transcriptional regulator compare
ECD_03643 -0.6 -3.7 UPF0438 family protein compare
ECD_01910 -0.6 -1.3 UPF0265 family protein compare
ECD_02607 -0.6 -1.0 phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent compare
ECD_03005 -0.6 -1.5 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_01019 -0.6 -1.5 putative membrane protein compare
ECD_03610 -0.6 -1.5 phosphate ABC transporter permease compare
ECD_01706 -0.6 -1.1 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_00134 -0.6 -2.1 putative fimbrial-like adhesin protein compare
ECD_00889 -0.6 -0.9 leucyl/phenylalanyl-tRNA-protein transferase compare
ECD_01606 -0.6 -1.4 pyridoxamine kinase compare
ECD_00634 -0.6 -1.5 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_00015 -0.6 -2.2 chaperone Hsp40, DnaK co-chaperone compare
ECD_04070 -0.6 -1.3 50S ribosomal subunit protein L9 compare
ECD_00689 -0.6 -1.6 transcriptional repressor for the mannosyl-D-glycerate catabolic operon compare
ECD_00849 -0.6 -1.4 putative DNA-invertase compare
ECD_02170 -0.6 -2.5 transposase_31 family protein compare
ECD_02035 -0.6 -2.7 hypothetical protein compare
ECD_02097 -0.6 -1.4 fructose-1-phosphate kinase compare
ECD_01221 -0.6 -1.4 oligopeptide ABC transporter ATPase compare
ECD_00594 -0.6 -1.5 fluoride efflux channel, dual topology membrane protein compare
ECD_01084 -0.6 -2.5 DUF177 family protein compare
ECD_02309 -0.6 -2.0 putative inorganic ion transporter compare
ECD_00415 -0.5 -3.1 transcriptional repressor compare
ECD_01435 -0.5 -1.0 putative DNA-binding transcriptional regulator compare
ECD_03898 -0.5 -1.5 extracellular polysaccharide production threonine-rich protein compare
ECD_01668 -0.5 -1.0 putative oxidoreductase compare
ECD_02075 -0.5 -2.4 dihydropyrimidine dehydrogenase, NADH-dependent, subunit N compare
ECD_00165 -0.5 -1.6 uridylyltransferase compare
ECD_02774 -0.5 -1.5 Zn-dependent metalloprotease-related protein compare
ECD_01482 -0.5 -1.4 succinate semialdehyde dehydrogenase, NAD(P)+-dependent compare
ECD_03733 -0.5 -2.9 transcription antitermination protein compare
ECD_02729 -0.5 -2.5 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair compare
ECD_01404 -0.5 -1.7 DUF606 family inner membrane protein compare
ECD_01657 -0.5 -1.6 UPF0118 family inner membrane protein compare
ECD_01593 -0.5 -1.3 putative oxidoreductase compare
ECD_02118 -0.5 -2.2 essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor compare
ECD_00994 -0.5 -1.0 putative phosphatidylethanolamine synthesis regulator compare
ECD_00176 -0.5 -0.7 periplasmic chaperone compare
ECD_t00083 -0.5 -1.0 tRNA-Leu compare
ECD_02384 -0.5 -1.4 putative formate transporter compare
ECD_02508 -0.5 -0.7 tmRNA-binding trans-translation protein compare
ECD_00326 -0.5 -0.8 DUF2755 family inner membrane protein compare
ECD_00500 -0.5 -1.0 DLP12 prophage; endonuclease RUS compare
ECD_02815 -0.5 -3.0 Capsule polysaccharide export inner-membrane protein kpsE compare
ECD_03489 -0.5 -3.0 lipopolysaccharide core biosynthesis protein compare
ECD_r00015 -0.5 -2.1 23S ribosomal RNA compare
ECD_00446 -0.5 -2.0 putative ABC transporter ATPase compare
ECD_03046 -0.5 -2.0 transcript cleavage factor compare
ECD_00596 -0.5 -1.0 TatABCE protein translocation system subunit compare
ECD_01287 -0.5 -2.0 putative ABC sugar transporter periplasmic binding protein compare
ECD_03276 -0.5 -2.9 thiosulfate:cyanide sulfurtransferase (rhodanese) compare
