Experiment set11IT095 for Agrobacterium fabrum C58

Compare to:

LB control

200 most important genes:

  gene name fitness t score description  
Atu2125 -2.7 -2.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu3008 -2.0 -1.6 hypothetical protein compare
Atu1354 -1.6 -2.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0030 -1.2 -2.3 phosphocarrier protein HPr compare
Atu1810 -1.2 -1.4 hypothetical protein compare
Atu4890 -1.2 -2.1 IS426 transposase compare
Atu2793 -1.1 -5.1 cobyrinic acid a,c-diamide synthase compare
Atu0031 -1.1 -1.8 PTS system, IIA component compare
Atu3469 -1.1 -2.2 phosphoglyceromutase compare
Atu2684 -1.1 -2.2 hypothetical protein compare
Atu8082 -1.1 -2.2 hypothetical protein compare
Atu4217 -1.1 -2.0 TetR family transcriptional regulator compare
Atu1364 -1.1 -5.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3750 -1.0 -2.0 thiamine-phosphate pyrophosphorylase compare
Atu4469 -1.0 -3.0 iron ABC transporter permease compare
Atu0141 -1.0 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu0421 -1.0 -1.6 ABC transporter, membrane spanning protein compare
Atu2800 -0.9 -2.9 precorrin-3B C17-methyltransferase compare
Atu2832 -0.9 -3.0 tRNA modification GTPase compare
Atu0912 -0.9 -1.6 Na+/H+ antiporter compare
Atu1446 -0.9 -2.1 two component response regulator compare
Atu1327 -0.9 -3.1 NADH-ubiquinone oxidoreductase compare
Atu4317 -0.9 -2.0 TetR family transcriptional regulator compare
Atu0999 -0.9 -4.3 magnesium transport protein compare
Atu3014 -0.8 -2.1 hypothetical protein compare
Atu4072 -0.8 -1.6 nodulation protein N compare
Atu3183 -0.8 -0.9 hypothetical protein compare
Atu0601 -0.8 -5.3 oxidoreductase compare
Atu1030 -0.8 -1.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4792 -0.8 -1.4 hypothetical protein compare
Atu8202 -0.8 -2.6 hypothetical protein compare
Atu0971 -0.8 -2.8 two component sensor kinase compare
Atu8018 -0.8 -0.9 hypothetical protein compare
Atu4881 -0.8 -3.6 hypothetical protein compare
Atu1019 -0.8 -2.7 hypothetical protein compare
Atu0658 -0.7 -4.9 phosphate permease compare
Atu3763 -0.7 -1.0 hypothetical protein compare
Atu4144 -0.7 -1.0 hypothetical protein compare
Atu4635 -0.7 -3.6 hypothetical protein compare
Atu0184 -0.7 -1.6 glucokinase compare
Atu3018 -0.7 -2.8 hypothetical protein compare
Atu0784 -0.7 -2.3 hypothetical protein compare
Atu6098 -0.7 -0.9 transcriptional regulator, HTH family compare
Atu0843 -0.7 -5.6 P type cation (metal) transporter, ATPase component compare
Atu1760 -0.7 -1.2 hypothetical protein compare
Atu2728 -0.6 -2.8 beta (1-->2) glucan export ATP-binding protein compare
Atu2831 -0.6 -2.7 glucose inhibited division protein A compare
Atu0050 -0.6 -3.2 two component response regulator compare
Atu2633 -0.6 -1.4 RhtB family transporter compare
Atu8158 -0.6 -2.4 hypothetical protein compare
Atu1439 -0.6 -1.5 hypothetical protein compare
Atu4616 -0.6 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu4882 -0.6 -1.7 hypothetical protein compare
Atu4630 -0.6 -1.7 hypothetical protein compare
Atu3023 -0.6 -4.0 sugar ABC transporter permease compare
Atu1739 -0.6 -1.8 permease compare
Atu0486 -0.6 -2.7 dihydroorotate dehydrogenase compare
Atu2802 -0.6 -3.2 precorrin-8X methylmutase compare
Atu2796 -0.6 -3.3 precorrin-4 C11-methyltransferase compare
Atu2805 -0.6 -2.7 cobalamin synthesis protein compare
Atu0051 -0.6 -3.0 two component sensor kinase compare
Atu1542 -0.6 -2.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2803 -0.6 -2.0 Cobalamin biosynthesis associated protein compare
Atu3010 -0.6 -3.1 hypothetical protein compare
