Experiment set11IT094 for Agrobacterium fabrum C58

Compare to:

LB with Phenoxyacetic acid 5 mM

200 most important genes:

  gene name fitness t score description  
Atu3469 -3.2 -4.2 phosphoglyceromutase compare
Atu0999 -2.8 -10.3 magnesium transport protein compare
Atu0422 -2.6 -3.5 ABC transporter, membrane spanning protein compare
Atu1086 -2.6 -13.8 MFS permease compare
Atu0912 -2.3 -2.1 Na+/H+ antiporter compare
Atu1087 -2.3 -9.5 secretion protein compare
Atu1359 -2.0 -1.9 dnaK deletion suppressor protein compare
Atu0184 -1.9 -3.5 glucokinase compare
Atu1810 -1.9 -2.4 hypothetical protein compare
Atu0141 -1.9 -2.2 cytochrome O ubiquinol oxidase subunit I compare
Atu3739 -1.8 -3.1 phosphoglycerate kinase compare
Atu0769 -1.8 -2.2 protoheme IX farnesyltransferase compare
Atu3730 -1.8 -2.3 hypothetical protein compare
Atu2125 -1.8 -2.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0051 -1.7 -6.5 two component sensor kinase compare
Atu0031 -1.6 -2.3 PTS system, IIA component compare
Atu1030 -1.6 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4217 -1.6 -2.7 TetR family transcriptional regulator compare
Atu0434 -1.5 -3.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3183 -1.4 -1.4 hypothetical protein compare
Atu0843 -1.4 -11.2 P type cation (metal) transporter, ATPase component compare
Atu1085 -1.4 -4.4 transcriptional regulator, MarR family compare
Atu4317 -1.3 -3.6 TetR family transcriptional regulator compare
Atu3598 -1.3 -2.9 thiol:disulfide interchange protein compare
Atu3663 -1.3 -1.7 hypothetical protein compare
Atu0142 -1.2 -2.9 cytochrome o ubiquinol oxidase subunit II compare
Atu0784 -1.2 -3.6 hypothetical protein compare
Atu0025 -1.2 -1.4 hypothetical protein compare
Atu4773 -1.2 -1.8 two component response regulator compare
Atu0399 -1.1 -4.8 dihydroorotase compare
Atu4148 -1.1 -5.2 UDP-glucuronic acid epimerase compare
Atu3727 -1.1 -4.8 hypothetical protein compare
Atu2787 -1.1 -1.6 hypothetical protein compare
Atu2585 -1.1 -4.2 hypothetical protein compare
Atu0598 -1.1 -6.8 phosphogluconate dehydratase compare
Atu3014 -1.1 -2.0 hypothetical protein compare
Atu2832 -1.0 -3.1 tRNA modification GTPase compare
Atu6098 -1.0 -1.2 transcriptional regulator, HTH family compare
Atu2800 -1.0 -3.2 precorrin-3B C17-methyltransferase compare
Atu0050 -1.0 -4.4 two component response regulator compare
Atu0486 -1.0 -4.0 dihydroorotate dehydrogenase compare
Atu0977 -1.0 -3.2 serine protease DO-like protease compare
Atu2582 -1.0 -4.7 UDP-glucose/GDP-mannose dehydrogenase compare
Atu0030 -1.0 -2.0 phosphocarrier protein HPr compare
Atu2633 -1.0 -2.1 RhtB family transporter compare
Atu2590 -0.9 -5.9 hypothetical protein compare
Atu2793 -0.9 -3.5 cobyrinic acid a,c-diamide synthase compare
Atu0659 -0.9 -3.4 NTP pyrophosphohydrolase, MutT family compare
Atu2634 -0.9 -1.8 hypothetical protein compare
Atu4161 -0.9 -2.1 hypothetical protein compare
Atu2592 -0.9 -4.6 hypothetical protein compare
Atu2583 -0.9 -5.8 glycosyltransferase compare
Atu2584 -0.9 -4.3 hypothetical protein compare
Atu4893 -0.9 -3.5 hypothetical protein compare
Atu0331 -0.8 -2.5 sigma-54 modulation protein compare
Atu4133 -0.8 -1.6 hypothetical protein compare
Atu0119 -0.8 -1.4 hypothetical protein compare
Atu0601 -0.8 -5.0 oxidoreductase compare
Atu0039 -0.8 -2.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu4888 -0.8 -3.4 hypothetical protein compare
Atu0421 -0.8 -1.4 ABC transporter, membrane spanning protein compare
Atu4149 -0.8 -5.7 UDP-glucose 6-dehydrogenase compare
Atu8082 -0.8 -1.0 hypothetical protein compare
Atu1446 -0.8 -1.2 two component response regulator compare
Atu2073 -0.8 -3.8 membrane protein compare
