Experiment set11IT088 for Agrobacterium fabrum C58

Compare to:

LB with Indole-3-pyruvic acid 5 mM

200 most important genes:

  gene name fitness t score description  
Atu3469 -2.1 -4.0 phosphoglyceromutase compare
Atu1030 -2.0 -2.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1850 -1.9 -5.9 phosphoribosylformylglycinamidine synthetase II compare
Atu2207 -1.9 -2.4 two component sensor kinase compare
Atu0298 -1.8 -6.6 orotidine 5 compare
Atu0912 -1.8 -2.5 Na+/H+ antiporter compare
Atu2684 -1.8 -2.2 hypothetical protein compare
Atu0399 -1.6 -7.1 dihydroorotase compare
Atu0486 -1.6 -6.4 dihydroorotate dehydrogenase compare
Atu0319 -1.5 -1.9 ubiquinone biosynthesis protein compare
Atu0142 -1.5 -3.9 cytochrome o ubiquinol oxidase subunit II compare
Atu1810 -1.5 -1.6 hypothetical protein compare
Atu4148 -1.5 -5.6 UDP-glucuronic acid epimerase compare
Atu0025 -1.5 -1.9 hypothetical protein compare
Atu2083 -1.4 -4.4 DNA repair protein RecN compare
Atu1308 -1.4 -6.2 aspartate carbamoyl transferase catalytic subunit compare
Atu4616 -1.4 -2.3 dTDP-4-dehydrorhamnose reductase compare
Atu2125 -1.4 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0434 -1.4 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0031 -1.3 -2.0 PTS system, IIA component compare
Atu0400 -1.3 -4.1 orotate phosphoribosyltransferase compare
Atu3008 -1.3 -1.2 hypothetical protein compare
Atu3754 -1.3 -7.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2585 -1.3 -5.5 hypothetical protein compare
Atu2590 -1.2 -6.6 hypothetical protein compare
Atu3598 -1.2 -2.7 thiol:disulfide interchange protein compare
Atu4890 -1.2 -2.2 IS426 transposase compare
Atu0040 -1.2 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0659 -1.2 -5.1 NTP pyrophosphohydrolase, MutT family compare
Atu0647 -1.2 -6.2 phosphoribosylamine--glycine ligase compare
Atu0030 -1.1 -2.1 phosphocarrier protein HPr compare
Atu3755 -1.1 -4.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4149 -1.1 -8.0 UDP-glucose 6-dehydrogenase compare
Atu1307 -1.1 -5.0 dihydroorotase compare
Atu4884 -1.1 -3.0 hypothetical protein compare
Atu1570 -1.1 -1.2 hypothetical protein compare
Atu2591 -1.1 -5.0 glucosyltransferase compare
Atu6098 -1.1 -1.2 transcriptional regulator, HTH family compare
Atu1141 -1.1 -3.5 Phosphoribosylglycinamide synthetase compare
Atu0784 -1.1 -2.8 hypothetical protein compare
Atu2577 -1.0 -8.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu0189 -1.0 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1359 -1.0 -1.3 dnaK deletion suppressor protein compare
Atu2662 -1.0 -1.6 acetyltransferase compare
Atu3013 -1.0 -3.4 hypothetical protein compare
Atu2583 -1.0 -6.7 glycosyltransferase compare
Atu1140 -1.0 -2.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1354 -1.0 -1.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3009 -1.0 -1.3 exopolysaccharide production protein compare
Atu0422 -1.0 -2.4 ABC transporter, membrane spanning protein compare
Atu8202 -1.0 -3.3 hypothetical protein compare
Atu1075 -0.9 -5.4 amidophosphoribosyltransferase compare
Atu2592 -0.9 -4.7 hypothetical protein compare
Atu0836 -0.9 -2.8 Glutathione-S-transferase compare
Atu2584 -0.9 -4.2 hypothetical protein compare
Atu0533 -0.9 -1.2 putative inhibitor of septum formation compare
Atu0051 -0.9 -4.4 two component sensor kinase compare
Atu1364 -0.9 -3.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2801 -0.9 -2.9 precorrin-2 C20 methyltransferase compare
Atu8165 -0.9 -0.8 hypothetical protein compare
Atu4882 -0.9 -1.8 hypothetical protein compare
Atu0999 -0.9 -5.1 magnesium transport protein compare
Atu3486 -0.8 -2.0 DeoR family transcriptional regulator compare