Atu1846 -0.6 -1.2 hypothetical protein compare
Atu3012 -0.6 -1.1 hypothetical protein compare
Atu1163 -0.6 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0422 -0.6 -1.5 ABC transporter, membrane spanning protein compare
Atu2804 -0.6 -3.7 cobaltochelatase subunit compare
Atu3505 -0.5 -2.8 3-hydroxyisobutyryl-CoA hydrolase compare
Atu1495 -0.5 -2.0 hypothetical protein compare
Atu0029 -0.5 -2.8 S-adenosylhomocysteine hydrolase compare
Atu3009 -0.5 -0.7 exopolysaccharide production protein compare
Atu4514 -0.5 -2.7 RpiR family transcriptional regulator compare
Atu3739 -0.5 -0.7 phosphoglycerate kinase compare
Atu4878 -0.5 -1.9 hypothetical protein compare
Atu2801 -0.5 -1.7 precorrin-2 C20 methyltransferase compare
Atu0149 -0.5 -2.2 enoyl-(acyl-carrier-protein) reductase compare
Atu1480 -0.5 -2.2 hypothetical protein compare
Atu3663 -0.5 -0.9 hypothetical protein compare
Atu3021 -0.5 -3.2 sugar ABC transporter ATPase compare
Atu3019 -0.5 -3.0 hypothetical protein compare
Atu2795 -0.5 -2.6 cobalamin biosynthetic protein compare
Atu1694 -0.5 -2.0 hypothetical protein compare
Atu1449 -0.5 -3.2 potassium uptake protein compare
Atu2207 -0.5 -1.4 two component sensor kinase compare
Atu3015 -0.5 -2.2 hypothetical protein compare
Atu3016 -0.5 -2.6 phosphoglyceromutase compare
Atu3011 -0.5 -1.4 ArsR family transcriptional regulator compare
Atu1573 -0.5 -0.9 hypothetical protein compare
Atu4670 -0.5 -1.7 hypothetical protein compare
Atu2809 -0.5 -3.4 cobalamin biosynthesis protein compare
Atu8191 -0.5 -0.9 hypothetical protein compare
Atu0340 -0.5 -1.0 SAM dependent methyltransferase compare
Atu3022 -0.5 -3.2 sugar ABC transporter permease compare
Atu3910 -0.5 -2.4 LamB/YcsF family protein compare
Atu1184 -0.5 -1.8 hypothetical protein compare
Atu1850 -0.5 -1.7 phosphoribosylformylglycinamidine synthetase II compare
Atu5475 -0.5 -1.6 hypothetical protein compare
Atu4892 -0.5 -3.4 hypothetical protein compare
Atu4025 -0.5 -2.8 ferrichrome ABC transporter ATPase compare
Atu1110 -0.5 -1.6 cytosol aminopeptidase compare
Atu0638 -0.5 -1.7 hypothetical protein compare
Atu2640 -0.5 -2.0 hypothetical protein compare
Atu2052 -0.5 -2.3 hypothetical protein compare
Atu0566 -0.5 -1.3 hypothetical protein compare
Atu0922 -0.5 -1.5 hypothetical protein compare
Atu4889 -0.5 -2.0 hypothetical protein compare
Atu0185 -0.5 -1.4 methylglyoxal synthase compare
Atu0322 -0.5 -2.3 enoyl CoA hydratase compare
Atu0767 -0.5 -2.4 cytochrome c oxidase subunit II compare
Atu1678 -0.5 -2.4 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu2783 -0.5 -1.8 acetyltransferase compare
Atu2245 -0.5 -3.3 Na+/Pi-cotransporter compare
Atu5088 -0.5 -1.7 hypothetical protein compare
Atu8096 -0.5 -1.0 hypothetical protein compare
Atu2123 -0.4 -2.3 methylenetetrahydrofolate reductase compare
Atu8099 -0.4 -1.8 hypothetical protein compare
Atu2317 -0.4 -1.6 hypothetical protein compare
Atu1904 -0.4 -1.3 transcriptional regulator compare
Atu2184 -0.4 -2.2 transcriptional regulator, AsnC family compare
Atu3467 -0.4 -1.0 hypothetical protein compare
Atu0038 -0.4 -2.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu5501 -0.4 -0.9 hypothetical protein compare
Atu2352 -0.4 -1.3 hypothetical protein compare
Atu4137 -0.4 -1.7 hypothetical protein compare
Atu3252 -0.4 -2.3 GntR family transcriptional regulator compare
Atu3020 -0.4 -2.4 GntR family transcriptional regulator compare
Atu0298 -0.4 -2.4 orotidine 5 compare
Atu2073 -0.4 -2.3 membrane protein compare
Atu8169 -0.4 -2.1 hypothetical protein compare
Atu1869 -0.4 -1.3 hypothetical protein compare
Atu2810 -0.4 -3.3 cobalamin biosynthetic protein compare