Atu2640 -0.8 -2.7 hypothetical protein compare
Atu8138 -0.8 -1.4 hypothetical protein compare
Atu1308 -0.7 -3.6 aspartate carbamoyl transferase catalytic subunit compare
Atu2796 -0.7 -4.0 precorrin-4 C11-methyltransferase compare
Atu4630 -0.7 -1.6 hypothetical protein compare
Atu8034 -0.7 -2.2 hypothetical protein compare
Atu2591 -0.7 -4.0 glucosyltransferase compare
Atu2057 -0.7 -1.9 DNA helicase II compare
Atu0658 -0.7 -4.0 phosphate permease compare
Atu2249 -0.7 -1.1 hypothetical protein compare
Atu2684 -0.7 -1.6 hypothetical protein compare
Atu1904 -0.7 -1.3 transcriptional regulator compare
Atu2577 -0.7 -5.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3019 -0.7 -4.4 hypothetical protein compare
Atu0602 -0.7 -4.3 glutamine synthetase compare
Atu0886 -0.7 -1.4 hypothetical protein compare
Atu8099 -0.7 -2.8 hypothetical protein compare
Atu3010 -0.7 -3.9 hypothetical protein compare
Atu1204 -0.7 -4.0 potassium uptake protein compare
Atu4884 -0.7 -2.6 hypothetical protein compare
Atu1535 -0.7 -1.1 cytochrome c oxidase, FixQ chain compare
Atu4882 -0.6 -1.8 hypothetical protein compare
Atu1891 -0.6 -2.0 cobalamin biosynthesis protein compare
Atu0876 -0.6 -1.4 superoxide dismutase compare
Atu3009 -0.6 -0.9 exopolysaccharide production protein compare
Atu2795 -0.6 -3.9 cobalamin biosynthetic protein compare
Atu4616 -0.6 -1.2 dTDP-4-dehydrorhamnose reductase compare
Atu1760 -0.6 -1.1 hypothetical protein compare
Atu4072 -0.6 -1.1 nodulation protein N compare
Atu2786 -0.6 -3.2 hypothetical protein compare
Atu2804 -0.6 -4.9 cobaltochelatase subunit compare
Atu3712 -0.6 -0.9 hypothetical protein compare
Atu1364 -0.6 -3.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3763 -0.6 -1.0 hypothetical protein compare
Atu2801 -0.6 -2.6 precorrin-2 C20 methyltransferase compare
Atu4077 -0.6 -4.1 glycogen branching protein compare
Atu3505 -0.6 -3.7 3-hydroxyisobutyryl-CoA hydrolase compare
Atu0836 -0.6 -1.8 Glutathione-S-transferase compare
Atu1241 -0.6 -1.8 hypothetical protein compare
Atu4889 -0.6 -3.0 hypothetical protein compare
Atu2809 -0.6 -3.9 cobalamin biosynthesis protein compare
Atu1542 -0.6 -3.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1759 -0.6 -3.8 L-serine dehydratase compare
Atu1344 -0.6 -1.7 hypothetical protein compare
Atu0298 -0.6 -3.3 orotidine 5 compare
Atu1077 -0.6 -2.2 DNA repair protein compare
Atu8202 -0.6 -2.4 hypothetical protein compare
Atu3023 -0.6 -3.6 sugar ABC transporter permease compare
Atu1699 -0.6 -1.4 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu2207 -0.6 -1.8 two component sensor kinase compare
Atu0971 -0.6 -2.2 two component sensor kinase compare
Atu4896 -0.6 -1.0 acetyltransferase compare
Atu0361 -0.6 -1.7 transcriptional regulator compare
Atu2790 -0.6 -1.6 3-isopropylmalate dehydratase, small subunit compare
Atu2620 -0.6 -1.1 hypothetical protein compare
Atu1302 -0.6 -2.0 hypothetical protein compare
Atu3486 -0.6 -1.9 DeoR family transcriptional regulator compare
Atu1449 -0.6 -3.1 potassium uptake protein compare
Atu4472 -0.6 -2.1 hypothetical protein compare
Atu3015 -0.6 -2.6 hypothetical protein compare
Atu4635 -0.6 -2.8 hypothetical protein compare
Atu0746 -0.5 -2.2 hypothetical protein compare
Atu2772 -0.5 -3.0 Invasion protein A compare
Atu1513 -0.5 -2.6 ABC excinuclease subunit A compare
Atu2728 -0.5 -2.3 beta (1-->2) glucan export ATP-binding protein compare
Atu0107 -0.5 -1.0 hypothetical protein compare
Atu0419 -0.5 -1.4 two component sensor kinase compare
Atu2805 -0.5 -2.8 cobalamin synthesis protein compare
Atu0520 -0.5 -2.6 chemotaxis receiver protein compare
Atu3012 -0.5 -0.6 hypothetical protein compare
Atu0043 -0.5 -1.5 imidazoleglycerol-phosphate dehydratase compare