Atu4317 -0.8 -2.8 TetR family transcriptional regulator compare
Atu2582 -0.8 -4.0 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1110 -0.8 -2.2 cytosol aminopeptidase compare
Atu3015 -0.8 -3.7 hypothetical protein compare
Atu3001 -0.8 -1.3 hypothetical protein compare
Atu0601 -0.8 -5.3 oxidoreductase compare
Atu3739 -0.8 -2.4 phosphoglycerate kinase compare
Atu0421 -0.8 -1.3 ABC transporter, membrane spanning protein compare
Atu0886 -0.8 -1.1 hypothetical protein compare
Atu2017 -0.8 -0.9 hypothetical protein compare
Atu0062 -0.8 -4.0 transcriptional regulator, ROK family compare
Atu0029 -0.8 -4.1 S-adenosylhomocysteine hydrolase compare
Atu0638 -0.8 -2.3 hypothetical protein compare
Atu0572 -0.7 -2.8 hypothetical protein compare
Atu2555 -0.7 -3.3 L-lysine 2,3-aminomutase compare
Atu2803 -0.7 -2.4 Cobalamin biosynthesis associated protein compare
Atu0141 -0.7 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu4630 -0.7 -2.0 hypothetical protein compare
Atu0842 -0.7 -1.6 hypothetical protein compare
Atu0340 -0.7 -1.4 SAM dependent methyltransferase compare
Atu0566 -0.7 -1.7 hypothetical protein compare
Atu4893 -0.7 -2.3 hypothetical protein compare
Atu1845 -0.7 -2.7 phosphoribosylformylglycinamidine synthase I compare
Atu0977 -0.7 -2.8 serine protease DO-like protease compare
Atu0184 -0.7 -2.1 glucokinase compare
Atu0050 -0.7 -2.7 two component response regulator compare
Atu0658 -0.7 -4.7 phosphate permease compare
Atu1678 -0.7 -3.6 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu4889 -0.7 -2.7 hypothetical protein compare
Atu3727 -0.7 -2.9 hypothetical protein compare
Atu4773 -0.7 -1.3 two component response regulator compare
Atu2740 -0.7 -2.0 transcriptional regulator, GntR family compare
Atu1446 -0.7 -1.7 two component response regulator compare
Atu4469 -0.6 -3.4 iron ABC transporter permease compare
Atu0039 -0.6 -1.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu4540 -0.6 -1.7 protocatechuate 3,4-dioxygenase subunit beta compare
Atu4876 -0.6 -4.8 oxidoreductase compare
Atu0086 -0.6 -0.9 ribosome-binding factor A compare
Atu6114 -0.6 -3.0 hypothetical protein compare
Atu2831 -0.6 -3.3 glucose inhibited division protein A compare
Atu3019 -0.6 -3.6 hypothetical protein compare
Atu0687 -0.6 -1.8 hypothetical protein compare
Atu1844 -0.6 -1.2 Phosphoribosylformylglycinamidine synthetase compare
Atu1774 -0.6 -3.6 ABC transporter, substrate binding protein (peptide) compare
Atu1339 -0.6 -2.3 ribonuclease E compare
Atu3443 -0.6 -1.6 hypothetical protein compare
Atu1344 -0.6 -1.7 hypothetical protein compare
Atu0598 -0.6 -3.9 phosphogluconate dehydratase compare
Atu1739 -0.6 -2.3 permease compare
Atu2270 -0.6 -1.1 ATP-dependent Clp protease, proteolytic subunit compare
Atu4468 -0.6 -4.0 iron transport ABC transporter permease compare
Atu0769 -0.6 -1.1 protoheme IX farnesyltransferase compare
Atu2832 -0.6 -1.1 tRNA modification GTPase compare
Atu3020 -0.6 -2.9 GntR family transcriptional regulator compare
Atu1099 -0.6 -3.1 hypothetical protein compare
Atu0630 -0.6 -1.8 hypothetical protein compare
Atu2805 -0.6 -3.1 cobalamin synthesis protein compare
Atu3496 -0.6 -1.7 hypothetical protein compare
Atu2795 -0.6 -3.8 cobalamin biosynthetic protein compare
Atu4137 -0.6 -1.9 hypothetical protein compare
Atu2073 -0.6 -3.1 membrane protein compare
Atu2809 -0.6 -3.8 cobalamin biosynthesis protein compare
Atu1584 -0.6 -2.6 hypothetical protein compare
Atu4879 -0.6 -3.2 hypothetical protein compare
Atu1760 -0.5 -1.0 hypothetical protein compare
Atu4792 -0.5 -1.0 hypothetical protein compare
Atu3010 -0.5 -3.3 hypothetical protein compare
Atu3014 -0.5 -1.5 hypothetical protein compare
Atu1513 -0.5 -3.1 ABC excinuclease subunit A compare
Atu2796 -0.5 -2.3 precorrin-4 C11-methyltransferase compare
Atu3712 -0.5 -0.8 hypothetical protein compare
Atu2640 -0.5 -2.3 hypothetical protein compare
Atu3016 -0.5 -2.6 phosphoglyceromutase compare
Atu3910 -0.5 -3.1 LamB/YcsF family protein compare
Atu3012 -0.5 -1.1 hypothetical protein compare
Atu2184 -0.5 -2.6 transcriptional regulator, AsnC family compare
Atu4470 -0.5 -3.7 iron ABC transporter ATPase compare
Atu4161 -0.5 -1.1 hypothetical protein compare
Atu2692 -0.5 -1.8 intracellular septation protein compare
Atu3032 -0.5 -2.1 hypothetical protein compare
Atu1714 -0.5 -1.1 exonuclease III compare
Atu2344 -0.5 -2.0 lactoylglutathione lyase compare
Atu4892 -0.5 -3.7 hypothetical protein compare
Atu4888 -0.5 -2.3 hypothetical protein compare
Atu3505 -0.5 -3.1 3-hydroxyisobutyryl-CoA hydrolase compare
Atu3017 -0.5 -0.7 phosphoglyceromutase compare
Atu3603 -0.5 -1.6 two component response regulator compare
Atu0690 -0.5 -1.1 hypothetical protein compare
Atu1028 -0.5 -0.9 hypothetical protein compare
Atu8117 -0.5 -1.3 hypothetical protein compare
Atu3336 -0.5 -1.8 hypothetical protein compare
Atu1449 -0.5 -3.6 potassium uptake protein compare
Atu2057 -0.5 -1.4 DNA helicase II compare
Atu3023 -0.5 -3.5 sugar ABC transporter permease compare
Atu5045 -0.5 -1.3 hypothetical protein compare
Atu4471 -0.5 -3.8 ABC transporter substrate-binding protein compare
Atu2807 -0.5 -2.2 cob(I)alamin adenosyltransferase compare
Atu1677 -0.5 -2.2 queuine tRNA-ribosyltransferase compare
Atu4072 -0.5 -1.0 nodulation protein N compare
Atu8093 -0.5 -2.4 hypothetical protein compare
Atu3026 -0.5 -2.2 short chain dehydrogenase compare
Atu2548 -0.5 -3.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1327 -0.5 -1.9 NADH-ubiquinone oxidoreductase compare
Atu2052 -0.5 -3.0 hypothetical protein compare
Atu2140 -0.5 -1.6 hypothetical protein compare
Atu4881 -0.5 -2.7 hypothetical protein compare
Atu3395 -0.5 -2.9 iron (III ABC transporter permease ABC transporter permease compare
Atu0606 -0.5 -0.9 hypothetical protein compare
Atu4541 -0.5 -1.7 carboxymuconolactone decarboxylase compare
Atu3492 -0.5 -1.6 sugar kinase compare
Atu4133 -0.5 -0.9 hypothetical protein compare
Atu2746 -0.5 -1.6 hypothetical protein compare
Atu2728 -0.5 -1.9 beta (1-->2) glucan export ATP-binding protein compare
Atu2384 -0.4 -2.0 transcriptional regulator, TetR family compare
Atu2410 -0.4 -2.6 ABC transporter, nucleotide binding/ATPase protein (urea/amide) compare
Atu0538 -0.4 -1.3 hypothetical protein compare
Atu2439 -0.4 -0.9 hypothetical protein compare
Atu4217 -0.4 -0.9 TetR family transcriptional regulator compare
Atu4880 -0.4 -3.1 AraC family transcriptional regulator compare
Atu0520 -0.4 -2.0 chemotaxis receiver protein compare
Atu3033 -0.4 -2.6 hypothetical protein compare
Atu0017 -0.4 -1.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0503 -0.4 -3.8 enoyl-CoA hydratase compare
Atu1759 -0.4 -2.8 L-serine dehydratase compare
Atu0780 -0.4 -3.3 hypothetical protein compare
Atu0185 -0.4 -1.2 methylglyoxal synthase compare
Atu1619 -0.4 -1.8 protein-export membrane protein SECG compare
Atu5115 -0.4 -1.2 hypothetical protein compare
Atu0477 -0.4 -0.9 hypothetical protein compare
Atu1789 -0.4 -2.7 lipoprotein compare
Atu4873 -0.4 -2.4 TetR family transcriptional regulator compare
Atu1573 -0.4 -1.0 hypothetical protein compare
Atu4061 -0.4 -1.6 exopolysaccharide production repressor protein compare
Atu2793 -0.4 -1.9 cobyrinic acid a,c-diamide synthase compare
Atu2824 -0.4 -1.7 hypothetical protein compare
Atu1869 -0.4 -1.6 hypothetical protein compare
Atu2804 -0.4 -3.1 cobaltochelatase subunit compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Indole-3-pyruvic acid across organisms