Atu1759 -0.4 -2.9 L-serine dehydratase compare
Atu2124 -0.4 -2.4 transcriptional regulator, ArsR family compare
Atu4897 -0.4 -0.5 hypothetical protein compare
Atu2650 -0.4 -3.0 glycerol-3-phosphate dehydrogenase compare
Atu2439 -0.4 -0.9 hypothetical protein compare
Atu1640 -0.4 -1.3 hypothetical protein compare
Atu4877 -0.4 -2.7 short-chain dehydrogenase compare
Atu2045 -0.4 -1.5 HFLK protein compare
Atu0295 -0.4 -1.5 hypothetical protein compare
Atu2679 -0.4 -2.2 esterase compare
Atu1902 -0.4 -2.0 transketolase compare
Atu0467 -0.4 -1.2 hypothetical protein compare
Atu0153 -0.4 -2.2 transcriptional regulator, Fur family compare
Atu1874 -0.4 -1.3 RecA protein compare
Atu3024 -0.4 -3.1 sugar ABC transporter permease compare
Atu0659 -0.4 -1.7 NTP pyrophosphohydrolase, MutT family compare
Atu6195 -0.4 -2.0 conserved hypothetical protein compare
Atu4879 -0.4 -1.9 hypothetical protein compare
Atu2786 -0.4 -1.8 hypothetical protein compare
Atu0689 -0.4 -2.7 ribosomal large subunit pseudouridine synthase B compare
Atu0086 -0.4 -0.5 ribosome-binding factor A compare
Atu1677 -0.4 -1.6 queuine tRNA-ribosyltransferase compare
Atu2537 -0.4 -1.8 transcriptional regulator, TetR family compare
Atu0036 -0.4 -1.5 hypothetical protein compare
Atu2344 -0.4 -1.1 lactoylglutathione lyase compare
Atu2799 -0.4 -1.7 precorrin-6x reductase compare
Atu4884 -0.4 -1.5 hypothetical protein compare
Atu0947 -0.4 -1.6 transcriptional regulator, AsnC family compare
Atu0953 -0.4 -0.6 hypothetical protein compare
Atu0888 -0.4 -2.2 transcriptional regulator, MerR family compare
Atu1026 -0.4 -1.1 hypothetical protein compare
Atu0399 -0.4 -1.8 dihydroorotase compare
Atu3754 -0.4 -2.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1680 -0.4 -2.3 peptidyl prolyl cis-trans isomerase compare
Atu0119 -0.4 -0.7 hypothetical protein compare
Atu0981 -0.4 -2.8 glutamate-ammonia-ligase adenylyltransferase compare
Atu8165 -0.4 -1.0 hypothetical protein compare
Atu1513 -0.4 -2.0 ABC excinuclease subunit A compare
Atu0448 -0.4 -1.5 hypothetical protein compare
Atu3707 -0.4 -1.0 phosphoserine aminotransferase compare
Atu3721 -0.4 -1.0 hypothetical protein compare
Atu3124 -0.4 -1.4 hypothetical protein compare
Atu0687 -0.4 -0.8 hypothetical protein compare
Atu1005 -0.4 -1.2 hypothetical protein compare
Atu1344 -0.4 -1.1 hypothetical protein compare
Atu2692 -0.4 -1.3 intracellular septation protein compare
Atu4449 -0.4 -1.6 sorbitol/mannitol ABC transporter permease compare
Atu4887 -0.4 -1.5 hypothetical protein compare
Atu3486 -0.4 -1.2 DeoR family transcriptional regulator compare
Atu3730 -0.4 -0.6 hypothetical protein compare
Atu4599 -0.4 -2.4 IclR family transcriptional regulator compare
Atu2794 -0.4 -1.6 uroporphyrin-III C-methyltransferase compare
Atu5026 -0.4 -1.4 hypothetical protein compare
Atu5183 -0.4 -2.1 hypothetical protein compare
Atu1241 -0.3 -1.4 hypothetical protein compare
Atu0294 -0.3 -2.4 undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein compare
Atu1339 -0.3 -1.0 ribonuclease E compare
Atu4888 -0.3 -1.4 hypothetical protein compare
Atu4894 -0.3 -1.7 transposase compare
Atu0434 -0.3 -0.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2806 -0.3 -1.8 hypothetical protein compare
Atu1177 -0.3 -1.3 hypothetical protein compare
Atu3463 -0.3 -1.8 non-heme chloroperoxidase compare
Atu3475 -0.3 -1.8 acetyl-CoA C-acetyltransferase compare
Atu4019 -0.3 -2.0 two component response regulator compare
Atu3395 -0.3 -1.8 iron (III ABC transporter permease ABC transporter permease compare
Atu0267 -0.3 -1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments