Experiment set11IT087 for Pseudomonas putida KT2440

Compare to:

carbon source 2-Deoxy-D-glucose 50 mM

200 most important genes:

  gene name fitness t score description  
PP_0787 -5.3 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3511 -5.1 -3.5 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.0 -4.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4678 -4.9 -9.4 Ketol-acid reductoisomerase compare
PP_1110 -4.7 -5.5 serine acetyltransferase compare
PP_4890 -4.7 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_1985 -4.7 -3.2 3-isopropylmalate dehydratase large subunit compare
PP_0293 -4.7 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5097 -4.6 -7.1 homoserine O-acetyltransferase compare
PP_5098 -4.6 -5.5 methionine biosynthesis protein MetW compare
PP_3790 -4.6 -8.7 diaminopimelate epimerase compare
PP_0422 -4.5 -4.4 Indole-3-glycerol phosphate synthase compare
PP_1109 -4.5 -16.5 Transcriptional regulator, GntR family compare
PP_0966 -4.4 -3.1 Histidinol dehydrogenase compare
PP_0967 -4.4 -6.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -4.4 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -4.3 -3.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -4.3 -6.5 3-isopropylmalate dehydrogenase compare
PP_4922 -4.3 -11.6 Phosphomethylpyrimidine synthase compare
PP_5303 -4.2 -2.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1111 -4.2 -7.6 putative Synthetase compare
PP_5348 -4.2 -11.6 Transcriptional regulator, LysR family compare
PP_5104 -4.2 -5.7 thiazole synthase compare
PP_1348 -3.9 -4.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0420 -3.9 -11.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5347 -3.9 -10.2 pyruvate carboxylase subunit A compare
PP_2168 -3.8 -5.8 Transaldolase compare
PP_5346 -3.8 -9.2 pyruvate carboxylase subunit B compare
PP_5155 -3.7 -5.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0417 -3.7 -15.1 Anthranilate synthase component 1 compare
PP_0965 -3.7 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -3.6 -5.0 Imidazoleglycerol-phosphate dehydratase compare
PP_0291 -3.6 -4.3 conserved protein of unknown function compare
PP_5289 -3.6 -2.5 Acetylglutamate kinase compare
PP_1088 -3.6 -5.5 Argininosuccinate synthase compare
PP_2370 -3.6 -2.5 conserved protein of unknown function compare
PP_0421 -3.6 -7.9 Anthranilate phosphoribosyltransferase compare
PP_2001 -3.5 -9.5 O-succinylhomoserine sulfhydrylase compare
PP_1231 -3.5 -3.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1995 -3.4 -4.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5090 -3.4 -1.8 putative cell division protein compare
PP_0362 -3.3 -11.2 Biotin synthase compare
PP_4679 -3.3 -3.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1233 -3.2 -2.2 sulfurtransferase compare
PP_5185 -3.2 -2.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3376 -3.2 -6.9 putative phosphonate dehydrogenase compare
PP_1025 -3.2 -10.6 2-isopropylmalate synthase compare
PP_1079 -3.1 -2.2 Ornithine carbamoyltransferase compare
PP_2388 -3.1 -2.9 Transporter, LysE family compare
PP_2646 -3.1 -3.1 conserved protein of unknown function compare
PP_1986 -3.0 -2.0 3-isopropylmalate dehydratase small subunit compare
PP_2371 -3.0 -3.5 Sulphite reductase hemoprotein, beta subunit compare
PP_5128 -2.9 -6.9 Dihydroxy-acid dehydratase compare
PP_5075 -2.9 -9.0 glutamate synthase (NADPH) beta subunit compare
PP_3506 -2.9 -4.2 Magnesium chelatase, subunit ChII compare
PP_5076 -2.8 -16.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_2348 -2.8 -4.3 Sensor histidine kinase compare
PP_2327 -2.8 -1.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5202 -2.7 -3.2 putative cell division protein compare
PP_0377 -2.7 -1.6 coenzyme PQQ synthesis protein D compare
PP_2645 -2.7 -8.6 magnesium transporter, ATP-dependent compare
PP_3244 -2.7 -2.4 Magnesium transporter, MgtC family compare
PP_4726 -2.6 -3.0 Chaperone protein DnaJ compare
PP_2217 -2.6 -4.0 enoyl-CoA hydratase compare
PP_2390 -2.6 -4.7 Transcriptional regulator, LysR family compare
PP_4782 -2.5 -2.4 Phosphomethylpyrimidine kinase compare
PP_4909 -2.5 -2.4 phosphoserine phosphatase compare
PP_3999 -2.4 -2.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5015 -2.4 -1.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2031 -2.2 -1.6 conserved protein of unknown function compare
PP_0022 -2.1 -1.1 hypothetical protein compare
PP_3245 -2.1 -0.9 conserved protein of unknown function compare
PP_0082 -2.1 -2.4 tryptophan synthase alpha chain compare
PP_0735 -2.0 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_2016 -2.0 -2.5 conserved protein of unknown function compare
PP_2433 -2.0 -3.1 conserved protein of unknown function compare
PP_2714 -1.9 -4.2 Sensor histidine kinase compare
PP_5320 -1.9 -5.5 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_4917 -1.9 -3.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0261 -1.8 -4.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4937 -1.8 -4.0 toluene tolerance protein compare
PP_3938 -1.8 -2.2 conserved protein of unknown function compare
PP_4684 -1.8 -4.7 conserved protein of unknown function with kinase-like domain compare
PP_5027 -1.8 -1.9 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4723 -1.7 -1.2 Carbamoyl-phosphate synthase large chain compare
PP_5508 -1.7 -1.4 conserved protein of unknown function compare
PP_1063 -1.7 -6.2 DNA-binding transcriptional regulator, homocysteine-binding compare
PP_3064 -1.6 -2.7 Phage tail protein compare
PP_0781 -1.6 -2.4 conserved protein of unknown function compare
PP_4482 -1.6 -4.9 Transcriptional regulator, AraC family compare
PP_1020 -1.6 -2.4 putative glucose-6-phosphate 1-epimerase compare
PP_3505 -1.5 -2.1 conserved protein of unknown function compare
PP_2309 -1.5 -1.3 conserved protein of unknown function compare
PP_1009 -1.5 -3.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_3411 -1.5 -1.1 conserved protein of unknown function compare
PP_2002 -1.5 -2.6 putative enzyme compare
PP_0414 -1.5 -3.8 Polyamine ABC transporter, permease protein compare
PP_4593 -1.5 -1.1 conserved protein of unknown function compare
PP_5321 -1.5 -5.3 two-component system sensory histidine kinase compare
PP_3312 -1.4 -1.3 putative Heat shock protein compare
PP_1426 -1.4 -6.7 L-aspartate oxidase compare
PP_2328 -1.4 -2.5 Phosphoadenosine phosphosulfate reductase compare
PP_1142 -1.4 -0.6 conserved protein of unknown function compare
PP_3824 -1.4 -2.6 conserved exported protein of unknown function compare
PP_0184 -1.4 -1.3 Argininosuccinate lyase compare
PP_t10 -1.4 -1.3 tRNA-Pro compare
PP_3476 -1.4 -3.6 Type II secretion system protein G compare
PP_0364 -1.3 -5.8 pimeloyl-[acp] methyl ester esterase compare
PP_3580 -1.3 -1.8 conserved protein of unknown function compare
PP_3946 -1.3 -0.5 HTH-type transcriptional repressor NicR compare
PP_0834 -1.3 -0.8 Sec translocation complex subunit YajC compare
PP_0506 -1.3 -6.8 putative ABC efflux transporter, permease protein compare
PP_3808 -1.3 -1.4 Antibiotic synthesis protein MbtH compare
PP_0381 -1.3 -4.5 Coenzyme PQQ synthesis protein F compare
PP_0879 -1.3 -3.3 dipeptide ABC transporter - putative ATP binding subunit compare
PP_2132 -1.3 -3.7 Universal stress protein compare
PP_5571 -1.3 -1.5 conserved protein of unknown function compare
PP_1662 -1.3 -2.8 conserved protein of unknown function compare
PP_3380 -1.3 -1.4 2-ketogluconate utilization repressor compare
PP_2650 -1.3 -2.6 putative 4-hydroxybutyrate dehydrogenase compare
PP_3443 -1.2 -4.9 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_0507 -1.2 -4.6 putative ABC efflux transporter, ATP-binding protein compare
PP_5176 -1.2 -2.0 conserved protein of unknown function compare
PP_1304 -1.2 -4.1 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0913 -1.2 -3.8 conserved exported protein of unknown function compare
PP_5007 -1.2 -1.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0120 -1.2 -3.5 putative zinc ABC transporter compare
PP_2307 -1.2 -2.7 conserved protein of unknown function compare
PP_0607 -1.2 -2.1 putative Type IV pili biogenesis protein FimT compare
PP_1122 -1.2 -1.5 OmpA family protein compare
PP_4199 -1.2 -0.5 putative Lipoprotein compare
PP_5048 -1.2 -2.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1099 -1.1 -1.5 Cold shock protein CapB compare
PP_5014 -1.1 -1.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_3787 -1.1 -3.4 conserved protein of unknown function compare
PP_5674 -1.1 -1.2 conserved protein of unknown function compare
PP_0643 -1.1 -1.5 protein of unknown function compare
PP_5331 -1.1 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_1237 -1.1 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5423 -1.1 -1.8 conserved membrane protein of unknown function compare
PP_1528 -1.1 -1.0 conserved protein of unknown function compare
PP_3098 -1.1 -0.9 conserved protein of unknown function compare
PP_3017 -1.1 -3.1 O6-methylguanine-DNA methyltransferase compare
PP_2820 -1.1 -1.3 HTH-type transcriptional regulator nfxB compare
PP_3473 -1.1 -3.0 curli secretion and assembly outer membrane associated component compare
PP_0874 -1.1 -1.4 conserved protein of unknown function compare
PP_3903 -1.1 -0.6 conserved protein of unknown function compare
PP_5448 -1.1 -1.9 conserved protein of unknown function compare
PP_0127 -1.1 -2.9 Thiol:disulfide interchange protein compare
PP_3102 -1.1 -1.8 conserved protein of unknown function compare
PP_0512 -1.1 -1.4 hypothetical protein compare
PP_1303 -1.1 -2.9 Sulfate adenylyltransferase subunit 2 compare
PP_0910 -1.0 -2.4 conserved exported protein of unknown function compare
PP_4961 -1.0 -0.8 putative Lipoprotein compare
PP_3065 -1.0 -3.7 Pyocin R2_PP, tail formation compare
PP_3191 -1.0 -2.0 putative threonine ammonia-lyase / dehydratase compare
PP_2137 -1.0 -1.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_3206 -1.0 -2.5 conserved protein of unknown function compare
PP_5328 -1.0 -2.7 putative phosphate transport system permease protein compare
PP_4356 -1.0 -1.3 Flagellar protein FliO compare
PP_4584 -1.0 -2.5 putative endonuclease compare
PP_0366 -1.0 -2.3 dethiobiotin synthetase compare
PP_5159 -1.0 -3.0 conserved protein of unknown function compare
PP_2306 -1.0 -0.8 conserved exported protein of unknown function compare
PP_1271 -1.0 -3.7 putative Multidrug efflux MFS transporter compare
PP_3449 -1.0 -0.8 conserved exported protein of unknown function compare
PP_4835 -1.0 -1.6 conserved exported protein of unknown function compare
PP_3225 -1.0 -2.7 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_2494 -1.0 -2.2 conserved protein of unknown function compare
PP_4832 -1.0 -2.0 Precorrin-6x reductase compare
PP_1644 -1.0 -3.3 NAD(P)H dehydrogenase (quinone) compare
PP_2397 -1.0 -2.2 EF hand domain protein compare
PP_2882 -1.0 -2.2 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1011 -1.0 -3.7 glucokinase compare
PP_1826 -1.0 -1.0 Hydrolase, isochorismatase family compare
PP_3241 -1.0 -0.4 conserved exported protein of unknown function compare
PP_5495 -0.9 -1.7 protein of unknown function compare
PP_1779 -0.9 -3.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0841 -0.9 -2.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_3341 -0.9 -1.8 nickel-responsive regulator compare
PP_5648 -0.9 -3.2 conserved exported protein of unknown function compare
PP_3359 -0.9 -1.4 putative Hydroxycinnamic acid degradation regulator compare
PP_5619 -0.9 -2.4 protein of unknown function compare
PP_0949 -0.9 -2.4 putative ATP-binding protein UPF0042 compare
PP_4994 -0.9 -2.3 conserved protein of unknown function compare
PP_5327 -0.9 -3.6 putative phosphate ABC transporter, permease subunit compare
PP_1051 -0.9 -2.1 Type II secretion pathway protein XcpV compare
PP_2580 -0.9 -1.0 conserved protein of unknown function compare
PP_4690 -0.9 -1.8 Rieske 2Fe-2S family protein compare
PP_3460 -0.9 -1.9 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1366 -0.9 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_3788 -0.9 -3.9 putative Non-ribosomal peptide synthetase compare
PP_3415 -0.9 -3.6 Transcriptional regulator, LacI family compare
PP_5533 -0.9 -0.8 conserved protein of unknown function compare
PP_1550 -0.9 -2.6 Transcriptional regulator, Cro/CI family compare
PP_3773 -0.9 -1.3 conserved protein of unknown function compare
PP_2652 -0.9 -3.5 putative Hydratase/decarboxylase compare
PP_5008 -0.9 -0.7 Poly granule-associated protein compare
PP_2665 -0.9 -2.8 Glycerol metabolism activator compare
PP_1617 -0.9 -3.5 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source 2-Deoxy-D-glucose in Pseudomonas putida KT2440

For carbon source 2-Deoxy-D-glucose across organisms