ECD_01562 -0.5 -2.0 putative dethiobiotin synthetase compare
ECD_03031 -0.5 -2.6 polynucleotide phosphorylase/polyadenylase compare
ECD_01838 -0.5 -2.2 isochorismatase family protein compare
ECD_02202 -0.5 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_02833 -0.5 -1.4 putative type II secretion protein GspI compare
ECD_03425 -0.5 -1.0 putative hydrogenase, 4Fe-4S ferredoxin-type component compare
ECD_04093 -0.5 -1.4 GGCT-like protein compare
ECD_01262 -0.5 -1.3 cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability compare
ECD_03727 -0.5 -1.4 aerobic ubiquinone synthesis protein, SCP2 family protein compare
ECD_02995 -0.5 -2.1 toxin of the SohB(PrlF)-YhaV toxin-antitoxin system compare
ECD_03339 -0.5 -2.5 hypothetical protein compare
ECD_02220 -0.5 -0.9 UPF0208 family inner membrane protein compare
ECD_00021 -0.5 -1.4 putative usher protein compare
ECD_01211 -0.5 -1.3 PcnB-degradosome interaction factor; response regulator compare
ECD_03798 -0.5 -0.8 response regulator in two-component regulatory system with CpxA compare
ECD_02681 -0.5 -2.6 DUF903 family verified lipoprotein compare
ECD_t00019 -0.5 -0.6 tRNA-Lys compare
ECD_02899 -0.5 -0.7 inner membrane protein compare
ECD_01452 -0.5 -0.9 putative periplasmic M16 family zinc metalloendopeptidase compare
ECD_02048 -0.5 -1.6 putative hexameric AAA+ MoxR family ATPase compare
ECD_01561 -0.5 -1.3 H(+)/Cl(-) exchange transporter compare
ECD_02210 -0.5 -1.6 NADH:ubiquinone oxidoreductase, chain E compare
ECD_00389 -0.5 -2.3 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease compare
ECD_00646 -0.5 -2.3 lipoprotein compare
ECD_00682 -0.5 -1.8 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_03657 -0.5 -2.5 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_01614 -0.5 -1.1 putative membrane fusion protein (MFP) of YdhJK efflux pump compare
ECD_00045 -0.5 -1.8 anaerobic carnitine reduction putative electron transfer flavoprotein subunit compare
ECD_01220 -0.5 -2.1 oligopeptide ABC transporter ATPase compare
ECD_03220 -0.5 -0.6 small lipoprotein compare
ECD_00969 -0.5 -1.1 putative CoA-binding protein compare
ECD_04308 -0.5 -1.1 uncharacterized protein compare
ECD_02209 -0.5 -1.7 NADH:ubiquinone oxidoreductase, chain F compare
ECD_02111 -0.5 -1.0 uncharacterized protein compare
ECD_03029 -0.5 -1.9 ATP-dependent RNA helicase compare
ECD_01107 -0.5 -1.0 repressor for bhsA(ycfR) compare
ECD_01635 -0.5 -1.2 autotransporter adhesin-related protein compare
ECD_00399 -0.5 -1.7 putative DNA-binding transcriptional regulator compare
ECD_01727 -0.5 -0.9 CDP-alcohol phosphatidyltransferase family inner membrane protein compare
ECD_04102 -0.5 -2.1 ribosome-associated UPF0307 family protein compare
ECD_01365 -0.4 -1.1 putative esterase compare
ECD_01557 -0.4 -1.8 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_00878 -0.4 -2.0 hybrid-cluster [4Fe-2S-2O] subunit of anaerobic terminal reductases compare
ECD_00786 -0.4 -2.0 L,D-transpeptidase linking Lpp to murein compare
ECD_02218 -0.4 -1.2 sugar phosphatase compare
ECD_00366 -0.4 -1.6 phosphatidylglycerophosphatase A compare
ECD_00670 -0.4 -0.8 NIF3 family metal-binding protein compare
ECD_00763 -0.4 -1.7 DUF1956 domain-containing tetR family putative transcriptional regulator compare
ECD_01912 -0.4 -1.0 DNA gyrase inhibitor compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in stress experiments

For stress Tailocin 255 across organisms