Atu2306 -0.5 -2.8 methionine aminopeptidase compare
Atu1844 -0.5 -1.6 Phosphoribosylformylglycinamidine synthetase compare
Atu1062 -0.5 -1.3 phosphatidylserine synthase compare
Atu0941 -0.5 -0.7 hypothetical protein compare
Atu2810 -0.5 -3.8 cobalamin biosynthetic protein compare
Atu3668 -0.5 -1.6 siderophore biosynthesis protein compare
Atu4880 -0.5 -3.7 AraC family transcriptional regulator compare
Atu3011 -0.5 -1.3 ArsR family transcriptional regulator compare
Atu0062 -0.5 -3.3 transcriptional regulator, ROK family compare
Atu0153 -0.5 -2.9 transcriptional regulator, Fur family compare
Atu1467 -0.5 -1.6 hypothetical protein compare
Atu4099 -0.5 -3.4 hypothetical protein compare
Atu1559 -0.5 -1.9 hypothetical protein compare
Atu4879 -0.5 -3.2 hypothetical protein compare
Atu3008 -0.5 -0.6 hypothetical protein compare
Atu1620 -0.5 -3.3 triosephosphate isomerase compare
Atu0225 -0.5 -0.8 hypothetical protein compare
Atu0842 -0.5 -0.8 hypothetical protein compare
Atu4876 -0.5 -3.3 oxidoreductase compare
Atu2831 -0.5 -2.7 glucose inhibited division protein A compare
Atu0401 -0.5 -3.0 fructokinase compare
Atu4173 -0.5 -1.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu2237 -0.5 -2.4 cytochrome c1 compare
Atu3022 -0.5 -3.0 sugar ABC transporter permease compare
Atu1850 -0.5 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu3021 -0.5 -2.9 sugar ABC transporter ATPase compare
Atu1286 -0.5 -2.5 hypothetical protein compare
Atu1301 -0.5 -1.4 hypothetical protein compare
Atu1339 -0.5 -2.0 ribonuclease E compare
Atu3013 -0.5 -1.5 hypothetical protein compare
Atu1752 -0.5 -1.5 hypothetical protein compare
Atu1739 -0.5 -2.1 permease compare
Atu3001 -0.5 -0.6 hypothetical protein compare
Atu1327 -0.4 -0.8 NADH-ubiquinone oxidoreductase compare
Atu3162 -0.4 -2.6 LacI family transcriptional regulator compare
Atu4391 -0.4 -1.1 nitric oxide reductase NorE protein compare
Atu2001 -0.4 -3.4 excinuclease ABC subunit B compare
Atu4527 -0.4 -1.0 hypothetical protein compare
Atu2245 -0.4 -3.2 Na+/Pi-cotransporter compare
Atu4887 -0.4 -1.9 hypothetical protein compare
Atu1110 -0.4 -1.6 cytosol aminopeptidase compare
Atu0751 -0.4 -1.8 ABC transporter, nucleotide binding/ATPase protein (cobalt) compare
Atu3016 -0.4 -2.4 phosphoglyceromutase compare
Atu2799 -0.4 -1.6 precorrin-6x reductase compare
Atu1619 -0.4 -1.3 protein-export membrane protein SECG compare
Atu0955 -0.4 -1.5 hypothetical protein compare
Atu4881 -0.4 -2.3 hypothetical protein compare
Atu3754 -0.4 -2.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1475 -0.4 -0.9 hypothetical protein compare
Atu6036 -0.4 -0.9 entry-exclusion protein compare
Atu3336 -0.4 -1.7 hypothetical protein compare
Atu5485 -0.4 -1.3 hypothetical protein compare
Atu3289 -0.4 -1.1 thiamine-phosphate pyrophosphorylase compare
Atu4477 -0.4 -2.8 TetR family transcriptional regulator compare
Atu0040 -0.4 -0.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3024 -0.4 -2.8 sugar ABC transporter permease compare
Atu1387 -0.4 -0.8 transcriptional regulator, GntR family compare
Atu8169 -0.4 -1.5 hypothetical protein compare
Atu1734 -0.4 -1.2 hypothetical protein compare
Atu2798 -0.4 -1.9 precorrin-6y methyltransferase compare
Atu3413 -0.4 -1.5 AsnC family transcriptional regulator compare
Atu0689 -0.4 -2.9 ribosomal large subunit pseudouridine synthase B compare
Atu1845 -0.4 -1.6 phosphoribosylformylglycinamidine synthase I compare
Atu0888 -0.4 -1.8 transcriptional regulator, MerR family compare


Specific Phenotypes

For 2 genes in this experiment

For stress Phenoxyacetic acid in Agrobacterium fabrum C58

For stress Phenoxyacetic acid across organisms